mRNA_L-elsbetiae_contig13398.2616.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13398.2616.1
Unique NamemRNA_L-elsbetiae_contig13398.2616.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13398.2616.1 vs. uniprot
Match: A0A6H5JXT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXT4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.520e-18
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 LAQDGRSFVASGTGGQRQKGYKCSGYTGGCPVNVRAYRKNGGEPWKVHTVVLAHIGGCSGGNTRGRSAAFGPTAKRALNDNPNL 252
             A DGRSFVA    G RQK Y+CSG+TGGC   VRAY+   G  WKVHT+  AH   CSGG T+GR+ A    A   + D+ ++
Sbjct:    9 FAADGRSFVAGKNSGGRQKTYRCSGHTGGCKAQVRAYKGADGV-WKVHTIDAAHTD-CSGGITKGRTVALQHLASTVVKDHSSM 90
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BLAST of mRNA_L-elsbetiae_contig13398.2616.1 vs. uniprot
Match: A0A6H5K747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K747_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.540e-17
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 LAQDGRSFVASGTGGQRQKGYKCSGYTGGCPVNVRAYRKNGGEPWKVHTVVLAHIGGCSGGNTRGRSAAFGPTAKRALNDNPNLRG 258
             A DGRSFVAS   G RQK Y+ +G+TGGC   VR Y+   G  WKVHT+  AH   CSGGNT+GR+AA    A  A+ D+  + G
Sbjct:   20 FAADGRSFVASKNSGGRQKTYRGAGHTGGCKAQVRGYKGADGV-WKVHTIDAAHTD-CSGGNTKGRTAALQHLASTAVKDHSPMNG 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13398.2616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXT4_9PHAE9.520e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K747_9PHAE1.540e-1751.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13398contigL-elsbetiae_contig13398:4762..5025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.563502-CDS-L-elsbetiae_contig13398:4761..50251622815511.563502-CDS-L-elsbetiae_contig13398:4761..5025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13398 4762..5025 +
1691682934.4567578-CDS-L-elsbetiae_contig13398:4761..50251691682934.4567578-CDS-L-elsbetiae_contig13398:4761..5025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13398 4762..5025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13398.2616.1prot_L-elsbetiae_contig13398.2616.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13398 4762..5025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13398.2616.1

>prot_L-elsbetiae_contig13398.2616.1 ID=prot_L-elsbetiae_contig13398.2616.1|Name=mRNA_L-elsbetiae_contig13398.2616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
LAQDGRSFVASGTGGQRQKGYKCSGYTGGCPVNVRAYRKNGGEPWKVHTV
VLAHIGGCSGGNTRGRSAAFGPTAKRALNDNPNLRGT*
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mRNA from alignment at L-elsbetiae_contig13398:4762..5025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13398.2616.1 ID=mRNA_L-elsbetiae_contig13398.2616.1|Name=mRNA_L-elsbetiae_contig13398.2616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig13398:4762..5025+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGCACAGGACGGGCGATCTTTTGTCGCCAGCGGCACGGGTGGCCAACG
TCAAAAGGGCTACAAGTGCAGCGGCTACACCGGCGGCTGTCCGGTTAACG
TTCGGGCTTACCGGAAGAATGGAGGTGAACCTTGGAAGGTGCACACGGTC
GTTCTAGCGCACATCGGCGGCTGCAGTGGCGGGAACACGCGGGGAAGATC
GGCTGCGTTCGGTCCCACTGCCAAACGAGCTCTCAACGACAACCCGAACC
TGCGGGGGACTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13398:4762..5025+

>mRNA_L-elsbetiae_contig13398.2616.1 ID=mRNA_L-elsbetiae_contig13398.2616.1|Name=mRNA_L-elsbetiae_contig13398.2616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig13398:4762..5025+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGCACAGGACGGGCGATCTTTTGTCGCCAGCGGCACGGGTGGCCAACG
TCAAAAGGGCTACAAGTGCAGCGGCTACACCGGCGGCTGTCCGGTTAACG
TTCGGGCTTACCGGAAGAATGGAGGTGAACCTTGGAAGGTGCACACGGTC
GTTCTAGCGCACATCGGCGGCTGCAGTGGCGGGAACACGCGGGGAAGATC
GGCTGCGTTCGGTCCCACTGCCAAACGAGCTCTCAACGACAACCCGAACC
TGCGGGGGACTTAGCTTGCACAGGACGGGCGATCTTTTGTCGCCAGCGGC
ACGGGTGGCCAACGTCAAAAGGGCTACAAGTGCAGCGGCTACACCGGCGG
CTGTCCGGTTAACGTTCGGGCTTACCGGAAGAATGGAGGTGAACCTTGGA
AGGTGCACACGGTCGTTCTAGCGCACATCGGCGGCTGCAGTGGCGGGAAC
ACGCGGGGAAGATCGGCTGCGTTCGGTCCCACTGCCAAACGAGCTCTCAA
CGACAACCCGAACCTGCGGGGGACTTAG
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