mRNA_L-elsbetiae_contig13410.2630.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13410.2630.1
Unique NamemRNA_L-elsbetiae_contig13410.2630.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13410.2630.1 vs. uniprot
Match: A0A6H5KIA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.510e-15
Identity = 132/404 (32.67%), Postives = 167/404 (41.34%), Query Frame = 1 
Query:   82 GER-DGPSFDGGSEQNSATPSENSRQR-QGPERPPGGDKNQGQTSSAYSAPPTQRAEFPPQDDDDVEFHEALPKRRDVKRCVGSADTSFVESPPDEENPVASSGT------DDRRHPSPSPPSVYHYRSPSCSPRLSPRPMRSPYRQEGVGGRESSGRGESIRKSGRQ--SERQKEPERPACSPVGGGSDAARQGRHAGGSARVFGEGKHGGVAVGENDDAKTDGREGRGDGRGDSLPCSPLPGSGSRRV----DEPYNRGAIAQGSGGD---DIPPGAWSDNEASGNPLATRVDDSEGALLGSGGGGPCGXXXLQGAGS----------VDFGGFADGYEGSVVFIDNQSHEGXXXXXXXXXXXXXXXXXXWWQPE-GSALRGVDFAFEKGDDVPTVHATGEE 1209
            GER +G + DGG  Q++     + RQR Q     PGG ++ G+ +S    P  QRA     DDD  +  +     RD     G      +E  P    P  +SG         +R  SPSP   YHYRSPSCSPRLSPRP RSPYRQEGVG RESSGRGES R S  Q  +E      R      G                      + GGV   +   A+  G E    G     P  P    G  +     D   +   +A G GGD    + PG    N +    L    D  E  L G           L+ AG           VDF G      GSV F+DNQ+H+G                  WWQ + GSAL  ++ +FE GD+V  ++  G+E
Sbjct:  312 GERLNGGAGDGGRSQHAGAERCSPRQRHQQQPNAPGGSQSHGEPASTTYVPLDQRAGMNDHDDD-TDSSQRDAAHRDT--APGEDPAGILEQHP----PAGASGVAPSLRAKGKRFISPSP---YHYRSPSCSPRLSPRPARSPYRQEGVGARESSGRGESKRTSSHQGPAEEGASFSRGGVKDPGXXXXXXXXXXXXXXXXXXXXXARIGGVKHNDGMTAEETGEECWFSG---DRPSQPTEEEGQAKSNDSGDSRTSTCPLASGGGGDVVDGLQPGLGCQNTSLVQNLEAGGDHLERPLRGD-----TSADALRKAGDDHVGAHRGTPVDFPGLGSECGGSVDFLDNQNHQGEGGREDGEFRGEKG----WWQAQSGSALNEMEISFE-GDNVSVLNVAGKE 692
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13410.2630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIA2_9PHAE2.510e-1532.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13410contigL-elsbetiae_contig13410:68..1276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1210
Cds size1209
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.9995835-CDS-L-elsbetiae_contig13410:67..12761622815512.9995835-CDS-L-elsbetiae_contig13410:67..1276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13410 68..1276 +
1691682935.226556-CDS-L-elsbetiae_contig13410:67..12761691682935.226556-CDS-L-elsbetiae_contig13410:67..1276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13410 68..1276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13410.2630.1prot_L-elsbetiae_contig13410.2630.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13410 68..1276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13410.2630.1

>prot_L-elsbetiae_contig13410.2630.1 ID=prot_L-elsbetiae_contig13410.2630.1|Name=mRNA_L-elsbetiae_contig13410.2630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=403bp
VDTVVGGGDSDGRSAVGDEPAHGRNHQGERDGPSFDGGSEQNSATPSENS
RQRQGPERPPGGDKNQGQTSSAYSAPPTQRAEFPPQDDDDVEFHEALPKR
RDVKRCVGSADTSFVESPPDEENPVASSGTDDRRHPSPSPPSVYHYRSPS
CSPRLSPRPMRSPYRQEGVGGRESSGRGESIRKSGRQSERQKEPERPACS
PVGGGSDAARQGRHAGGSARVFGEGKHGGVAVGENDDAKTDGREGRGDGR
GDSLPCSPLPGSGSRRVDEPYNRGAIAQGSGGDDIPPGAWSDNEASGNPL
ATRVDDSEGALLGSGGGGPCGGGGLQGAGSVDFGGFADGYEGSVVFIDNQ
SHEGGGGGGGGQGGSSARAEEDWWQPEGSALRGVDFAFEKGDDVPTVHAT
GEE
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mRNA from alignment at L-elsbetiae_contig13410:68..1276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13410.2630.1 ID=mRNA_L-elsbetiae_contig13410.2630.1|Name=mRNA_L-elsbetiae_contig13410.2630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1209bp|location=Sequence derived from alignment at L-elsbetiae_contig13410:68..1276+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGACACTGTCGTCGGAGGCGGCGACAGCGATGGAAGGTCAGCAGTAGG
AGACGAACCCGCGCACGGAAGAAACCACCAGGGGGAGCGAGATGGACCCA
GCTTCGACGGCGGGTCCGAACAGAACAGCGCCACGCCAAGCGAGAATTCC
CGGCAACGGCAGGGCCCGGAACGCCCGCCTGGCGGTGATAAGAATCAAGG
CCAAACCTCCTCCGCATACTCTGCACCACCGACGCAGCGGGCAGAGTTCC
CGCCTCAAGACGACGATGATGTGGAATTCCACGAAGCGCTTCCCAAGAGG
CGCGACGTAAAACGATGCGTTGGCTCTGCCGACACGTCGTTCGTAGAAAG
CCCTCCGGATGAAGAAAACCCCGTCGCCTCTAGTGGGACCGACGACAGAC
GACACCCGTCGCCGTCGCCGCCCTCGGTATACCACTACCGCTCTCCGTCC
TGCTCTCCCCGGCTGTCTCCGCGGCCTATGAGATCCCCGTACCGCCAGGA
GGGGGTCGGCGGAAGGGAAAGCTCGGGGCGTGGCGAGAGCATCCGAAAGA
GCGGGAGGCAATCCGAACGGCAAAAAGAACCAGAACGCCCCGCTTGCAGC
CCTGTGGGAGGCGGGAGTGACGCGGCGAGGCAGGGGAGACACGCGGGGGG
ATCGGCACGCGTTTTTGGAGAGGGGAAACACGGCGGCGTGGCGGTGGGCG
AAAACGACGATGCCAAAACTGACGGACGAGAAGGAAGAGGAGACGGACGA
GGAGACTCTCTTCCTTGTTCGCCACTGCCGGGATCAGGCTCACGCCGTGT
CGACGAACCGTACAACCGAGGAGCTATCGCCCAGGGGAGCGGCGGCGACG
ATATTCCACCCGGTGCGTGGTCCGACAATGAGGCTTCAGGCAACCCGTTA
GCGACGAGGGTAGATGACTCCGAAGGCGCGCTTTTAGGGAGTGGAGGTGG
TGGCCCTTGTGGCGGTGGTGGTCTTCAGGGAGCGGGGTCCGTCGACTTTG
GCGGTTTTGCCGACGGATACGAAGGGTCAGTGGTCTTTATCGACAATCAG
AGTCACGAGGGCGGCGGCGGCGGCGGCGGTGGACAGGGCGGCAGTTCAGC
CCGTGCTGAGGAGGACTGGTGGCAACCCGAAGGAAGCGCCTTGCGAGGAG
TTGATTTTGCGTTTGAGAAAGGAGACGACGTACCTACGGTCCACGCCACC
GGCGAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13410:68..1276+

>mRNA_L-elsbetiae_contig13410.2630.1 ID=mRNA_L-elsbetiae_contig13410.2630.1|Name=mRNA_L-elsbetiae_contig13410.2630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2418bp|location=Sequence derived from alignment at L-elsbetiae_contig13410:68..1276+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGACACTGTCGTCGGAGGCGGCGACAGCGATGGAAGGTCAGCAGTAGG
AGACGAACCCGCGCACGGAAGAAACCACCAGGGGGAGCGAGATGGACCCA
GCTTCGACGGCGGGTCCGAACAGAACAGCGCCACGCCAAGCGAGAATTCC
CGGCAACGGCAGGGCCCGGAACGCCCGCCTGGCGGTGATAAGAATCAAGG
CCAAACCTCCTCCGCATACTCTGCACCACCGACGCAGCGGGCAGAGTTCC
CGCCTCAAGACGACGATGATGTGGAATTCCACGAAGCGCTTCCCAAGAGG
CGCGACGTAAAACGATGCGTTGGCTCTGCCGACACGTCGTTCGTAGAAAG
CCCTCCGGATGAAGAAAACCCCGTCGCCTCTAGTGGGACCGACGACAGAC
GACACCCGTCGCCGTCGCCGCCCTCGGTATACCACTACCGCTCTCCGTCC
TGCTCTCCCCGGCTGTCTCCGCGGCCTATGAGATCCCCGTACCGCCAGGA
GGGGGTCGGCGGAAGGGAAAGCTCGGGGCGTGGCGAGAGCATCCGAAAGA
GCGGGAGGCAATCCGAACGGCAAAAAGAACCAGAACGCCCCGCTTGCAGC
CCTGTGGGAGGCGGGAGTGACGCGGCGAGGCAGGGGAGACACGCGGGGGG
ATCGGCACGCGTTTTTGGAGAGGGGAAACACGGCGGCGTGGCGGTGGGCG
AAAACGACGATGCCAAAACTGACGGACGAGAAGGAAGAGGAGACGGACGA
GGAGACTCTCTTCCTTGTTCGCCACTGCCGGGATCAGGCTCACGCCGTGT
CGACGAACCGTACAACCGAGGAGCTATCGCCCAGGGGAGCGGCGGCGACG
ATATTCCACCCGGTGCGTGGTCCGACAATGAGGCTTCAGGCAACCCGTTA
GCGACGAGGGTAGATGACTCCGAAGGCGCGCTTTTAGGGAGTGGAGGTGG
TGGCCCTTGTGGCGGTGGTGGTCTTCAGGGAGCGGGGTCCGTCGACTTTG
GCGGTTTTGCCGACGGATACGAAGGGTCAGTGGTCTTTATCGACAATCAG
AGTCACGAGGGCGGCGGCGGCGGCGGCGGTGGACAGGGCGGCAGTTCAGC
CCGTGCTGAGGAGGACTGGTGGCAACCCGAAGGAAGCGCCTTGCGAGGAG
TTGATTTTGCGTTTGAGAAAGGAGACGACGTACCTACGGTCCACGCCACC
GGCGAGGAGGTCGACACTGTCGTCGGAGGCGGCGACAGCGATGGAAGGTC
AGCAGTAGGAGACGAACCCGCGCACGGAAGAAACCACCAGGGGGAGCGAG
ATGGACCCAGCTTCGACGGCGGGTCCGAACAGAACAGCGCCACGCCAAGC
GAGAATTCCCGGCAACGGCAGGGCCCGGAACGCCCGCCTGGCGGTGATAA
GAATCAAGGCCAAACCTCCTCCGCATACTCTGCACCACCGACGCAGCGGG
CAGAGTTCCCGCCTCAAGACGACGATGATGTGGAATTCCACGAAGCGCTT
CCCAAGAGGCGCGACGTAAAACGATGCGTTGGCTCTGCCGACACGTCGTT
CGTAGAAAGCCCTCCGGATGAAGAAAACCCCGTCGCCTCTAGTGGGACCG
ACGACAGACGACACCCGTCGCCGTCGCCGCCCTCGGTATACCACTACCGC
TCTCCGTCCTGCTCTCCCCGGCTGTCTCCGCGGCCTATGAGATCCCCGTA
CCGCCAGGAGGGGGTCGGCGGAAGGGAAAGCTCGGGGCGTGGCGAGAGCA
TCCGAAAGAGCGGGAGGCAATCCGAACGGCAAAAAGAACCAGAACGCCCC
GCTTGCAGCCCTGTGGGAGGCGGGAGTGACGCGGCGAGGCAGGGGAGACA
CGCGGGGGGATCGGCACGCGTTTTTGGAGAGGGGAAACACGGCGGCGTGG
CGGTGGGCGAAAACGACGATGCCAAAACTGACGGACGAGAAGGAAGAGGA
GACGGACGAGGAGACTCTCTTCCTTGTTCGCCACTGCCGGGATCAGGCTC
ACGCCGTGTCGACGAACCGTACAACCGAGGAGCTATCGCCCAGGGGAGCG
GCGGCGACGATATTCCACCCGGTGCGTGGTCCGACAATGAGGCTTCAGGC
AACCCGTTAGCGACGAGGGTAGATGACTCCGAAGGCGCGCTTTTAGGGAG
TGGAGGTGGTGGCCCTTGTGGCGGTGGTGGTCTTCAGGGAGCGGGGTCCG
TCGACTTTGGCGGTTTTGCCGACGGATACGAAGGGTCAGTGGTCTTTATC
GACAATCAGAGTCACGAGGGCGGCGGCGGCGGCGGCGGTGGACAGGGCGG
CAGTTCAGCCCGTGCTGAGGAGGACTGGTGGCAACCCGAAGGAAGCGCCT
TGCGAGGAGTTGATTTTGCGTTTGAGAAAGGAGACGACGTACCTACGGTC
CACGCCACCGGCGAGGAG
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