mRNA_L-elsbetiae_contig13390.2614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.280e-26 Identity = 88/223 (39.46%), Postives = 109/223 (48.88%), Query Frame = 2 Query: 869 QPSTVTDVGLETLWRGLQACLRFDED---NDXXXXXXXXXXXXXXXXXXXXSVPHQEALPAARGGNSCYPLGDPSDGNDSTPAATWRQ-------GGGEIS--------WLATVAGGGGG----------NPLQAALDISSADAGFSVYELPGSRSGG---ERSGGGGVRRKNACIVCLSRKVNVTLVPCGHHCCCMPCTE-KFELCPVCRLRITQKIKTIDG 1441 QPS + +G+ WRGLQACLR DED +D ++A GG SCYP+G +D N PA WR GGG S +LA + G +PLQAAL++S +AG+S+YEL + G ++ KNACIVC R VN T VPCGHHCCCMPC E K LCPVC + I +KIKTI Sbjct: 681 QPSAASGMGMAPFWRGLQACLRNDEDKHDDDRGRGRDRAPLEGTSHPEPKGRGGSRDAGGGDDGGKSCYPVGSSADRN---PA--WRSNAPGSAVGGGNGSGGVEGCDTFLAGMRAGAXXXXXXXXXXDRDPLQAALEMSVVEAGYSIYELTTGKDGSGXXXXXXXXXMKGKNACIVCFDRPVNCTFVPCGHHCCCMPCAESKLNLCPVCGVAIDKKIKTISA 898
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE) HSP 1 Score: 125 bits (313), Expect = 3.250e-26 Identity = 84/223 (37.67%), Postives = 107/223 (47.98%), Query Frame = 2 Query: 869 QPSTVTDVGLETLWRGLQACLRFDEDNDXXXXXXXXXXXXXXXXXXXXSVPHQEALPAAR-------GGNSCYPLGDPSDGN----DSTPAATWRQGGG-----------EISWLATVAGGGGG------NPLQAALDISSADAGFSVYELP---GSRSGGERSGGGGVRRKNACIVCLSRKVNVTLVPCGHHCCCMPCTEK-FELCPVCRLRITQKIKTIDG 1441 QPS + +G+ WRGLQACLR DED X S P + +R GG SCYP+G +D + +TP++ G G + S++ AG G +P QAAL++S A+AG+S+YEL G ACIVC R VN T +PCGHHCCCMPC E F LCPVCR+ I +KIKTI Sbjct: 751 QPSAASGMGMAPFWRGLQACLRNDEDKHDDDRGRGRDRAPLEXGYMGTSHPEPKERGGSRDAGGDDDGGKSCYPVGSSADRSPAWRSNTPSSAVGGGNGSSGVEGSDTFLDTSFVGMRAGAGXXXXTGDRDPFQAALEMSVAEAGYSIYELTSGKGXXXXXXXXXXXXXXXXXACIVCFDRPVNCTFMPCGHHCCCMPCAESMFNLCPVCRVAIDKKIKTISA 973
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: D8LDN0_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN0_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 2.100e-13 Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 2 Query: 1292 NACIVCLSRKVNVTLVPCGHHCCCMPCTEKFELCPVCRLRITQKIKTI 1435 N CIVC RKV+ TLVPCGHHCCC+ C +FE CPVCR + QKI+ I Sbjct: 113 NTCIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAI 160
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 1.890e-12 Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 2 Query: 1280 VRRKNACIVCLSRKVNVTLVPCGHHCCCMPCTEKFELCPVCRLRITQKIKTI 1435 V N CIVC +V+ TLVPCGHHCCC+ C KF LCPVCR +T KIKTI Sbjct: 738 VETDNCCIVCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTI 789
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: D7FYF6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF6_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 2.360e-12 Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 2 Query: 1301 IVCLSRKVNVTLVPCGHHCCCMPCTEKFELCPVCRLRITQKIKTI 1435 +VC +V+ TLVPCGHHCCC+ C KF LCPVCR +T KIKTI Sbjct: 39 LVCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTI 83
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.060e-11 Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 2 Query: 1292 NACIVCLSRKVNVTLVPCGHHCCCMPCTEKFELCPVCRLRITQKIKTI 1435 N CIVC RKV+ TLVPCGHHCCC+ C +FE CPVCR + QKI+ I Sbjct: 629 NMCIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAI 676
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: A0A0K9P4V2_ZOSMR (RING-type E3 ubiquitin transferase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P4V2_ZOSMR) HSP 1 Score: 65.1 bits (157), Expect = 1.340e-7 Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 2 Query: 1298 CIVCLSRKVNVTLVPCGHHCCCMPCTEKFELCPVCRLRITQKIKT 1432 C++CL ++ N VPCGH CCCM C+ + LCP+CR R+ Q ++T Sbjct: 324 CVICLEQEYNAVFVPCGHMCCCMSCSSRLSLCPICRGRLKQIVRT 368
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: A0A2G9G1Z6_9LAMI (RING-type E3 ubiquitin transferase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9G1Z6_9LAMI) HSP 1 Score: 63.5 bits (153), Expect = 3.350e-7 Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 2 Query: 1286 RKNACIVCLSRKVNVTLVPCGHHCCCMPCTEKFELCPVCRLRITQKIKT 1432 + + C++C+ R+ N L+PCGH CCCMPC+ + CP+CR +I Q ++T Sbjct: 281 KPDLCVICVEREYNSVLLPCGHMCCCMPCSLCLKTCPLCRRQIAQIVRT 329
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: A0A7I0YRF4_DANPL (E3 ubiquitin-protein ligase LRSAM1-like n=2 Tax=Danaus TaxID=13036 RepID=A0A7I0YRF4_DANPL) HSP 1 Score: 64.3 bits (155), Expect = 4.610e-7 Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 2 Query: 1298 CIVCLSRKVNVTLVPCGHHCCCMPCTE-KFELCPVCRLRITQKIKTI 1435 C+VC+ K V VPCGH CCC PC++ + E CP+CR+ I +KIK I Sbjct: 653 CVVCMDSKSEVVFVPCGHMCCCQPCSQNELETCPMCRINIERKIKVI 699
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Match: A0A212F3Y0_DANPL (Metalloendopeptidase n=1 Tax=Danaus plexippus plexippus TaxID=278856 RepID=A0A212F3Y0_DANPL) HSP 1 Score: 64.3 bits (155), Expect = 5.700e-7 Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 2 Query: 1298 CIVCLSRKVNVTLVPCGHHCCCMPCTE-KFELCPVCRLRITQKIKTI 1435 C+VC+ K V VPCGH CCC PC++ + E CP+CR+ I +KIK I Sbjct: 1179 CVVCMDSKSEVVFVPCGHMCCCQPCSQNELETCPMCRINIERKIKVI 1225 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13390.2614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13390.2614.1 >prot_L-elsbetiae_contig13390.2614.1 ID=prot_L-elsbetiae_contig13390.2614.1|Name=mRNA_L-elsbetiae_contig13390.2614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp MGFRRVWWLKLARWSCSCVWCACRVPGDAGGMFLPAKNAWYSLQPSTVTDback to top mRNA from alignment at L-elsbetiae_contig13390:44..3481+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13390.2614.1 ID=mRNA_L-elsbetiae_contig13390.2614.1|Name=mRNA_L-elsbetiae_contig13390.2614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3438bp|location=Sequence derived from alignment at L-elsbetiae_contig13390:44..3481+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13390:44..3481+ >mRNA_L-elsbetiae_contig13390.2614.1 ID=mRNA_L-elsbetiae_contig13390.2614.1|Name=mRNA_L-elsbetiae_contig13390.2614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig13390:44..3481+ (Laminarionema elsbetiae ELsaHSoW15)back to top |