prot_L-elsbetiae_contig13372.2602.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13372.2602.1
Unique Nameprot_L-elsbetiae_contig13372.2602.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length545
Homology
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 3.630e-85
Identity = 288/595 (48.40%), Postives = 319/595 (53.61%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQLLRDDFGGGIGLDGMNLVEAMAEAMDDLRIDNHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIALDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRDPDAGGFGGKVDVSASEGESEDLKGNFVETMEAAFAVMEERLQGFPELA----GDPRYDADGG-RPSNSGGNNTASAATGAGA------GGDPGSLVSGGDRTLDKAMMRIY--------------------------------EDEKGEEXXXXEAPRDTFLGLRYRPPTPPKKVRIGDGDGAESVGDTLTPVAADAXXXXXXXXGTADDLAAADLVRTIEAARRARVAVQEDR------DLVPPEPPVGNAGPAGAAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAIDELLGLRGPVTVLLRNVLWLLAFHGAYLGLFAFFPFSIGASVIHAVSKYLDPHVLASLGKRSE-YLVLRDVVQ 545
            QVL+TC RK +VKWLP   RV+MVAGLW++FVPVCTSWLYRIWIHRTRVLLPQLFLQRLN AC+WSDCISG+IVTAAIILSFLSLMTFADFLADQLLRDDFGG IGLDGMNLVEAMAEAMDDLRIDN+N                                A DR        XXXXXXXXXXXXXXXXXXXXXXX      R  +P AGG  G+ D   + G  E  +G        A A +EER    P  A    G P + ADG  R ++       S +TG         GG     ++  +R + +   R+                                 +DE+GEE     AP DTFLGL+YRPPTPP+K   G G G  +   T                G  D               RA     E R                            XXXXXXXXXXXXXXXXXX                                 MAIDELLG+RGPVT+LLRNVLWLLAFHGAYLGLFAFFPFSIGASV HAVSKYLDPHVL+SLG RSE YL LRDVVQ
Sbjct:  135 QVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNMACIWSDCISGIIVTAAIILSFLSLMTFADFLADQLLRDDFGG-IGLDGMNLVEAMAEAMDDLRIDNNNNQVHDRVPPPPQEPQQLGPLPGH---------APDRRANHGHGGXXXXXXXXXXXXXXXXXXXXXXX------RAAEPPAGG--GRPD---NRGVGEAHQGE-------ALAAIEERRPAAPREAESGGGSPAHPADGSARDADDHDRRIGSNSTGXXXXXXXAHGGVKAEGLATEERNIPREGERVSVPELAESAAAAERQNLAQPRFRRNVDPMAYDTDDEEGEEEEA--APGDTFLGLKYRPPTPPRK---GGGQGRAAQSRTRR------------WSGHKDXXXXXXXXXXXXXXLRAGANNAEPRVRADGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGQVPRVPLAADEEEEPEDDLNDEFLDGDMDVHMAIDELLGIRGPVTMLLRNVLWLLAFHGAYLGLFAFFPFSIGASVTHAVSKYLDPHVLSSLGGRSELYLALRDVVQ 684          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 3.660e-76
Identity = 291/666 (43.69%), Postives = 319/666 (47.90%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQLLRDDFGGGIGLDGMNLVEAMAEAMDDLRIDNHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIALDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRDPDAGGFGGKVDVSASEGESEDLKGNFVETMEAAFAVMEERLQGFPELA----GDPRYDADG-----------GRPSNSGGNNTASAATGAGAGG---DPGSLVSGGDRT---------LDKAMMRIY----------------EDEKGEEXXXXEAPRDTFLGLRYRPPTPPKKVRIGDGDGAES-------------------VGDTLTPVAADAXXXXXXXXGTADDLAAADLVRTIEAARRARVA-----------------------------VQED---------RDLVPPEPPVGNAGPAGAAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------MAIDELLGLRGPVTVLLRNVLWLLAFHGAYLGLFAFFPFSIGASVIHAVSKYLDPHVLASLGKRSE-YLVLRDVVQ 545
            QVL+TC RK +VKWLP   RV+MVAGLW++FVPVCTSWLYRIWIHRTRVLLPQLFLQRLN AC+WSDCISG+IVTAAIILSFLSLMTFADFLADQLLRDDFGG IGLDGMNLVEAMAEAMDDLRIDN+N                                A DR                    XXXXXXXX         R  +P  GG  G+ +   + G  E  +G        A A + ER    P  A      P   ADG           G  S  GG     A  G  A G   +  +L   G+R             A  R +                +D +GEE      P  TFLGL+YR PTPP+KVRI D D   S                    G  +T     A        G    L   D   T     R   A                             + E+          D         NA P   A    XXXXXXXXXXXXXXXXXXXXXX           XXXXXXX                               MAIDELLG+RGPVT+LLRNVLWLLAFHGAYLGLFAFFPFSIGASV HAVSKYLDPHVLASLG RSE Y  LRDV+Q
Sbjct:  135 QVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNMACIWSDCISGIIVTAAIILSFLSLMTFADFLADQLLRDDFGG-IGLDGMNLVEAMAEAMDDLRIDNNNNNQVHDQLPPPLQEPQQLGPLPGH--------APDRRANQGHRGGRVGGVGDAVAPXXXXXXXXAGRGA----RAAEPPTGG--GRPN---NRGVGEAHQGE-------ALAAIGERRSAAPREAESGGASPAPPADGSARDADHDRRIGNESTVGGXXXXXAHRGVSAEGLATEEINLPRDGERVSVPEVAESAAAAAEQRNFAQPRFRRNVDPMAYDTDDAEGEEEEA--GPGGTFLGLKYRAPTPPRKVRIEDDDATSSKDVASASAXXXXXXXXXXXAGARIT-----ARTTREEAKGEQHSLGRVDGAATRVGFSRGPAAAXXXXXXXXXXXXXXXXXXXXXXXXXMPKIDEEGXXXXXXXXXDAAALRAGANNAEPRVRADGGGXXXXXXXXXXXXXXXXXXXXXXPENAEPAVAGAXXXXXXXPVPRVPLAADEEEDPEDDLNDEFLDGDMDVHMAIDELLGIRGPVTMLLRNVLWLLAFHGAYLGLFAFFPFSIGASVTHAVSKYLDPHVLASLGGRSELYPALRDVLQ 768          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.570e-27
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQ-LLRDDF 101
            QV ++C R+ +  WLPR  R  + A LW+V VP+ TSWLYR+WIHR+R+LLP   +QR+  AC W DC+SG I+ AAIILSFLSLMTFADF+ADQ LLR+++
Sbjct:  117 QVAASCLRRALTLWLPRALRAALAAALWLVVVPLATSWLYRVWIHRSRMLLPAQLMQRMTLACAWGDCVSGAIIAAAIILSFLSLMTFADFIADQILLREEW 218          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A7S2CYG7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CYG7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.570e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFL 92
            ++L TC R+   +W+P   R+ +   LW+  VP+ TSWLYRIWIHR+R+     F+QR+  ACLWSDC+SG+IV AAIILSFLSLM+F DFL
Sbjct:    2 RILITCLRRFATEWMPLFMRITLALMLWLFAVPLITSWLYRIWIHRSRI-----FMQRITIACLWSDCVSGIIVAAAIILSFLSLMSFTDFL 88          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.040e-20
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFL 92
            +++ TC R+ +  WLP + R+++   LW+  VP+ TSWLYRIWIHR+R      F+QRL   C+WSD ISG+IV AAI+LSFLSLM+FADFL
Sbjct:   85 RIVRTCLRRLITDWLPFILRILLATSLWLFVVPLTTSWLYRIWIHRSRA-----FIQRLTMPCIWSDSISGLIVAAAIMLSFLSLMSFADFL 171          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: I2CQM3_NANGC (E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM3_NANGC)

HSP 1 Score: 97.8 bits (242), Expect = 1.540e-19
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLN---TACLWSDCISGMIVTAAIILSFLSLMTFADFLADQL-LRDDFGGG 104
            QVL  C RK V  +LP + R+V+VA LW+  VP  TSW+YRIWIHR  +L+P L  +RL+   +  LW+D +SG+I+   II SFLSLM+FADFL     +RD  GGG
Sbjct:  115 QVLGRCLRKAVCDYLPFVVRLVIVAVLWLGVVPCTTSWIYRIWIHRASLLVPDLIRRRLHGEGSGMLWNDAVSGIIIVGFIIFSFLSLMSFADFLRFHWEVRDVNGGG 222          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A4D9D1W8_9STRA (RING-CH-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.400e-18
Identity = 60/132 (45.45%), Postives = 80/132 (60.61%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLN---TACLWSDCISGMIVTAAIILSFLSLMTFADFLADQLLRDDFGGGIGLDGMNLVEAMAEAMDDLRIDNHN 129
            QVL  C RK V  +LP + R+V+VA LW+  VP  TSW+YRIWIHR  +L+P L  +RL+   +  LW+D +SG+I+   II SFLSLM+FADFL       D  GG G +   + +    A D    DNH+
Sbjct:  101 QVLGRCLRKAVCDYLPFVVRLVIVAVLWLGVVPCTTSWIYRIWIHRASLLVPDLIRRRLHGEGSGMLWNDAVSGIIIVGFIIFSFLSLMSFADFLRFHWEVRDVNGGGGAEE-EMAQDEHNAQDGNDNDNHD 231          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: W7U493_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U493_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.020e-11
Identity = 33/54 (61.11%), Postives = 47/54 (87.04%), Query Frame = 0
Query:  471 MAIDELLGLRGPVTVLLRNVLWLLAFHGAYLGLFAFFPFSIGASVIHAVSKYLD 524
            +A+DEL+G+RGP   L+RN+LWL+AF+GAYLGLFAF P+S+GA+V+ A  KY++
Sbjct:   92 VAVDELMGVRGPFVYLVRNILWLVAFNGAYLGLFAFIPYSVGAAVVGAAEKYVE 145          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A7S3PAV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PAV4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.890e-10
Identity = 35/95 (36.84%), Postives = 64/95 (67.37%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQ 95
            +V+    R+ + +WLP + R++  A LW+   P+CT++LY+ W+H+     P   ++R+  + + +D +SG++V A +ILSFLSL++FADFL ++
Sbjct:  125 EVIYGLLRRCISRWLPFVMRLLFAATLWLGVAPLCTAYLYQAWMHK-----PSFVMERMQWSLVLTDLVSGIVVIACVILSFLSLISFADFLREE 214          
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A7S2U7Y4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7Y4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.040e-10
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFL----------ADQLLRDDFGGGIG---LDGMNLVEAMAE 118
            +VL   +R+T+ +WLP   R ++   LW+  +P+ T++LY  W+H+     P   LQR     +  D ISG+++ A IILSFLSLM+FADFL           DQ   +   GG G    DG N ++A +E
Sbjct:  108 EVLLGLSRRTLARWLPLALRTLLAIFLWLCVMPLATAYLYLGWLHK-----PSFILQRWTWELIPGDTISGVVIAAVIILSFLSLMSFADFLRFHWQQPNAEGDQAGDEVNRGGAGQDSTDGRNSLDAYSE 233          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR1_ECTSI3.630e-8548.40RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JWM1_9PHAE3.660e-7643.69RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A835YNH4_9STRA3.570e-2759.80RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A7S2CYG7_9STRA8.570e-2156.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RW40_9STRA7.040e-2055.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CQM3_NANGC1.540e-1951.85E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 ... [more]
A0A4D9D1W8_9STRA3.400e-1845.45RING-CH-type domain-containing protein n=1 Tax=Nan... [more]
W7U493_9STRA6.020e-1161.11Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3PAV4_9STRA1.890e-1036.84Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S2U7Y4_9STRA9.040e-1037.40Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13145:SF0E3 UBIQUITIN-PROTEIN LIGASE MARCH6coord: 9..524
NoneNo IPR availablePANTHERPTHR13145SSM4 PROTEINcoord: 9..524
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..88
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 45..63
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 490..516
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 89..489
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..44
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 517..545
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 490..512

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13372contigL-elsbetiae_contig13372:129..4446 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13372.2602.1mRNA_L-elsbetiae_contig13372.2602.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13372 129..4446 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13372.2602.1 ID=prot_L-elsbetiae_contig13372.2602.1|Name=mRNA_L-elsbetiae_contig13372.2602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=545bp
QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVL
LPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQLLRDD
FGGGIGLDGMNLVEAMAEAMDDLRIDNHNHHNRNHNHDDQAPPPPPPPPQ
GAPPPEPPQDIALDRRRHQGGGGGEARGDGNAPPPVPRAAAAAAAAAEGT
GGRNRDPDAGGFGGKVDVSASEGESEDLKGNFVETMEAAFAVMEERLQGF
PELAGDPRYDADGGRPSNSGGNNTASAATGAGAGGDPGSLVSGGDRTLDK
AMMRIYEDEKGEEEEEEEAPRDTFLGLRYRPPTPPKKVRIGDGDGAESVG
DTLTPVAADAAAAAAAAAGTADDLAAADLVRTIEAARRARVAVQEDRDLV
PPEPPVGNAGPAGAAGAAAGAAAGAAAGAAAGAAAGAAAGERPGPPQPVP
VDEELDDLDDGFMDGDMDVNMAIDELLGLRGPVTVLLRNVLWLLAFHGAY
LGLFAFFPFSIGASVIHAVSKYLDPHVLASLGKRSEYLVLRDVVQ
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