mRNA_L-elsbetiae_contig13372.2602.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13372.2602.1
Unique NamemRNA_L-elsbetiae_contig13372.2602.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 3.630e-85
Identity = 288/595 (48.40%), Postives = 319/595 (53.61%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQLLRDDFGGGIGLDGMNLVEAMAEAMDDLRIDNHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIALDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRDPDAGGFGGKVDVSASEGESEDLKGNFVETMEAAFAVMEERLQGFPELA----GDPRYDADGG-RPSNSGGNNTASAATGAGA------GGDPGSLVSGGDRTLDKAMMRIY--------------------------------EDEKGEEXXXXEAPRDTFLGLRYRPPTPPKKVRIGDGDGAESVGDTLTPVAADAXXXXXXXXGTADDLAAADLVRTIEAARRARVAVQEDR------DLVPPEPPVGNAGPAGAAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAIDELLGLRGPVTVLLRNVLWLLAFHGAYLGLFAFFPFSIGASVIHAVSKYLDPHVLASLGKRSE-YLVLRDVVQ 1635
            QVL+TC RK +VKWLP   RV+MVAGLW++FVPVCTSWLYRIWIHRTRVLLPQLFLQRLN AC+WSDCISG+IVTAAIILSFLSLMTFADFLADQLLRDDFGG IGLDGMNLVEAMAEAMDDLRIDN+N                                A DR        XXXXXXXXXXXXXXXXXXXXXXX      R  +P AGG  G+ D   + G  E  +G        A A +EER    P  A    G P + ADG  R ++       S +TG         GG     ++  +R + +   R+                                 +DE+GEE     AP DTFLGL+YRPPTPP+K   G G G  +   T                G  D               RA     E R                            XXXXXXXXXXXXXXXXXX                                 MAIDELLG+RGPVT+LLRNVLWLLAFHGAYLGLFAFFPFSIGASV HAVSKYLDPHVL+SLG RSE YL LRDVVQ
Sbjct:  135 QVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNMACIWSDCISGIIVTAAIILSFLSLMTFADFLADQLLRDDFGG-IGLDGMNLVEAMAEAMDDLRIDNNNNQVHDRVPPPPQEPQQLGPLPGH---------APDRRANHGHGGXXXXXXXXXXXXXXXXXXXXXXX------RAAEPPAGG--GRPD---NRGVGEAHQGE-------ALAAIEERRPAAPREAESGGGSPAHPADGSARDADDHDRRIGSNSTGXXXXXXXAHGGVKAEGLATEERNIPREGERVSVPELAESAAAAERQNLAQPRFRRNVDPMAYDTDDEEGEEEEA--APGDTFLGLKYRPPTPPRK---GGGQGRAAQSRTRR------------WSGHKDXXXXXXXXXXXXXXLRAGANNAEPRVRADGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGQVPRVPLAADEEEEPEDDLNDEFLDGDMDVHMAIDELLGIRGPVTMLLRNVLWLLAFHGAYLGLFAFFPFSIGASVTHAVSKYLDPHVLSSLGGRSELYLALRDVVQ 684
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 3.660e-76
Identity = 291/666 (43.69%), Postives = 319/666 (47.90%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQLLRDDFGGGIGLDGMNLVEAMAEAMDDLRIDNHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIALDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRDPDAGGFGGKVDVSASEGESEDLKGNFVETMEAAFAVMEERLQGFPELA----GDPRYDADG-----------GRPSNSGGNNTASAATGAGAGG---DPGSLVSGGDRT---------LDKAMMRIY----------------EDEKGEEXXXXEAPRDTFLGLRYRPPTPPKKVRIGDGDGAES-------------------VGDTLTPVAADAXXXXXXXXGTADDLAAADLVRTIEAARRARVA-----------------------------VQED---------RDLVPPEPPVGNAGPAGAAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------MAIDELLGLRGPVTVLLRNVLWLLAFHGAYLGLFAFFPFSIGASVIHAVSKYLDPHVLASLGKRSE-YLVLRDVVQ 1635
            QVL+TC RK +VKWLP   RV+MVAGLW++FVPVCTSWLYRIWIHRTRVLLPQLFLQRLN AC+WSDCISG+IVTAAIILSFLSLMTFADFLADQLLRDDFGG IGLDGMNLVEAMAEAMDDLRIDN+N                                A DR                    XXXXXXXX         R  +P  GG  G+ +   + G  E  +G        A A + ER    P  A      P   ADG           G  S  GG     A  G  A G   +  +L   G+R             A  R +                +D +GEE      P  TFLGL+YR PTPP+KVRI D D   S                    G  +T     A        G    L   D   T     R   A                             + E+          D         NA P   A    XXXXXXXXXXXXXXXXXXXXXX           XXXXXXX                               MAIDELLG+RGPVT+LLRNVLWLLAFHGAYLGLFAFFPFSIGASV HAVSKYLDPHVLASLG RSE Y  LRDV+Q
Sbjct:  135 QVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNMACIWSDCISGIIVTAAIILSFLSLMTFADFLADQLLRDDFGG-IGLDGMNLVEAMAEAMDDLRIDNNNNNQVHDQLPPPLQEPQQLGPLPGH--------APDRRANQGHRGGRVGGVGDAVAPXXXXXXXXAGRGA----RAAEPPTGG--GRPN---NRGVGEAHQGE-------ALAAIGERRSAAPREAESGGASPAPPADGSARDADHDRRIGNESTVGGXXXXXAHRGVSAEGLATEEINLPRDGERVSVPEVAESAAAAAEQRNFAQPRFRRNVDPMAYDTDDAEGEEEEA--GPGGTFLGLKYRAPTPPRKVRIEDDDATSSKDVASASAXXXXXXXXXXXAGARIT-----ARTTREEAKGEQHSLGRVDGAATRVGFSRGPAAAXXXXXXXXXXXXXXXXXXXXXXXXXMPKIDEEGXXXXXXXXXDAAALRAGANNAEPRVRADGGGXXXXXXXXXXXXXXXXXXXXXXPENAEPAVAGAXXXXXXXPVPRVPLAADEEEDPEDDLNDEFLDGDMDVHMAIDELLGIRGPVTMLLRNVLWLLAFHGAYLGLFAFFPFSIGASVTHAVSKYLDPHVLASLGGRSELYPALRDVLQ 768
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.570e-27
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQ-LLRDDF 303
            QV ++C R+ +  WLPR  R  + A LW+V VP+ TSWLYR+WIHR+R+LLP   +QR+  AC W DC+SG I+ AAIILSFLSLMTFADF+ADQ LLR+++
Sbjct:  117 QVAASCLRRALTLWLPRALRAALAAALWLVVVPLATSWLYRVWIHRSRMLLPAQLMQRMTLACAWGDCVSGAIIAAAIILSFLSLMTFADFIADQILLREEW 218
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A7S2CYG7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CYG7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.570e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFL 276
            ++L TC R+   +W+P   R+ +   LW+  VP+ TSWLYRIWIHR+R+     F+QR+  ACLWSDC+SG+IV AAIILSFLSLM+F DFL
Sbjct:    2 RILITCLRRFATEWMPLFMRITLALMLWLFAVPLITSWLYRIWIHRSRI-----FMQRITIACLWSDCVSGIIVAAAIILSFLSLMSFTDFL 88
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.040e-20
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFL 276
            +++ TC R+ +  WLP + R+++   LW+  VP+ TSWLYRIWIHR+R      F+QRL   C+WSD ISG+IV AAI+LSFLSLM+FADFL
Sbjct:   85 RIVRTCLRRLITDWLPFILRILLATSLWLFVVPLTTSWLYRIWIHRSRA-----FIQRLTMPCIWSDSISGLIVAAAIMLSFLSLMSFADFL 171
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: I2CQM3_NANGC (E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM3_NANGC)

HSP 1 Score: 97.8 bits (242), Expect = 1.540e-19
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLN---TACLWSDCISGMIVTAAIILSFLSLMTFADFLADQL-LRDDFGGG 312
            QVL  C RK V  +LP + R+V+VA LW+  VP  TSW+YRIWIHR  +L+P L  +RL+   +  LW+D +SG+I+   II SFLSLM+FADFL     +RD  GGG
Sbjct:  115 QVLGRCLRKAVCDYLPFVVRLVIVAVLWLGVVPCTTSWIYRIWIHRASLLVPDLIRRRLHGEGSGMLWNDAVSGIIIVGFIIFSFLSLMSFADFLRFHWEVRDVNGGG 222
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A4D9D1W8_9STRA (RING-CH-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.400e-18
Identity = 60/132 (45.45%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLN---TACLWSDCISGMIVTAAIILSFLSLMTFADFLADQLLRDDFGGGIGLDGMNLVEAMAEAMDDLRIDNHN 387
            QVL  C RK V  +LP + R+V+VA LW+  VP  TSW+YRIWIHR  +L+P L  +RL+   +  LW+D +SG+I+   II SFLSLM+FADFL       D  GG G +   + +    A D    DNH+
Sbjct:  101 QVLGRCLRKAVCDYLPFVVRLVIVAVLWLGVVPCTTSWIYRIWIHRASLLVPDLIRRRLHGEGSGMLWNDAVSGIIIVGFIIFSFLSLMSFADFLRFHWEVRDVNGGGGAEE-EMAQDEHNAQDGNDNDNHD 231
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: W7U493_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U493_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.020e-11
Identity = 33/54 (61.11%), Postives = 47/54 (87.04%), Query Frame = 1 
Query: 1411 MAIDELLGLRGPVTVLLRNVLWLLAFHGAYLGLFAFFPFSIGASVIHAVSKYLD 1572
            +A+DEL+G+RGP   L+RN+LWL+AF+GAYLGLFAF P+S+GA+V+ A  KY++
Sbjct:   92 VAVDELMGVRGPFVYLVRNILWLVAFNGAYLGLFAFIPYSVGAAVVGAAEKYVE 145
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A7S3PAV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PAV4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.890e-10
Identity = 35/95 (36.84%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQ 285
            +V+    R+ + +WLP + R++  A LW+   P+CT++LY+ W+H+     P   ++R+  + + +D +SG++V A +ILSFLSL++FADFL ++
Sbjct:  125 EVIYGLLRRCISRWLPFVMRLLFAATLWLGVAPLCTAYLYQAWMHK-----PSFVMERMQWSLVLTDLVSGIVVIACVILSFLSLISFADFLREE 214
[Close]
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Match: A0A7S2U7Y4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7Y4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.040e-10
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 1 
Query:    1 QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFL----------ADQLLRDDFGGGIG---LDGMNLVEAMAE 354
            +VL   +R+T+ +WLP   R ++   LW+  +P+ T++LY  W+H+     P   LQR     +  D ISG+++ A IILSFLSLM+FADFL           DQ   +   GG G    DG N ++A +E
Sbjct:  108 EVLLGLSRRTLARWLPLALRTLLAIFLWLCVMPLATAYLYLGWLHK-----PSFILQRWTWELIPGDTISGVVIAAVIILSFLSLMSFADFLRFHWQQPNAEGDQAGDEVNRGGAGQDSTDGRNSLDAYSE 233
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13372.2602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR1_ECTSI3.630e-8548.40RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JWM1_9PHAE3.660e-7643.69RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A835YNH4_9STRA3.570e-2759.80RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A7S2CYG7_9STRA8.570e-2156.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RW40_9STRA7.040e-2055.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CQM3_NANGC1.540e-1951.85E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 ... [more]
A0A4D9D1W8_9STRA3.400e-1845.45RING-CH-type domain-containing protein n=1 Tax=Nan... [more]
W7U493_9STRA6.020e-1161.11Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3PAV4_9STRA1.890e-1036.84Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S2U7Y4_9STRA9.040e-1037.40Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13372contigL-elsbetiae_contig13372:129..4446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.3
Seed ortholog evalue1.1e-79
Seed eggNOG ortholog2880.D8LBR1
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons5
Model size1635
Cds size1635
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13372.2602.1prot_L-elsbetiae_contig13372.2602.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13372 129..4446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.3216212-CDS-L-elsbetiae_contig13372:128..2221622815510.3216212-CDS-L-elsbetiae_contig13372:128..222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 129..222 -
1691682933.8075426-CDS-L-elsbetiae_contig13372:128..2221691682933.8075426-CDS-L-elsbetiae_contig13372:128..222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 129..222 -
1622815510.3331265-CDS-L-elsbetiae_contig13372:1175..16091622815510.3331265-CDS-L-elsbetiae_contig13372:1175..1609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 1176..1609 -
1691682933.8214848-CDS-L-elsbetiae_contig13372:1175..16091691682933.8214848-CDS-L-elsbetiae_contig13372:1175..1609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 1176..1609 -
1622815510.3438206-CDS-L-elsbetiae_contig13372:1837..26511622815510.3438206-CDS-L-elsbetiae_contig13372:1837..2651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 1838..2651 -
1691682933.8346062-CDS-L-elsbetiae_contig13372:1837..26511691682933.8346062-CDS-L-elsbetiae_contig13372:1837..2651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 1838..2651 -
1622815510.3542032-CDS-L-elsbetiae_contig13372:3713..38901622815510.3542032-CDS-L-elsbetiae_contig13372:3713..3890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 3714..3890 -
1691682933.8444457-CDS-L-elsbetiae_contig13372:3713..38901691682933.8444457-CDS-L-elsbetiae_contig13372:3713..3890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 3714..3890 -
1622815510.3641467-CDS-L-elsbetiae_contig13372:4330..44461622815510.3641467-CDS-L-elsbetiae_contig13372:4330..4446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 4331..4446 -
1691682933.854427-CDS-L-elsbetiae_contig13372:4330..44461691682933.854427-CDS-L-elsbetiae_contig13372:4330..4446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13372 4331..4446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13372.2602.1

>prot_L-elsbetiae_contig13372.2602.1 ID=prot_L-elsbetiae_contig13372.2602.1|Name=mRNA_L-elsbetiae_contig13372.2602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=545bp
QVLSTCARKTVVKWLPRLGRVVMVAGLWVVFVPVCTSWLYRIWIHRTRVL
LPQLFLQRLNTACLWSDCISGMIVTAAIILSFLSLMTFADFLADQLLRDD
FGGGIGLDGMNLVEAMAEAMDDLRIDNHNHHNRNHNHDDQAPPPPPPPPQ
GAPPPEPPQDIALDRRRHQGGGGGEARGDGNAPPPVPRAAAAAAAAAEGT
GGRNRDPDAGGFGGKVDVSASEGESEDLKGNFVETMEAAFAVMEERLQGF
PELAGDPRYDADGGRPSNSGGNNTASAATGAGAGGDPGSLVSGGDRTLDK
AMMRIYEDEKGEEEEEEEAPRDTFLGLRYRPPTPPKKVRIGDGDGAESVG
DTLTPVAADAAAAAAAAAGTADDLAAADLVRTIEAARRARVAVQEDRDLV
PPEPPVGNAGPAGAAGAAAGAAAGAAAGAAAGAAAGAAAGERPGPPQPVP
VDEELDDLDDGFMDGDMDVNMAIDELLGLRGPVTVLLRNVLWLLAFHGAY
LGLFAFFPFSIGASVIHAVSKYLDPHVLASLGKRSEYLVLRDVVQ
back to top

mRNA from alignment at L-elsbetiae_contig13372:129..4446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13372.2602.1 ID=mRNA_L-elsbetiae_contig13372.2602.1|Name=mRNA_L-elsbetiae_contig13372.2602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4318bp|location=Sequence derived from alignment at L-elsbetiae_contig13372:129..4446- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCTGTCCACGTGCGCAAGGAAGACAGTCGTGAAGTGGCTGCCGCG
GTTAGGCCGGGTGGTGATGGTCGCGGGGCTGTGGGTCGTCTTCGTTCCCG
TTTGCACAAGCTGGCTGTGAGTACTTTTCTATTGTAAATGTATGTATTTC
ATGCACCGTTGCGGCCGATGGTACTACTGTCGTCAGTTGCGTTGCCTGAG
AGGTGGTTTGAGCGCTGTCTACGCGGGGGCGCGAAACGAGGGAGGGGGAG
AGGGGGCTCAGAGCCTGCGAGGCCGCCCCCAGCTACGTATATGCGATGCA
AGCGTACGTATATACATAACATACCACCACAGAAGCTTCTTGCGTATCCA
AAGGACAGCAGTAGCCCCCCCCCCCCCTCCCTTTGTCGACTGTCCGTGAT
AGTCCGCCCTGCGTGATGCAATGTCGGCTTCCTCAGAGGAGAAACTCGAA
ACACTACCGTCCAAAACAGGCAAAAATGTCGCCCACTTCGGGGTAGGACT
AGTTGACCGTCGACGTTGCTGTTACTATTGGGGCGACGGCGCTGCCCGTC
GGGCAGGTACCGGATCTGGATCCACCGGACGAGGGTGCTGCTGCCCCAGC
TGTTTCTCCAGCGGCTCAACACGGCGTGCCTCTGGAGCGACTGCATCTCT
GGCATGATCGTGACCGCGGCCATCATACTCTCCTTCCTCTCGCTCATGAC
CTTCGCCGACTTTCTCGCGGACCAGCTTCTCAGGTGGAGTGGGGGTGGGG
GTGTGCTGCTGGCCTCTGAAGCCACAGCAGTACTCTGTGAAAGCCGCTGA
CCGCTGTGCCCTGAAGCCGCTTGGGCTCTGTGAAAGCCACTGACTGCTGT
GCTCTGAAGCCACAGCAGTGCTCTGTGAAGCCACTGACCGTGCCTTGAAG
CCGCTTGGGCTCCGTGAAGCCACTGCTGGCGCTCTGAAGCCACAGCAGTG
CGCTCTGTGAAGCCACTGGCTGTGCCTTGAAGCAGTTTGTGCTCTTTGAA
GCCACTGCTGTGTGCTCTGAAGCCACAGCAGTGCTCTGTGGAGCCACTGA
CTGTGCCCTGAAGCGGGCTCTGTGAAGCCACTGCTGTGCTCTGTGAAGAC
ACGTGTGCTTTGTGAAGCCACTGCTGTGCTCTGAAGCCACATGTGCTCGG
AGACCACATGCGTATGTATGTATGTACTTCTTGTGTGTGTGTGTGCGTGG
TTTGGACACATGGTCTTCGCTGGCACGACTTGCGGCCAACATAGCTGACC
ACCTTTTTGGACCCCTTTTATTGTAGGCGTCGGCATCCGTCGGGACGGAA
TGGCCACGGCCGGTTGTTTTGTATGTTGCTGTTTCTGGGGCATCAACCGC
GCCAGCTGGGTGGCCGACGAAAATACAAATGCAATCGCCCTGGTGTGTCA
CTGCCCAGACAGCACAGTTGAGACCGCCAAACTCCAGTACGTATGCCTCA
CATTGTACGTAACGTCGTCGTGGGTGTCTCGCTGTTGTTGTGGGTGCGCG
TTTGCGGTTTCGCTCGCTTCCTGTGCGTTGAATTTGTTTTAGTGTTAAAT
CCTTCATTTGGCGCAGCATTTCTCTGATGGTCGTCATTCGCCTTCTCCCT
TCTCCCTTCTCCCTTCTCCCCTCTCCCCTCTCGACTCGTGTTGCGTAACC
TGTTTCCCTATCTTGCAACCTCCCGCGCTCCCTCCTTGCCTGCCTGCCTG
CCTGCCTGCCCGCCTGTTTTTCCCTATCCGTGTGTGCGTCTTTCTATCTT
GTCTCTCTCTCTTTGTACCTGTGTTGTCGTTTTCTCAACCCGAAGGGACG
ACTTCGGTGGCGGGATCGGCCTTGACGGAATGAACCTAGTCGAAGCAATG
GCGGAGGCGATGGACGACCTTCGCATCGACAACCACAACCACCACAACCG
CAACCACAACCACGACGACCAGGCGCCGCCGCCGCCGCCGCCGCCACCGC
AGGGAGCACCCCCGCCTGAGCCGCCGCAGGACATCGCCCTTGATCGCAGG
CGCCACCAGGGCGGCGGCGGTGGCGAGGCAAGAGGAGATGGAAACGCCCC
CCCTCCTGTTCCACGCGCAGCGGCGGCGGCGGCAGCGGCGGCGGAGGGTA
CAGGGGGAAGGAATAGAGACCCAGACGCCGGCGGCTTTGGCGGCAAGGTG
GACGTGAGCGCGAGTGAAGGTGAGAGCGAGGATCTGAAAGGAAACTTCGT
GGAGACCATGGAAGCGGCTTTCGCGGTGATGGAGGAAAGGTTGCAGGGTT
TCCCGGAACTTGCTGGGGACCCTCGTTATGACGCCGACGGCGGTCGACCA
AGCAACAGCGGTGGCAACAACACAGCCAGCGCCGCAACCGGTGCTGGCGC
GGGCGGTGACCCCGGTAGTCTCGTCTCCGGTGGTGACAGGACCCTCGACA
AAGCCATGATGCGCATATACGAGGACGAAAAAGGGGAGGAGGAGGAGGAG
GAAGAAGCACCGCGTGATACTTTCCTCGGCCTCAGGTACCGGCCCCCGAC
CCCGCCCAAGAAGGTGCGCATCGGAGACGGAGACGGTGCCGAATCTGTTG
GCGACACCCTCACCCCTGTGGCTGCTGATGCCGCCGCCGCTGCCGCCGCC
GCCGCTGGTGTCGACTGGTCGACAGGGAAGGACGATTGCGAGCAGCGGCA
GCAAAGCCACGGAGCAGCGGCGTTGGCAAGGGCGGCGACTGGGGCGGGCC
CTGCCGGGGCATCACCATCACCGTCGCCGTCGCCGTCATCAACGCAAGCG
CCACCAGGCTCGGAACCAGAATACCACGCCGTGGGAGGAGCGGCGAGTGC
GGCGGTCGCGGCGGCGCAACCGCCGATGGCAGGCGAGACCGCCGACGATC
TCGCGGCCGCCGACCTGGTGCGCACCATCGAGGCTGCTCGGAGAGCACGG
GTGGCCGTGCAGGAAGACAGAGATTTGGTCCCTCCTGAGCCGCCTGTAGG
AAATGCTGGGCCCGCGGGAGCAGCGGGGGCGGCAGCGGGGGCGGCAGCGG
GGGCGGCAGCGGGGGCGGCAGCGGGGGCCGCAGCGGGGGCCGCAGCGGGC
GAACGGCCGGGGCCCCCGCAGCCGGTGCCTGTGGACGAGGAGCTCGACGA
CCTGGACGATGGGTTTATGGACGGAGATATGGACGTGAACATGGCGATCG
ACGAGTTGCTGGGGCTCCGAGGGCCCGTGACCGTGCTCCTAAGGAACGTG
CTGTGGCTGCTGGCGTTTCACGGAGCCTACCTTGGACTTTTTGCCTTCTT
TCCGTTCTCGATCGGTGCCAGGTGTGTGTGTGTGTGTGTGTGTGTTTCGT
GTATTTGGCGCCCACTACTGCCGCCGCTGCTGCTGCTGCCACTGCTCGTT
TTGTAGCAGTTCAGCTGGCCCTTTATTGTTTCGTTTGTTGTTGATGGTGA
TGATGTCGGTTGCCGTTGTTGTCTTGACATGAAAAAATCCGTCGGGATCT
GCACGGTTCACCAAGTCAAGAGTAGCGATTATATTTTCCATATGGCCGAG
CCAGCAGAGTACGACCCTCGTGGCTCTTTACGTGCTAAGCTTTCCCACGT
TTGATGCGACCCCAACACACTGGCTCTGGTAGAGAGTTTTTGCACAATTT
ACCCAGAACGAGAAGATTCACTGCAGTTATCGAGATATCCCAAACAAGAT
GGTGCCCTTCTCTACAAGTAGAAGCAATCAGCATTTGCGACAGATTGCTT
TCTCTTGTTGCGTTTTTTTCACTTGGCGTGTAGGCGTGTCGCACATGGGG
GCTCTGGCGTGTGGTTTCCGCGCGCAAGACGATATATGCCGCCGAAGGTG
TTCGCGCCGCCTCATCAAATTATTTCGCGCAGTGTTGTTCTCCAGCCCTT
AATTGTAAAACATGCGGTTCGTCGCAGCCATCAGCGAAAACTGGTGGTGC
TGCCCCGCCGCGGGTAGAGTATCGTTCGCATCATGCACTGCACGGAAAAG
CCGCCACGAGAGTGCCCCACCAGCTGCTGTAAATTGTAATTGTAACCACG
ACTTGCGTTTATTGTAGTACGTACATACGATAGGAACAGTAGTGTTCCGT
GCCCAACGGTTCGAGTTTGCGCGGGTGTATCTTTGTTTGGCCGGTTGGTC
AAATACCCGCTTCGTTTCGTTATCCGTTTCGTAATTTTGTTCCGTTTCGT
GTTTTTTGTTTGTTTGTTTGCTTGCTTGCTTGTGGTGCTTTCTGTCCTTA
TTTTGTTTTCCCGGTTCGATCCAGCGTTATTCACGCCGTCTCCAAGTACC
TGGACCCCCACGTGCTAGCCAGCCTGGGCAAGCGGTCTGAGTACTTGGTC
TTGCGAGATGTGGTACAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13372:129..4446-

>mRNA_L-elsbetiae_contig13372.2602.1 ID=mRNA_L-elsbetiae_contig13372.2602.1|Name=mRNA_L-elsbetiae_contig13372.2602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3270bp|location=Sequence derived from alignment at L-elsbetiae_contig13372:129..4446- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCTGTCCACGTGCGCAAGGAAGACAGTCGTGAAGTGGCTGCCGCG
GTTAGGCCGGGTGGTGATGGTCGCGGGGCTGTGGGTCGTCTTCGTTCCCG
TTTGCACAAGCTGGCTCAGGTGCTGTCCACGTGCGCAAGGAAGACAGTCG
TGAAGTGGCTGCCGCGGTTAGGCCGGGTGGTGATGGTCGCGGGGCTGTGG
GTCGTCTTCGTTCCCGTTTGCACAAGCTGGCTGTACCGGATCTGGATCCA
CCGGACGAGGGTGCTGCTGCCCCAGCTGTTTCTCCAGCGGCTCAACACGG
CGTGCCTCTGGAGCGACTGCATCTCTGGCATGATCGTGACCGCGGCCATC
ATACTCTCCTTCCTCTCGCTCATGACCTTCGCCGACTTTCTCGCGGACCA
GCTTCTCAGGTACCGGATCTGGATCCACCGGACGAGGGTGCTGCTGCCCC
AGCTGTTTCTCCAGCGGCTCAACACGGCGTGCCTCTGGAGCGACTGCATC
TCTGGCATGATCGTGACCGCGGCCATCATACTCTCCTTCCTCTCGCTCAT
GACCTTCGCCGACTTTCTCGCGGACCAGCTTCTCAGGGACGACTTCGGTG
GCGGGATCGGCCTTGACGGAATGAACCTAGTCGAAGCAATGGCGGAGGCG
ATGGACGACCTTCGCATCGACAACCACAACCACCACAACCGCAACCACAA
CCACGACGACCAGGCGCCGCCGCCGCCGCCGCCGCCACCGCAGGGAGCAC
CCCCGCCTGAGCCGCCGCAGGACATCGCCCTTGATCGCAGGCGCCACCAG
GGCGGCGGCGGTGGCGAGGCAAGAGGAGATGGAAACGCCCCCCCTCCTGT
TCCACGCGCAGCGGCGGCGGCGGCAGCGGCGGCGGAGGGTACAGGGGGAA
GGAATAGAGACCCAGACGCCGGCGGCTTTGGCGGCAAGGTGGACGTGAGC
GCGAGTGAAGGTGAGAGCGAGGATCTGAAAGGAAACTTCGTGGAGACCAT
GGAAGCGGCTTTCGCGGTGATGGAGGAAAGGTTGCAGGGTTTCCCGGAAC
TTGCTGGGGACCCTCGTTATGACGCCGACGGCGGTCGACCAAGCAACAGC
GGTGGCAACAACACAGCCAGCGCCGCAACCGGTGCTGGCGCGGGCGGTGA
CCCCGGTAGTCTCGTCTCCGGTGGTGACAGGACCCTCGACAAAGCCATGA
TGCGCATATACGAGGACGAAAAAGGGGAGGAGGAGGAGGAGGAAGAAGCA
CCGCGTGATACTTTCCTCGGCCTCAGGTACCGGCCCCCGACCCCGCCCAA
GAAGGTGCGCATCGGAGACGGAGACGGTGCCGAATCTGTTGGCGACACCC
TCACCCCTGTGGCTGCTGATGCCGCCGCCGCTGCCGCCGCCGCCGCTGGT
GGACGACTTCGGTGGCGGGATCGGCCTTGACGGAATGAACCTAGTCGAAG
CAATGGCGGAGGCGATGGACGACCTTCGCATCGACAACCACAACCACCAC
AACCGCAACCACAACCACGACGACCAGGCGCCGCCGCCGCCGCCGCCGCC
ACCGCAGGGAGCACCCCCGCCTGAGCCGCCGCAGGACATCGCCCTTGATC
GCAGGCGCCACCAGGGCGGCGGCGGTGGCGAGGCAAGAGGAGATGGAAAC
GCCCCCCCTCCTGTTCCACGCGCAGCGGCGGCGGCGGCAGCGGCGGCGGA
GGGTACAGGGGGAAGGAATAGAGACCCAGACGCCGGCGGCTTTGGCGGCA
AGGTGGACGTGAGCGCGAGTGAAGGTGAGAGCGAGGATCTGAAAGGAAAC
TTCGTGGAGACCATGGAAGCGGCTTTCGCGGTGATGGAGGAAAGGTTGCA
GGGTTTCCCGGAACTTGCTGGGGACCCTCGTTATGACGCCGACGGCGGTC
GACCAAGCAACAGCGGTGGCAACAACACAGCCAGCGCCGCAACCGGTGCT
GGCGCGGGCGGTGACCCCGGTAGTCTCGTCTCCGGTGGTGACAGGACCCT
CGACAAAGCCATGATGCGCATATACGAGGACGAAAAAGGGGAGGAGGAGG
AGGAGGAAGAAGCACCGCGTGATACTTTCCTCGGCCTCAGGTACCGGCCC
CCGACCCCGCCCAAGAAGGTGCGCATCGGAGACGGAGACGGTGCCGAATC
TGTTGGCGACACCCTCACCCCTGTGGCTGCTGATGCCGCCGCCGCTGCCG
CCGCCGCCGCTGGTACCGCCGACGATCTCGCGGCCGCCGACCTGGTGCGC
ACCATCGAGGCTGCTCGGAGAGCACGGGTGGCCGTGCAGGAAGACAGAGA
TTTGGTCCCTCCTGAGCCGCCTGTAGGAAATGCTGGGCCCGCGGGAGCAG
CGGGGGCGGCAGCGGGGGCGGCAGCGGGGGCGGCAGCGGGGGCGGCAGCG
GGGGCCGCAGCGGGGGCCGCAGCGGGCGAACGGCCGGGGCCCCCGCAGCC
GGTGCCTGTGGACGAGGAGCTCGACGACCTGGACGATGGGTTTATGGACG
GAGATATGGACGTGAACATGGCGATCGACGAGTTGCTGGGGCTCCGAGGG
CCCGTGACCGTGCTCCTAAGGAACGTGCTGTGGCTGCTGGCGTTTCACGG
AGCCTACCTTGGACTTTTTGCCTTCTTTCCGTTCTCGATCGGTGCCAGAC
CGCCGACGATCTCGCGGCCGCCGACCTGGTGCGCACCATCGAGGCTGCTC
GGAGAGCACGGGTGGCCGTGCAGGAAGACAGAGATTTGGTCCCTCCTGAG
CCGCCTGTAGGAAATGCTGGGCCCGCGGGAGCAGCGGGGGCGGCAGCGGG
GGCGGCAGCGGGGGCGGCAGCGGGGGCGGCAGCGGGGGCCGCAGCGGGGG
CCGCAGCGGGCGAACGGCCGGGGCCCCCGCAGCCGGTGCCTGTGGACGAG
GAGCTCGACGACCTGGACGATGGGTTTATGGACGGAGATATGGACGTGAA
CATGGCGATCGACGAGTTGCTGGGGCTCCGAGGGCCCGTGACCGTGCTCC
TAAGGAACGTGCTGTGGCTGCTGGCGTTTCACGGAGCCTACCTTGGACTT
TTTGCCTTCTTTCCGTTCTCGATCGGTGCCAGCGTTATTCACGCCGTCTC
CAAGTACCTGGACCCCCACGTGCTAGCCAGCCTGGGCAAGCGGTCTGAGT
ACTTGGTCTTGCGAGATGTGGTACAGCGTTATTCACGCCGTCTCCAAGTA
CCTGGACCCCCACGTGCTAGCCAGCCTGGGCAAGCGGTCTGAGTACTTGG
TCTTGCGAGATGTGGTACAG
back to top