mRNA_L-elsbetiae_contig1340.2620.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1340.2620.1
Unique NamemRNA_L-elsbetiae_contig1340.2620.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1340.2620.1 vs. uniprot
Match: A0A6H5K5U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.660e-25
Identity = 61/108 (56.48%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 CAHCR--RWSPTTNVFACCQMGAHHREVVLVDAQGARESVGILCPASEQLIQKTTRVLPPMKGLELGTIVDLDPDSTVKVDDRVTFVVSCQECAGLSLGHCLDRGHVQ 318
            C+ CR  R +    VF+C +M AHHREV LVDA GAR+ VGIL   SE  +QK   VLP      LGT  DLDPDST+   D VTF+VSC ECAG SLG C+D+GH Q
Sbjct:   56 CSFCRSQRVASFNGVFSCYKMNAHHREVELVDAGGARDGVGILSARSE--LQKN-HVLPKQTE-RLGTFGDLDPDSTLNSGDGVTFIVSCDECAGFSLGLCIDKGHCQ 159
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1340.2620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5U2_9PHAE2.660e-2556.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1340contigL-elsbetiae_contig1340:761..1078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004630.1
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.0036244-CDS-L-elsbetiae_contig1340:760..10781622815512.0036244-CDS-L-elsbetiae_contig1340:760..1078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1340 761..1078 -
1691682934.6570544-CDS-L-elsbetiae_contig1340:760..10781691682934.6570544-CDS-L-elsbetiae_contig1340:760..1078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1340 761..1078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1340.2620.1prot_L-elsbetiae_contig1340.2620.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1340 761..1078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1340.2620.1

>prot_L-elsbetiae_contig1340.2620.1 ID=prot_L-elsbetiae_contig1340.2620.1|Name=mRNA_L-elsbetiae_contig1340.2620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
CAHCRRWSPTTNVFACCQMGAHHREVVLVDAQGARESVGILCPASEQLIQ
KTTRVLPPMKGLELGTIVDLDPDSTVKVDDRVTFVVSCQECAGLSLGHCL
DRGHVQ
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mRNA from alignment at L-elsbetiae_contig1340:761..1078-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1340.2620.1 ID=mRNA_L-elsbetiae_contig1340.2620.1|Name=mRNA_L-elsbetiae_contig1340.2620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig1340:761..1078- (Laminarionema elsbetiae ELsaHSoW15)
TGCGCGCATTGCCGGAGATGGTCGCCTACCACCAACGTGTTCGCGTGCTG
CCAGATGGGGGCGCATCACCGCGAAGTCGTGTTGGTTGACGCCCAGGGTG
CACGAGAGAGCGTCGGGATCCTGTGTCCGGCTTCGGAGCAGCTAATACAG
AAGACGACCCGTGTCCTTCCACCCATGAAAGGGCTGGAGCTGGGGACGAT
TGTTGATCTTGACCCGGATTCCACCGTGAAGGTTGACGATCGGGTCACGT
TCGTCGTCAGCTGCCAGGAATGTGCCGGGCTCTCGCTAGGGCACTGCCTA
GACAGGGGGCACGTCCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1340:761..1078-

>mRNA_L-elsbetiae_contig1340.2620.1 ID=mRNA_L-elsbetiae_contig1340.2620.1|Name=mRNA_L-elsbetiae_contig1340.2620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1340:761..1078- (Laminarionema elsbetiae ELsaHSoW15)
TGCGCGCATTGCCGGAGATGGTCGCCTACCACCAACGTGTTCGCGTGCTG
CCAGATGGGGGCGCATCACCGCGAAGTCGTGTTGGTTGACGCCCAGGGTG
CACGAGAGAGCGTCGGGATCCTGTGTCCGGCTTCGGAGCAGCTAATACAG
AAGACGACCCGTGTCCTTCCACCCATGAAAGGGCTGGAGCTGGGGACGAT
TGTTGATCTTGACCCGGATTCCACCGTGAAGGTTGACGATCGGGTCACGT
TCGTCGTCAGCTGCCAGGAATGTGCCGGGCTCTCGCTAGGGCACTGCCTA
GACAGGGGGCACGTCCAATGCGCGCATTGCCGGAGATGGTCGCCTACCAC
CAACGTGTTCGCGTGCTGCCAGATGGGGGCGCATCACCGCGAAGTCGTGT
TGGTTGACGCCCAGGGTGCACGAGAGAGCGTCGGGATCCTGTGTCCGGCT
TCGGAGCAGCTAATACAGAAGACGACCCGTGTCCTTCCACCCATGAAAGG
GCTGGAGCTGGGGACGATTGTTGATCTTGACCCGGATTCCACCGTGAAGG
TTGACGATCGGGTCACGTTCGTCGTCAGCTGCCAGGAATGTGCCGGGCTC
TCGCTAGGGCACTGCCTAGACAGGGGGCACGTCCAA
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