mRNA_L-elsbetiae_contig13377.2605.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13377.2605.1
Unique NamemRNA_L-elsbetiae_contig13377.2605.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13377.2605.1 vs. uniprot
Match: D7FWB7_ECTSI (RABLI1, a divergent Ectocarpus-specific RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.840e-29
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:  607 AAWTVAGRPPSALFKVLVLGDNGVGKTALARALCGKGFQPEYTPGTGVSVLARSFSREGYPPAVLEV 807
            AAWTVAGRPPSALFK+LVLGDNGVGKTALARALCGKGF PEY+P T VSV ARSFSR+ +PPAVLE+
Sbjct:   12 AAWTVAGRPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEI 78
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13377.2605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWB7_ECTSI1.840e-2985.07RABLI1, a divergent Ectocarpus-specific RAB-like G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13377contigL-elsbetiae_contig13377:2700..4897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue2e-24
Seed eggNOG ortholog2880.D7FWB7
KEGG koko:K07897,ko:K12856
KEGG Pathwayko03040,ko04137,ko04138,ko04140,ko04144,ko04145,ko05132,ko05146,ko05152,map03040,map04137,map04138,map04140,map04144,map04145,map05132,map05146,map05152
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0394@1,KOG0394@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04031,ko04131,ko04147
Ec32 ortholog descriptionRABLI1, a divergent Ectocarpus-specific RAB-like GTPase
Ec32 orthologEc-25_003780.1
Exons4
Model size807
Cds size807
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13377.2605.1prot_L-elsbetiae_contig13377.2605.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13377 2700..4897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.570096-CDS-L-elsbetiae_contig13377:2699..29311622815510.570096-CDS-L-elsbetiae_contig13377:2699..2931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13377 2700..2931 +
1691682933.9822493-CDS-L-elsbetiae_contig13377:2699..29311691682933.9822493-CDS-L-elsbetiae_contig13377:2699..2931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13377 2700..2931 +
1622815510.5849042-CDS-L-elsbetiae_contig13377:3251..35051622815510.5849042-CDS-L-elsbetiae_contig13377:3251..3505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13377 3252..3505 +
1691682933.9989731-CDS-L-elsbetiae_contig13377:3251..35051691682933.9989731-CDS-L-elsbetiae_contig13377:3251..3505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13377 3252..3505 +
1622815510.5977545-CDS-L-elsbetiae_contig13377:4174..42921622815510.5977545-CDS-L-elsbetiae_contig13377:4174..4292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13377 4175..4292 +
1691682934.0078874-CDS-L-elsbetiae_contig13377:4174..42921691682934.0078874-CDS-L-elsbetiae_contig13377:4174..4292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13377 4175..4292 +
1622815510.612568-CDS-L-elsbetiae_contig13377:4694..48971622815510.612568-CDS-L-elsbetiae_contig13377:4694..4897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13377 4695..4897 +
1691682934.019326-CDS-L-elsbetiae_contig13377:4694..48971691682934.019326-CDS-L-elsbetiae_contig13377:4694..4897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13377 4695..4897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13377.2605.1

>prot_L-elsbetiae_contig13377.2605.1 ID=prot_L-elsbetiae_contig13377.2605.1|Name=mRNA_L-elsbetiae_contig13377.2605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=269bp
SANHGRGVYAQPKLPPELYVGDFDELPMGLPGSALCGLRTCCCCLNAGEF
ETIRTREEPSQIPCCSPSKQKARNPKGTCSCFLPPGDVTRANVSKPDDKK
PAGTEDDGVDQGGPRRHVSLGREGWRVCLVTTMLPVILPWRAHQQHKNIT
ELYPVESTRTEKSGPCGRFKAAIFFPWMLAKHVAFLRERRWADEVRYPWQ
TRAAWTVAGRPPSALFKVLVLGDNGVGKTALARALCGKGFQPEYTPGTGV
SVLARSFSREGYPPAVLEV
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mRNA from alignment at L-elsbetiae_contig13377:2700..4897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13377.2605.1 ID=mRNA_L-elsbetiae_contig13377.2605.1|Name=mRNA_L-elsbetiae_contig13377.2605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2198bp|location=Sequence derived from alignment at L-elsbetiae_contig13377:2700..4897+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCAAACCACGGGAGAGGGGTGTACGCGCAGCCGAAACTACCGCCAGA
ACTGTATGTCGGTGATTTTGACGAGCTCCCAATGGGGCTACCGGGCAGTG
CGCTGTGTGGCCTCCGGACTTGCTGTTGTTGCCTCAACGCCGGAGAGTTC
GAGACGATTCGAACCAGGGAGGAACCGTCCCAAATCCCATGCTGTTCTCC
CTCGAAACAGAAAGCAAGAAATCCCAAAGGTAGTGGCGGCGTTGGAAGAA
GCAGGACTATGCGGCATGCTGCACATCTAGACTATGCGGTGCGAATTACT
AGAAATTCGTGATTCTAAAGAAAGACTGTGCGAAGGCCAGCAATCGCTAC
CGAAAGTATGACCTGTTGCCCTCCGTATTATCCCATGTACATGGCACGTG
ATTCAAAAACGTGGCAGAAACTCAGCCGCTTATCGAATCTTACGCGTGGC
ATGGATGTACCTGGCATGCATACATCGGTCATAATGTAAGAGGATCGCCA
CCACCGACATCATAACGATCCCCACTTCTGCCGCCACCATTGCTGAAAAT
AGCGTGCTCGTGTTTTCTTCCTCCAGGTGACGTTACTCGGGCGAACGTTT
CGAAACCGGACGACAAAAAGCCAGCGGGTACAGAAGACGACGGAGTGGAT
CAGGGTGGGCCACGCAGACATGTATCTCTTGGGCGGGAAGGGTGGAGAGT
GTGCCTAGTAACGACTATGCTGCCGGTCATCCTCCCTTGGCGGGCTCACC
AGCAGCACAAGAATATCACAGAGCTCTATCCCGTCGAATCGACGCGAACG
GAAAAGGTATGTGGTCAGGTAATTTCAACGAGCTCGAGAAATCGTTGGGA
GGACGTTCGATACGGAAATGAATGTTGGGGTGTTCGCTCGATTGCACTAT
ACTCGTGAACGAAGGTGCGTCATCAAGAGCGCACAAACACAAGACAAAAT
ATTGGATAAAGTCGAACAAGAATCAGTGTCTGGGTTTCTGAAGGTTGCAT
TGGTCTTCGGGGCTAAATAATGCAGCGCCCAACAACCATTGGTCCAGCGC
GACAGACCGACAAACTCGAGACGCCATATATGTTATCCGAAGGCGTCGTG
TGGCCTACTGCTTACCTTGATAGTACTGGAAAAGGGCGGGACTGTCAAAC
AAACACTGAGTATGTCGGCTGCTTCAGGACAGCACAGGACCATTTCATTG
ATTTGTATGTAGGATAGACTCACCCTTCCTACGGTTCGCCAAGGAACCTA
CAGTACTTGTCGCTTGGTGCTCTGCGAACCTTGTGGAGCAAAACCCCGGA
ACCATCCGTTGCATATTTGTAGCTATGCAAGGGCTATCTATGTAGTACGT
ATGGTGCACTTTCGGCGGCTTGCATGAATTCCTCTTTATTTTGTTCTTCG
CTTCTCTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAACTCTTCCC
AATTTTGTCCGCGACCTTGCTTTAGAGTGGTCCGTGCGGACGTTTTAAAG
CCGCGATATTCTTCCCCTGGATGCTGGCCAAGCACGTTGCTTTCCTCCGA
GAGAGGAGATGGGCGGATGAAGTGCGCTACCCTTGGCAGACCCGTAAGTG
GTTTGTTAAAAAACCAGGCAACTTATCTCGCGAATGTGGTCGAAGGGCCA
GCATCGTAAAAAGGAAAGAGAGTATTCCGTCGGACTATCGCGCCGGCTCT
GCTAGAGTGACTGAAAGAGAAATGTTCGACCCGCGCTCAAGAGTAGACGG
CACCAGAAACAAAATCAGGATAGGAAGAAAATCACAATCGGCACTGCATA
AGTCGCAGCCCAGCTAGGCAACTCTCGCGGCTATGGGCAAGTTTGCCAAA
CGAAAAGCATCTTCAATGGGTTTCTAGCTTTCCAAATCGCATGGACCCCA
TATTCATGAAGTTTGATTTCCCCCGAGCCCCTTCGGTGTTAACCTTGTGT
TGCGGGTTCTTCCCTGCTGCTCTGGCGTTCTGGTTGTCCCTTAAGGTGCG
GCGTGGACAGTCGCTGGACGTCCGCCGTCTGCCTTGTTCAAAGTATTGGT
GCTCGGGGACAACGGCGTCGGGAAAACGGCTCTTGCGCGGGCTCTGTGCG
GCAAGGGGTTCCAGCCCGAGTACACGCCGGGTACAGGTGTTTCTGTCTTA
GCGAGGAGCTTCAGCCGCGAGGGTTACCCCCCGGCAGTCCTGGAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13377:2700..4897+

>mRNA_L-elsbetiae_contig13377.2605.1 ID=mRNA_L-elsbetiae_contig13377.2605.1|Name=mRNA_L-elsbetiae_contig13377.2605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1614bp|location=Sequence derived from alignment at L-elsbetiae_contig13377:2700..4897+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCAAACCACGGGAGAGGGGTGTACGCGCAGCCGAAACTACCGCCAGA
ACTGTATGTCGGTGATTTTGACGAGCTCCCAATGGGGCTACCGGGCAGTG
CGCTGTGTGGCCTCCGGACTTGCTGTTGTTGCCTCAACGCCGGAGAGTTC
GAGACGATTCGAACCAGGGAGGAACCGTCCCAAATCCCATGCTGTTCTCC
CTCGAAACAGAAAGCAAGAAATCCCAAAGGTATCCGCAAACCACGGGAGA
GGGGTGTACGCGCAGCCGAAACTACCGCCAGAACTGTATGTCGGTGATTT
TGACGAGCTCCCAATGGGGCTACCGGGCAGTGCGCTGTGTGGCCTCCGGA
CTTGCTGTTGTTGCCTCAACGCCGGAGAGTTCGAGACGATTCGAACCAGG
GAGGAACCGTCCCAAATCCCATGCTGTTCTCCCTCGAAACAGAAAGCAAG
AAATCCCAAAGGTACGTGCTCGTGTTTTCTTCCTCCAGGTGACGTTACTC
GGGCGAACGTTTCGAAACCGGACGACAAAAAGCCAGCGGGTACAGAAGAC
GACGGAGTGGATCAGGGTGGGCCACGCAGACATGTATCTCTTGGGCGGGA
AGGGTGGAGAGTGTGCCTAGTAACGACTATGCTGCCGGTCATCCTCCCTT
GGCGGGCTCACCAGCAGCACAAGAATATCACAGAGCTCTATCCCGTCGAA
TCGACGCGAACGGAAAAGCGTGCTCGTGTTTTCTTCCTCCAGGTGACGTT
ACTCGGGCGAACGTTTCGAAACCGGACGACAAAAAGCCAGCGGGTACAGA
AGACGACGGAGTGGATCAGGGTGGGCCACGCAGACATGTATCTCTTGGGC
GGGAAGGGTGGAGAGTGTGCCTAGTAACGACTATGCTGCCGGTCATCCTC
CCTTGGCGGGCTCACCAGCAGCACAAGAATATCACAGAGCTCTATCCCGT
CGAATCGACGCGAACGGAAAAGAGTGGTCCGTGCGGACGTTTTAAAGCCG
CGATATTCTTCCCCTGGATGCTGGCCAAGCACGTTGCTTTCCTCCGAGAG
AGGAGATGGGCGGATGAAGTGCGCTACCCTTGGCAGACCCAGTGGTCCGT
GCGGACGTTTTAAAGCCGCGATATTCTTCCCCTGGATGCTGGCCAAGCAC
GTTGCTTTCCTCCGAGAGAGGAGATGGGCGGATGAAGTGCGCTACCCTTG
GCAGACCCGTGCGGCGTGGACAGTCGCTGGACGTCCGCCGTCTGCCTTGT
TCAAAGTATTGGTGCTCGGGGACAACGGCGTCGGGAAAACGGCTCTTGCG
CGGGCTCTGTGCGGCAAGGGGTTCCAGCCCGAGTACACGCCGGGTACAGG
TGTTTCTGTCTTAGCGAGGAGCTTCAGCCGCGAGGGTTACCCCCCGGCAG
TCCTGGAGGTAGTGCGGCGTGGACAGTCGCTGGACGTCCGCCGTCTGCCT
TGTTCAAAGTATTGGTGCTCGGGGACAACGGCGTCGGGAAAACGGCTCTT
GCGCGGGCTCTGTGCGGCAAGGGGTTCCAGCCCGAGTACACGCCGGGTAC
AGGTGTTTCTGTCTTAGCGAGGAGCTTCAGCCGCGAGGGTTACCCCCCGG
CAGTCCTGGAGGTA
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