mRNA_L-elsbetiae_contig13417.2635.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13417.2635.1
Unique NamemRNA_L-elsbetiae_contig13417.2635.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13417.2635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13417contigL-elsbetiae_contig13417:4421..5031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.2324774-CDS-L-elsbetiae_contig13417:4421..46551622815513.2324774-CDS-L-elsbetiae_contig13417:4421..4655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13417 4422..4655 -
1691682935.3409314-CDS-L-elsbetiae_contig13417:4421..46551691682935.3409314-CDS-L-elsbetiae_contig13417:4421..4655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13417 4422..4655 -
1622815513.2446604-CDS-L-elsbetiae_contig13417:4962..50311622815513.2446604-CDS-L-elsbetiae_contig13417:4962..5031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13417 4963..5031 -
1691682935.3576043-CDS-L-elsbetiae_contig13417:4962..50311691682935.3576043-CDS-L-elsbetiae_contig13417:4962..5031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13417 4963..5031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13417.2635.1prot_L-elsbetiae_contig13417.2635.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13417 4422..5031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13417.2635.1

>prot_L-elsbetiae_contig13417.2635.1 ID=prot_L-elsbetiae_contig13417.2635.1|Name=mRNA_L-elsbetiae_contig13417.2635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
NDGLDDSINLIDAETRELTVVGEVFVSKFTELQQCVVDSSPTPAPVDDST
NPPAPTPVALTLAPVDDSTNPPAPTPVALTLAPVDDTTTPPAPTPVAPTP
A
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mRNA from alignment at L-elsbetiae_contig13417:4421..5031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13417.2635.1 ID=mRNA_L-elsbetiae_contig13417.2635.1|Name=mRNA_L-elsbetiae_contig13417.2635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=611bp|location=Sequence derived from alignment at L-elsbetiae_contig13417:4421..5031- (Laminarionema elsbetiae ELsaHSoW15)
AACGACGGCTTGGATGACTCCATCAACTTGATCGATGCCGAGACAAGAGA
GCTCACGGTAGTCGGAGAAGTAAGTCGCCCCACGGCTATAGTCATGGTTT
ACGTCAGCGTGTATCGAAGCCGAAAACCGAAGAACACTCCAACATCGCGT
CCTGACCGAACCCCATGAAATAGCCGCTCGTGTTAACACATCTCCGGAGA
TCTCCAAGTATGCGCTATCCTTGGTTTCACTCCAAGAGTATTACAGAATA
CCCCCCCCCCCTGTATCGCGAAGGAATTCAGGAATACTGGTCTTCGGATT
CGACTGTGCCAGAATACAAACCCATCGGTGCCCACACTAATACGCCTCCT
TTCATTTTCCGTGCTATGTATGACAGGTGTTCGTGTCAAAATTCACCGAA
CTCCAGCAATGCGTGGTGGACAGTAGTCCCACTCCGGCACCAGTTGACGA
CAGCACTAATCCGCCTGCGCCAACCCCGGTCGCCCTGACCCTGGCGCCAG
TTGACGACAGCACTAATCCGCCTGCACCTACCCCGGTCGCCCTGACCCTG
GCACCAGTTGACGACACCACCACTCCACCTGCGCCAACCCCGGTCGCCCC
GACCCCGGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13417:4421..5031-

>mRNA_L-elsbetiae_contig13417.2635.1 ID=mRNA_L-elsbetiae_contig13417.2635.1|Name=mRNA_L-elsbetiae_contig13417.2635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig13417:4421..5031- (Laminarionema elsbetiae ELsaHSoW15)
AACGACGGCTTGGATGACTCCATCAACTTGATCGATGCCGAGACAAGAGA
GCTCACGGTAGTCGGAGAAAACGACGGCTTGGATGACTCCATCAACTTGA
TCGATGCCGAGACAAGAGAGCTCACGGTAGTCGGAGAAGTGTTCGTGTCA
AAATTCACCGAACTCCAGCAATGCGTGGTGGACAGTAGTCCCACTCCGGC
ACCAGTTGACGACAGCACTAATCCGCCTGCGCCAACCCCGGTCGCCCTGA
CCCTGGCGCCAGTTGACGACAGCACTAATCCGCCTGCACCTACCCCGGTC
GCCCTGACCCTGGCACCAGTTGACGACACCACCACTCCACCTGCGCCAAC
CCCGGTCGCCCCGACCCCGGCAGTGTTCGTGTCAAAATTCACCGAACTCC
AGCAATGCGTGGTGGACAGTAGTCCCACTCCGGCACCAGTTGACGACAGC
ACTAATCCGCCTGCGCCAACCCCGGTCGCCCTGACCCTGGCGCCAGTTGA
CGACAGCACTAATCCGCCTGCACCTACCCCGGTCGCCCTGACCCTGGCAC
CAGTTGACGACACCACCACTCCACCTGCGCCAACCCCGGTCGCCCCGACC
CCGGCA
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