mRNA_L-elsbetiae_contig1339.2613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1339.2613.1
Unique NamemRNA_L-elsbetiae_contig1339.2613.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1339.2613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1339contigL-elsbetiae_contig1339:22422..26285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009950.1
Exons3
Model size430
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1339.2613.1prot_L-elsbetiae_contig1339.2613.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1339 22424..26285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.9276237-CDS-L-elsbetiae_contig1339:22423..225141622815510.9276237-CDS-L-elsbetiae_contig1339:22423..22514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1339 22424..22514 -
1691682934.200262-CDS-L-elsbetiae_contig1339:22423..225141691682934.200262-CDS-L-elsbetiae_contig1339:22423..22514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1339 22424..22514 -
1622815511.067911-CDS-L-elsbetiae_contig1339:25190..253601622815511.067911-CDS-L-elsbetiae_contig1339:25190..25360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1339 25191..25360 -
1691682934.2100112-CDS-L-elsbetiae_contig1339:25190..253601691682934.2100112-CDS-L-elsbetiae_contig1339:25190..25360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1339 25191..25360 -
1622815511.1461892-CDS-L-elsbetiae_contig1339:26120..262851622815511.1461892-CDS-L-elsbetiae_contig1339:26120..26285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1339 26121..26285 -
1691682934.2230074-CDS-L-elsbetiae_contig1339:26120..262851691682934.2230074-CDS-L-elsbetiae_contig1339:26120..26285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1339 26121..26285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1339.2613.1

>prot_L-elsbetiae_contig1339.2613.1 ID=prot_L-elsbetiae_contig1339.2613.1|Name=mRNA_L-elsbetiae_contig1339.2613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
ASQVSLHSALHFSFVGLPSQAMGCIAFCRLWTAEDAAADADEITSERKTP
LHLSKLEAKGEDALHKSVPRDEVVIQVKEVEQQGAAGLAAEKIPHAETIP
EVPPTAQEISSATDVEEVSKDWAPSSGGSGGLTMTSQQAEAM
back to top

mRNA from alignment at L-elsbetiae_contig1339:22422..26285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1339.2613.1 ID=mRNA_L-elsbetiae_contig1339.2613.1|Name=mRNA_L-elsbetiae_contig1339.2613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3864bp|location=Sequence derived from alignment at L-elsbetiae_contig1339:22422..26285- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGTCAGGTGTCTCTGCACTCCGCCCTCCATTTTTCGTTCGTTGGTCT
CCCGTCCCAAGCCATGGGTTGCATCGCGTTCTGTAGGCTCTGGACGGCAG
AGGATGCCGCAGCTGATGCCGATGAGATCACAAGTGAACGTAAAACGCCG
CTGCATCTCTCTAAGGTGAAACACGGAAACACCCACACGACGCGTGGCTT
CCTGCTCAGTACAATGGCTTTTGGTGTAGCGGGGGACTAAATTAGGGGAG
TAGAAGGTCTGCCCAGGGCAAAACAAAGAGAGAAGGTGGCGCTTTCATGT
GTTGTCGTGTTCCGACGTTCCGACTGCGTAAGTTCAAATTTCAATTTGAA
AGTTGAACCATCTCGTCCCGAGCGGCTGAAGGAGATTTGATGAGAGAGCG
ACAGAGACTCTCGTTCGGCCTGGAGAGCTATGACATTGAGAATCAACTCA
GATTGCAGTTCTCTAGTGGTCCACTTCGGTTTAAGACCGGCTCTCACGGG
TACCAGAGACGATTTGCATCGTGTATCATTACGTCACCATGAGAGTGCCG
GGTTGATGGTCGAGTACATACAACGTGTTGCACGGCCGCCAACCTGTGTG
TACGTACTTCGCCTGCACAGAAAGGAAAGGCATGCATGGCGGTGAGAGCA
AAGAACGGGGAGGCATGCGCTCGGTGCGCGTCTGAAGTCGGCATCCTTCG
TTTTTCATCACAATATGCCTTTGAGACAGCACACGAGAAGCGCAGTGAAG
ATTGCTGACTCCTGGGATCAGAAGTGCTTCAAACTTCAAACGGGCATACC
TATCCCGCTGCTGCACACCTGCTTCTCTTACTATGCACGTGGCAGGCAGG
TGGCTCGACCATTAGATTGATAGCTGTATCAATCCCGTCTCGTTGACGCG
TTCGTTTGTCATATGTCAATTTCAGCTCGAGGCAAAGGGCGAAGATGCCC
TGCATAAAAGTGTCCCAAGAGATGAGGTTGTGATCCAGGTCAAGGAGGTG
GAGCAACAGGGCGCAGCGGGGTTGGCCGCTGAAAAAATTCCGCACGCCGA
AACGATCCCGGAGGTGCCGCCGACCGCACAAGAAATCTCCTCAGCGTGAG
TGTTCTCCCACAAGAAGATTTTATATTGATGCATTTATCTAGATAGACGT
GTAACCCTAGACTTGGGTTATGGGACTTGAAGCAGGTTTTGGTGACACAA
AAAGTGATTAAATAGAAATCAGTGAATCAAAAACAGAAAAGGAACCTAGC
CCACATGAGAGCCAACACTCCATAGGTTTCAAACGGTATCCCATTAAGTG
ACGTAATATTGGTTCAGTTAGAGTAAAAACACCTAAAATATCCGAAGAAT
TCAATATCTCCCTTGCGAAACTCAGCCAGGTCTGATTATTGAGACGCCCG
AATTTGTGCGGACCTGGGCTAGTCGGCACATCGGGACGATAACATGAACA
ACCGATATCGCCACATGGGGTATCGTAGCACAGCAGCAGCAGGGTTTTTA
TGCTTTGTTTCGTCTCCGGCAGCCTGCTACACCTGCCGCCGCTGCTGCCG
CCGCTGCTTGGCTGTTGCATTTGGGAGTTGGGGGTTATTTTTTATTTACG
AAATCGGTTTTGCTGTCTCGCTCTCATCTCTCATCCCGCACATCACATGA
CGCAGCATGCAAACCACACATATACACCCACACCACCAGCATAAGTATAT
ACATGTCTACAACAGTTCATCGCCGAACACCTCTTCGATTTCCGTCTACA
CACACCAGCAACCGGTGGTGTAGATCGATCTGCTTGCTGTTGGCGTTGGG
TATTATTACAAAGTAATCGAGCGCCAGGCGGGACTCTATCCGGCGGCCCC
CCGAGAGGTCGAGAAAAAGGAATGATTATATATTGTGTGATTACTAGTAT
AAATTTAGAGTGCTATACATTAGAGGAGTTCAGGGCCCGGGACAGCGCTA
TAAAGGAGAAAAAAGCTTCGAGCGAACAACAGCAGCGAACACCAGCAGTG
ATGTTTTGAAGGCCGAAGAAGCTTTCTAGTGTGCCAACAGACATCCCCAA
TCTGTTACCGGGCGGTGACACGGCTGCGGTGCGTGTCCTGCTGCTGGGTT
GACTTCTTTCTGCAAACAGAAGTCTTTCAGCGCAGAGAACAGAGAACCCG
CGCATCTGCCGCGGACCCGTATTTGTTTATATTAGTCCCGCCGCGTTTTC
TGAGCTGCTCGCCTTGCGGCCTGTGACGAGCCTAGTGCCAGAGGATTTAA
GGGTGCACCGCATAGTTGAAGTTGCGGGCAATAGACTGCTGGCTCTGATT
TATTCCTCTTTGATATCAGTACCATAAGAACACGTGTTTGGCACCGCAAT
TTCTATGGGTGTCGGGGTCCGTTTGACTGTCTCCAGCCCCATTTTCTTGA
AGGGTAACATCCTGGCTATCTTCGCGTGTCTGCTGTTTGGGCTGGTTCGC
AGGGCATGTGTGCCTTCGTTCGTTCAGCAAAACCCGACCAGGTTGACAGG
AAAAGGGGTGTTTTGTGACGGTTTGAAAGCACAAAGTTCTCGAGATCGAA
AGCTGCTGTGCACCGCTCCTGCCGTGCTCCGACTGTGTTCCTTCAAGGGC
CTTATAAAGGTTGCTCAGCCAAAGACCATGTCTCCAAAGACCTCGAGCGC
TCCATGGCCGGCCCTCGCTGCTGTCCACCCCAGTGTGTACACGCCCTCAC
TTTCGCGGACACACAAAAATGTAGTTTGCTCAGTTCAGACTAGGATCCAA
ACGGTCGACCGTCGTGCATATTGCTCTCTGCTCCGCTGCCAACAGTAAGA
GCTACCTCACGATAGTCAACCCCAAGGATTGACTGAGGAAGTTTGGTATC
AGTTCTCATGTCAAAGCGCAAACCCCGATTTTGCTGTGAGAGAGGGTAGC
TGGAGAGAGATCTACAGCATTTTCTCAAGTGTCGCTTCGGGCTCTCTCCT
GGAATCCCTACCCGGAATTATTAAGCTGTGCTGCGTGGTCCATCCTTAAG
GGTTCTCGGTCTTGTTTTTTTTTCACAACCCCACGTGCACACTGCCTAAG
GTACTCGCGTCACTTTTGTTTTCAACGACGAGTTGGAATCATCATCGTCA
CGCCTACCCCCAAGATGTTGATCGTCTACTCGCAGTCAAGCTTGCATTCC
AGGCTCGTTTGGTTTGGCACTCTTTTGTATGTATGTCATGTCACAGCAGT
GGCACCCTTTACATGATCGGGGAGAGGGGTTGTAAGCAATATGGATGAAG
AGCGATCCATAACCCAATTTTCCTCTTCGAACCAACCCGGCAAGTACGGC
CTGTTCATCAGAAGAAAAACAGGACATACATTACTGACTTCCTTCTAGGT
TCCTTCGCAAAACGGGGCCGCTGGGCTCGAAGAGAGAATCTCCGCCTCCG
CCCAAGCACGCCTTGAACAAGAGCGAGAAAGATAACGGTATCCTCGCACG
ATTATTGCTTCCTTGTCTCTCGTGTCCTTTGCCTCTGGGTCTTTGGACGG
GTGTATTAGGTATGTTGTGTTGTATGCTGTTTTCTTGACAGTCATATTTA
GTTGGCTGACGGGGCCCCCAGAAGAGAACTCTAAACCGCTGGAAGTCTTG
ATCAAACCCAGACAGAGATCGTGTACAGCGTACAGCTCTGCTACATAGCA
TTCCCCCCAACACTGTGTACATGTAGCTCGCACACACTACTGCAATTGCT
TACTCTCTCATACTTTTTCTATACCTTTTGCGGCACCATTGATTTACATA
CATCTGAATCGATGATACCAGGACCGATGTCGAGGAAGTGTCCAAGGACT
GGGCGCCTTCTTCGGGCGGCAGCGGCGGGCTGACGATGACGTCGCAGCAG
GCGGAGGCCATGAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1339:22422..26285-

>mRNA_L-elsbetiae_contig1339.2613.1 ID=mRNA_L-elsbetiae_contig1339.2613.1|Name=mRNA_L-elsbetiae_contig1339.2613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig1339:22422..26285- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGTCAGGTGTCTCTGCACTCCGCCCTCCATTTTTCGTTCGTTGGTCT
CCCGTCCCAAGCCATGGGTTGCATCGCGTTCTGTAGGCTCTGGACGGCAG
AGGATGCCGCAGCTGATGCCGATGAGATCACAAGTGAACGTAAAACGCCG
CTGCATCTCTCTAAGGCCAGTCAGGTGTCTCTGCACTCCGCCCTCCATTT
TTCGTTCGTTGGTCTCCCGTCCCAAGCCATGGGTTGCATCGCGTTCTGTA
GGCTCTGGACGGCAGAGGATGCCGCAGCTGATGCCGATGAGATCACAAGT
GAACGTAAAACGCCGCTGCATCTCTCTAAGCTCGAGGCAAAGGGCGAAGA
TGCCCTGCATAAAAGTGTCCCAAGAGATGAGGTTGTGATCCAGGTCAAGG
AGGTGGAGCAACAGGGCGCAGCGGGGTTGGCCGCTGAAAAAATTCCGCAC
GCCGAAACGATCCCGGAGGTGCCGCCGACCGCACAAGAAATCTCCTCAGC
CTCGAGGCAAAGGGCGAAGATGCCCTGCATAAAAGTGTCCCAAGAGATGA
GGTTGTGATCCAGGTCAAGGAGGTGGAGCAACAGGGCGCAGCGGGGTTGG
CCGCTGAAAAAATTCCGCACGCCGAAACGATCCCGGAGGTGCCGCCGACC
GCACAAGAAATCTCCTCAGCGACCGATGTCGAGGAAGTGTCCAAGGACTG
GGCGCCTTCTTCGGGCGGCAGCGGCGGGCTGACGATGACGTCGCAGCAGG
CGGAGGCCATGGACCGATGTCGAGGAAGTGTCCAAGGACTGGGCGCCTTC
TTCGGGCGGCAGCGGCGGGCTGACGATGACGTCGCAGCAGGCGGAGGCCA
TG
back to top