mRNA_L-elsbetiae_contig13420.2639.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13420.2639.1
Unique NamemRNA_L-elsbetiae_contig13420.2639.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13420.2639.1 vs. uniprot
Match: D7G706_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G706_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 3.550e-72
Identity = 129/226 (57.08%), Postives = 147/226 (65.04%), Query Frame = 1 
Query:  100 RSQTSLSGARARTASLPQCDRPQGARGSRRATTAAS-ARGDSVLVNAHPRQGIFLPHARYEAGDDNKFYTASPVCTLGRIFSDSSLIQPAWTKVATSPWGEAARVSGGYGERLLNGANSVETPDFMFSKRFGGHVRDYSFKKRSRPFAYNGEANTAVSYDTPTFFRGLHTQVYGRPLEKIDKPRLLKIRLGRQMIAEPEVPETGLVGGPLDWSDMRVAGSSLAARH 774
            RSQT    ARA+TA+LPQ DR +  RG+ RATTA S AR  S       R GIFLP  ++EA +++KFYTASPVCTL RIFSDSSLIQP+W KVATSPWGEAARV+GGYGERLLNGANSVE+PDFM SK                                          VYGRP+EKIDKPRLLK+ LG+Q+IAEPEVPET L GGPLDW  M V GS ++  H
Sbjct:    4 RSQTHWPQARAQTANLPQPDRTRSERGTLRATTARSRARDASSRRRGDARSGIFLPQVKFEADENSKFYTASPVCTLSRIFSDSSLIQPSWPKVATSPWGEAARVTGGYGERLLNGANSVESPDFMLSK------------------------------------------VYGRPIEKIDKPRLLKMHLGKQIIAEPEVPETDLAGGPLDWGGMAVTGSGVSVPH 187
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13420.2639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G706_ECTSI3.550e-7257.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13420contigL-elsbetiae_contig13420:1650..4434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_011550.1
Exons5
Model size935
Cds size807
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.7395067-UTR-L-elsbetiae_contig13420:1649..16521622815513.7395067-UTR-L-elsbetiae_contig13420:1649..1652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13420 1650..1652 +
1691682935.6694653-UTR-L-elsbetiae_contig13420:1649..16521691682935.6694653-UTR-L-elsbetiae_contig13420:1649..1652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13420 1650..1652 +
1622815513.822579-UTR-L-elsbetiae_contig13420:4309..44341622815513.822579-UTR-L-elsbetiae_contig13420:4309..4434Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13420 4310..4434 +
1691682935.7278707-UTR-L-elsbetiae_contig13420:4309..44341691682935.7278707-UTR-L-elsbetiae_contig13420:4309..4434Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13420 4310..4434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.7509844-CDS-L-elsbetiae_contig13420:1652..18751622815513.7509844-CDS-L-elsbetiae_contig13420:1652..1875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 1653..1875 +
1691682935.6781998-CDS-L-elsbetiae_contig13420:1652..18751691682935.6781998-CDS-L-elsbetiae_contig13420:1652..1875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 1653..1875 +
1622815513.7635827-CDS-L-elsbetiae_contig13420:2650..29071622815513.7635827-CDS-L-elsbetiae_contig13420:2650..2907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 2651..2907 +
1691682935.6863203-CDS-L-elsbetiae_contig13420:2650..29071691682935.6863203-CDS-L-elsbetiae_contig13420:2650..2907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 2651..2907 +
1622815513.7801619-CDS-L-elsbetiae_contig13420:3128..32541622815513.7801619-CDS-L-elsbetiae_contig13420:3128..3254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 3129..3254 +
1691682935.6945727-CDS-L-elsbetiae_contig13420:3128..32541691682935.6945727-CDS-L-elsbetiae_contig13420:3128..3254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 3129..3254 +
1622815513.7937381-CDS-L-elsbetiae_contig13420:3444..35101622815513.7937381-CDS-L-elsbetiae_contig13420:3444..3510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 3445..3510 +
1691682935.7085848-CDS-L-elsbetiae_contig13420:3444..35101691682935.7085848-CDS-L-elsbetiae_contig13420:3444..3510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 3445..3510 +
1622815513.8078368-CDS-L-elsbetiae_contig13420:4174..43091622815513.8078368-CDS-L-elsbetiae_contig13420:4174..4309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 4175..4309 +
1691682935.7176347-CDS-L-elsbetiae_contig13420:4174..43091691682935.7176347-CDS-L-elsbetiae_contig13420:4174..4309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13420 4175..4309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13420.2639.1prot_L-elsbetiae_contig13420.2639.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13420 1653..4309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13420.2639.1

>prot_L-elsbetiae_contig13420.2639.1 ID=prot_L-elsbetiae_contig13420.2639.1|Name=mRNA_L-elsbetiae_contig13420.2639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=269bp
MTSRRRERVGAGQTTNFVKPPRAHAMTPLSTRRSQTSLSGARARTASLPQ
CDRPQGARGSRRATTAASARGDSVLVNAHPRQGIFLPHARYEAGDDNKFY
TASPVCTLGRIFSDSSLIQPAWTKVATSPWGEAARVSGGYGERLLNGANS
VETPDFMFSKRFGGHVRDYSFKKRSRPFAYNGEANTAVSYDTPTFFRGLH
TQVYGRPLEKIDKPRLLKIRLGRQMIAEPEVPETGLVGGPLDWSDMRVAG
SSLAARHSSAWLARTTDS*
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mRNA from alignment at L-elsbetiae_contig13420:1650..4434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13420.2639.1 ID=mRNA_L-elsbetiae_contig13420.2639.1|Name=mRNA_L-elsbetiae_contig13420.2639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2785bp|location=Sequence derived from alignment at L-elsbetiae_contig13420:1650..4434+ (Laminarionema elsbetiae ELsaHSoW15)
TCTATGACTTCTCGCCGACGGGAGCGAGTGGGTGCTGGGCAAACAACCAA
CTTCGTGAAGCCGCCTCGAGCACATGCGATGACGCCGCTTTCGACACGCC
GGTCACAGACGAGCCTGTCCGGAGCGCGGGCCAGGACAGCGTCTCTCCCA
CAATGCGACCGGCCACAAGGTGCTAGAGGCTCTCGTCGGGCAACCACGGC
GGCGAGCGCGAGGGGGGACAGCGTTCGTCCAGGAGGTGGGTACACAGTAG
GTTTGTCTTCTCTCACACAACCACGTCTACTTCATGTATTGTAGGTGCAA
GGCGGCGCCGATGCGTCTCGAAGAAGAGCTAGCGAGACTAGTCTACCCTC
AAATTGACTACCGTACATCGTCTAAGACACAGACCCTCTGAGCGCGAAGA
GAAGAAATATCCTGCATAAGAAACAGCAAGTTACATAGAGAAAGAAGGGG
AAGTGGGGAGCTCTTGCTGAAAAAAAATACCCGCATGGTAAACTACGCCA
TTGTTGCATAGCCCCCCCCCCTCCCGAACGTTTTGTGTATTTCGTATATT
TGTTGGCGGATGGGGACCTTTAGATAATGCAGCGAGGAGATGGTACATAC
AACCAGTAGTCAAAGGCCCAGCAGAGAAACTAAAAAACAGCTTTTGACGC
TCCATGCGGACAAGCACCCGACAGAGGGAAGCATAAAAAATAAGAAGCAG
TTTTGGTCCCCAGAAAAAGAAATATATGGGAAAGTCGCTACATACCAGAA
ACAACAACAGTAGATACTACTGATGCTGGTGTTCGCTCCCAACACAACAA
GACTTTGAGCCTCGGACCCGAAATTGCGTTTCTTATCTCCGGGTCGCAGC
TGTAGTAGACTCAGACATTGAAGTGGTGGTGGTCGCGTTATGCGACATGT
ATGCGCGTACAGCAGTCTACACTCGACAGCTGTTGCATTCCTCGACAGTC
GCTAACTCTTCCTTCGCTCTTTTTTGCCTCTGTCGTCTACACTCCCCCCA
GTGGTCAATGCGCACCCTAGACAAGGCATCTTCCTTCCCCATGCACGATA
CGAAGCAGGCGACGACAACAAGTTCTACACAGCCTCCCCGGTTTGCACGC
TTGGTAGAATATTCTCAGACTCTAGTCTGATCCAGCCTGCTTGGACGAAA
GTGGCGACATCTCCTTGGGGGGAAGCTGCTAGAGTGTCCGGAGGGTACGG
CGAGCGACTCTTGAATGGGGCTAACTCGGTGGAGACACCCGACTTCATGT
TTAGCAAGGTGGGTGGGTCCCTTGGGTCATCAAGCGGACTTTACCCGCTA
ATTTTCTCCCTGGCTGTAATACAGTACTGCTGTGAGTTATACATATGCTG
CAGCTCTGGTTCGAGAAGAAACCGATGCCCTTGATTTCGAAAGCTGAAAC
TCACTGCTGCCCAGGTCAAAGATTAACTTCTAGAGGTTACATGGTATGTC
ATGCTGCTGGTGCTTTGCTGTGTGGACAGAGGTTTGGAGGGCACGTGAGG
GATTACAGCTTCAAGAAGCGGTCACGACCCTTTGCGTACAACGGCGAAGC
CAACACGGCTGTGTCCTACGACACCCCCACGTTCTTCCGCGGCCTTCACA
CGCAGGTTGGGTGCTAAATTATTGTCATAAGAATATGACCATTCGTTGTA
CGATCCCTTTCATCGTATTTGTACGATTTTTGATTCGATTGAGACTCTCA
TCGAGGTACTCTTCACGCGATACGTACGTATGATGCGCGTTATACCCCAC
TTTTTGCTTGACGGGGCGGCGCATCTCCCGTCATACCGCTTATAGGTGTA
CGGCCGCCCACTCGAGAAGATCGATAAACCTCGTTTGCTCAAGATTCGAC
TAGGAAGACAGGTATGATAAAACCCACGCCACAGACGGTGGATCGGGAGA
TTGTTCACTGGGGTGTGGACGCCGCGTGAACCACGTGAAATCGATTCTGA
CGTTGTATCATACTCGGTGTTCGCTACAATAGAACCTGATTTTTTGGCAC
GTGATTGTTATGGCCATATCAAAGGCGTTCAAAACTGCACTCGATTTTTT
ATATGTTACTTTGTCTCCAAACAAATACATGAAATTCTGCTCTCACTGGG
CTAACTCACGAAAAAAAAAAACGTGCAGTTTTGAATGTCTTTAGCATATC
TAGCCATATCAAACGCGTGCCAAAAAAGCAGGCTCTATTTCGTAAAAACT
GCGTGGGAAAACGCATCCAGCCATTTTGTCAGTTCCCAGGTGAATCCAGC
TTGTAGCTTTTCGAGCATTTTCGCGCATTTTTCGCACCTTGTTTGTACTC
ACTCTCAAGGGAGTCCGAAGAGTTGAACAACAGTTGGCAAGGTGATGACA
CAACATGCCGTTTTCAGCACCTAGACTAAAAGGTATGCGAAGTATGTACA
TACCAACAACGAACGGGTGATGATGTAGACATCAAGAAGAAGGGTCAGAC
ATGGATTCAAAACAGCGAACAAGACCTTAGTGCTGCGCATCATCCCGGAC
GGCTCTGACTTGAAAAACGTTACAGATGATCGCGGAGCCTGAGGTGCCAG
AGACGGGGCTTGTCGGCGGGCCTCTGGATTGGAGCGACATGCGGGTCGCG
GGCTCGAGCCTAGCAGCTCGACACAGCAGCGCTTGGCTCGCAAGAACGAC
AGATTCGTGACATTCATCCATGCTTTCGCGCCGCGGTGCAGGATTGGACT
AGACGCAGCGGTGCAGAATCGGTACCAAAATAGATTGTAAAACAGGGGGA
GGTACACTAGGTACTACTATGAAGTTAACGCCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13420:1650..4434+

>mRNA_L-elsbetiae_contig13420.2639.1 ID=mRNA_L-elsbetiae_contig13420.2639.1|Name=mRNA_L-elsbetiae_contig13420.2639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1614bp|location=Sequence derived from alignment at L-elsbetiae_contig13420:1650..4434+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTCTCGCCGACGGGAGCGAGTGGGTGCTGGGCAAACAACCAACTT
CGTGAAGCCGCCTCGAGCACATGCGATGACGCCGCTTTCGACACGCCGGT
CACAGACGAGCCTGTCCGGAGCGCGGGCCAGGACAGCGTCTCTCCCACAA
TGCGACCGGCCACAAGGTGCTAGAGGCTCTCGTCGGGCAACCACGGCGGC
GAGCGCGAGGGGGGACAGCGTTCATGACTTCTCGCCGACGGGAGCGAGTG
GGTGCTGGGCAAACAACCAACTTCGTGAAGCCGCCTCGAGCACATGCGAT
GACGCCGCTTTCGACACGCCGGTCACAGACGAGCCTGTCCGGAGCGCGGG
CCAGGACAGCGTCTCTCCCACAATGCGACCGGCCACAAGGTGCTAGAGGC
TCTCGTCGGGCAACCACGGCGGCGAGCGCGAGGGGGGACAGCGTTCTGGT
CAATGCGCACCCTAGACAAGGCATCTTCCTTCCCCATGCACGATACGAAG
CAGGCGACGACAACAAGTTCTACACAGCCTCCCCGGTTTGCACGCTTGGT
AGAATATTCTCAGACTCTAGTCTGATCCAGCCTGCTTGGACGAAAGTGGC
GACATCTCCTTGGGGGGAAGCTGCTAGAGTGTCCGGAGGGTACGGCGAGC
GACTCTTGAATGGGGCTAACTCGGTGGAGACACCCGACTTCATGTTTAGC
AAGTGGTCAATGCGCACCCTAGACAAGGCATCTTCCTTCCCCATGCACGA
TACGAAGCAGGCGACGACAACAAGTTCTACACAGCCTCCCCGGTTTGCAC
GCTTGGTAGAATATTCTCAGACTCTAGTCTGATCCAGCCTGCTTGGACGA
AAGTGGCGACATCTCCTTGGGGGGAAGCTGCTAGAGTGTCCGGAGGGTAC
GGCGAGCGACTCTTGAATGGGGCTAACTCGGTGGAGACACCCGACTTCAT
GTTTAGCAAGAGGTTTGGAGGGCACGTGAGGGATTACAGCTTCAAGAAGC
GGTCACGACCCTTTGCGTACAACGGCGAAGCCAACACGGCTGTGTCCTAC
GACACCCCCACGTTCTTCCGCGGCCTTCACACGCAGAGGTTTGGAGGGCA
CGTGAGGGATTACAGCTTCAAGAAGCGGTCACGACCCTTTGCGTACAACG
GCGAAGCCAACACGGCTGTGTCCTACGACACCCCCACGTTCTTCCGCGGC
CTTCACACGCAGGTGTACGGCCGCCCACTCGAGAAGATCGATAAACCTCG
TTTGCTCAAGATTCGACTAGGAAGACAGGTGTACGGCCGCCCACTCGAGA
AGATCGATAAACCTCGTTTGCTCAAGATTCGACTAGGAAGACAGATGATC
GCGGAGCCTGAGGTGCCAGAGACGGGGCTTGTCGGCGGGCCTCTGGATTG
GAGCGACATGCGGGTCGCGGGCTCGAGCCTAGCAGCTCGACACAGCAGCG
CTTGGCTCGCAAGAACGACAGATTCGTGAATGATCGCGGAGCCTGAGGTG
CCAGAGACGGGGCTTGTCGGCGGGCCTCTGGATTGGAGCGACATGCGGGT
CGCGGGCTCGAGCCTAGCAGCTCGACACAGCAGCGCTTGGCTCGCAAGAA
CGACAGATTCGTGA
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