prot_L-elsbetiae_contig13377.2605.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13377.2605.1
Unique Nameprot_L-elsbetiae_contig13377.2605.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length269
Homology
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BLAST of mRNA_L-elsbetiae_contig13377.2605.1 vs. uniprot
Match: D7FWB7_ECTSI (RABLI1, a divergent Ectocarpus-specific RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.840e-29
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0 
Query:  203 AAWTVAGRPPSALFKVLVLGDNGVGKTALARALCGKGFQPEYTPGTGVSVLARSFSREGYPPAVLEV 269
            AAWTVAGRPPSALFK+LVLGDNGVGKTALARALCGKGF PEY+P T VSV ARSFSR+ +PPAVLE+
Sbjct:   12 AAWTVAGRPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEI 78
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13377.2605.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWB7_ECTSI1.840e-2985.07RABLI1, a divergent Ectocarpus-specific RAB-like G... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 216..237
score: 40.96
coord: 239..255
score: 24.01
NoneNo IPR availableGENE3D3.40.50.300coord: 208..266
e-value: 4.0E-9
score: 37.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 212..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13377contigL-elsbetiae_contig13377:2700..4897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13377.2605.1mRNA_L-elsbetiae_contig13377.2605.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13377 2700..4897 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13377.2605.1 ID=prot_L-elsbetiae_contig13377.2605.1|Name=mRNA_L-elsbetiae_contig13377.2605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=269bp
SANHGRGVYAQPKLPPELYVGDFDELPMGLPGSALCGLRTCCCCLNAGEF
ETIRTREEPSQIPCCSPSKQKARNPKGTCSCFLPPGDVTRANVSKPDDKK
PAGTEDDGVDQGGPRRHVSLGREGWRVCLVTTMLPVILPWRAHQQHKNIT
ELYPVESTRTEKSGPCGRFKAAIFFPWMLAKHVAFLRERRWADEVRYPWQ
TRAAWTVAGRPPSALFKVLVLGDNGVGKTALARALCGKGFQPEYTPGTGV
SVLARSFSREGYPPAVLEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase