mRNA_L-elsbetiae_contig13370.2601.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13370.2601.1
Unique NamemRNA_L-elsbetiae_contig13370.2601.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: D7G8N1_ECTSI (Eukaryotic translation initiation factor 3 subunit E n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N1_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.490e-28
Identity = 55/60 (91.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 GMDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTLVN 180
            GM++EAAEKWIVDLIRGSKLDAKIDSRDN+VIMGGTFPSVYQQIMGKTKDL+VRS+TLVN
Sbjct:  397 GMEMEAAEKWIVDLIRGSKLDAKIDSRDNNVIMGGTFPSVYQQIMGKTKDLTVRSYTLVN 456
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: A0A836CBR3_9STRA (Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.190e-20
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    4 MDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTLVN 180
            MD +AAEKWI DLIR S+LDAKIDSRDNSV+MG +FPSVYQQ++ KT DLS+RS+ L+N
Sbjct:  381 MDADAAEKWIADLIRTSQLDAKIDSRDNSVVMGASFPSVYQQVIEKTDDLSLRSYVLIN 439
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: A0A7S2SQG8_9STRA (Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQG8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.230e-18
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    4 MDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTL 174
            M+ E AE+WIV+LIRG++LDAKIDS+DN VIMG +FPSVYQQI+ KTKDL+VRSF L
Sbjct:  377 MEPEDAEQWIVNLIRGAQLDAKIDSKDNCVIMGSSFPSVYQQIVDKTKDLTVRSFQL 433
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: A0A7S2GAP6_9STRA (Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GAP6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.170e-17
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 MDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTL 174
            M  E AE+WIVDLIRG+ LDAKIDS++N VIMG  FPSVYQQ++ KTKDL++RS+ L
Sbjct:  407 MGPEEAERWIVDLIRGAYLDAKIDSKENYVIMGSNFPSVYQQVIDKTKDLTIRSYQL 463
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: A0A7S2V1I9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1I9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.540e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   13 EAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTLVN 180
            EAAEKWIVDLIRG+ LDAK+ S DN+V+MGGT PS++QQ++ +TKDL  RS+ L N
Sbjct:  167 EAAEKWIVDLIRGALLDAKLSSEDNTVVMGGTTPSIHQQVIERTKDLVTRSYLLSN 222
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: A0A2P6NCE6_9EUKA (Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCE6_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 1.470e-16
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 GMDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTLVN 180
            GMD EAAEKWIV+LIR +KLDAKIDS+ N+V+MG   PSVYQ+++ +TK LS RS+ L N
Sbjct:  377 GMDEEAAEKWIVNLIRNAKLDAKIDSQANTVLMGSQHPSVYQKVIERTKALSYRSYVLAN 436
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: A0A7S2EKV0_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S2EKV0_TRICV)

HSP 1 Score: 73.2 bits (178), Expect = 7.060e-15
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 MDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTL 174
            MD + AE+WIVDLIR + LDAKIDS +  V+MGG   SVY+Q+M +T+DL+VRS TL
Sbjct:   72 MDQDQAERWIVDLIRNALLDAKIDSEERCVVMGGESQSVYEQVMERTRDLNVRSGTL 128
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: A0A7S3NHS4_9STRA (Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHS4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.670e-14
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    4 MDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTLVN 180
            MD  AAE+WI DLIRG+ LDAKIDS+++ VIM   FPSVY Q++ KT+DL +RS  L+N
Sbjct:  387 MDALAAERWIADLIRGALLDAKIDSQNSCVIMNNQFPSVYSQVIDKTRDLFLRSNALIN 445
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: I0Z787_COCSC (Eukaryotic translation initiation factor 3 subunit E n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z787_COCSC)

HSP 1 Score: 75.1 bits (183), Expect = 2.160e-14
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    4 MDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTLVN 180
            MD EAAEKWIV+LIR ++L+AKIDS+  +V+MG  FPS Y+Q+M K K LS R+F L N
Sbjct:  356 MDAEAAEKWIVNLIRHARLNAKIDSQAGTVVMGMQFPSAYEQVMEKAKGLSQRTFVLAN 414
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BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Match: A0A7R9WBA9_9STRA (Eukaryotic translation initiation factor 3 subunit E n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9WBA9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.190e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    4 MDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDLSVRSFTLV 177
            MD + AE+WIVDLIR + LDAKIDS +  V+MGG   SVY+Q+M +T+DL+VRS TLV
Sbjct:  444 MDQDQAERWIVDLIRNALLDAKIDSEERCVVMGGESQSVYEQVMERTRDLNVRSGTLV 501
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13370.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8N1_ECTSI2.490e-2891.67Eukaryotic translation initiation factor 3 subunit... [more]
A0A836CBR3_9STRA1.190e-2072.88Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2SQG8_9STRA1.230e-1873.68Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2GAP6_9STRA3.170e-1768.42Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2V1I9_9STRA4.540e-1766.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2P6NCE6_9EUKA1.470e-1665.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2EKV0_TRICV7.060e-1561.40Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A7S3NHS4_9STRA1.670e-1461.02Eukaryotic translation initiation factor 3 subunit... [more]
I0Z787_COCSC2.160e-1461.02Eukaryotic translation initiation factor 3 subunit... [more]
A0A7R9WBA9_9STRA3.190e-1462.07Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13370contigL-elsbetiae_contig13370:338..798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue5.3e-23
Seed eggNOG ortholog2880.D7G8N1
Preferred nameINT6
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K03250,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03013,ko05160,map00780,map01100,map03013,map05160
KEGG ModuleM00123
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000184,GO:0000502,GO:0000956,GO:0001732,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005852,GO:0005886,GO:0006139,GO:0006351,GO:0006352,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009651,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009908,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016282,GO:0016604,GO:0016605,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030162,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0034248,GO:0034249,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042176,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0045182,GO:0045727,GO:0045732,GO:0045862,GO:0045947,GO:0046483,GO:0046700,GO:0047485,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051248,GO:0051641,GO:0060255,GO:0060341,GO:0061136,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070196,GO:0070727,GO:0070993,GO:0071540,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090567,GO:0097159,GO:0097659,GO:1900180,GO:1900182,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901800,GO:1902415,GO:1902416,GO:1902494,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903827,GO:1903829,GO:1905214,GO:1905216,GO:1905368,GO:1905369,GO:1990904,GO:2000058,GO:2000060,GO:2000112,GO:2000113
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG2758@1,KOG2758@2759
EC2.6.1.62,6.3.3.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03051,ko04147
Exons2
Model size180
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13370.2601.1prot_L-elsbetiae_contig13370.2601.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13370 341..798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.257281-UTR-L-elsbetiae_contig13370:337..3401622815510.257281-UTR-L-elsbetiae_contig13370:337..340Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13370 338..340 +
1691682933.7722526-UTR-L-elsbetiae_contig13370:337..3401691682933.7722526-UTR-L-elsbetiae_contig13370:337..340Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13370 338..340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.2703118-CDS-L-elsbetiae_contig13370:340..4661622815510.2703118-CDS-L-elsbetiae_contig13370:340..466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13370 341..466 +
1691682933.7879286-CDS-L-elsbetiae_contig13370:340..4661691682933.7879286-CDS-L-elsbetiae_contig13370:340..466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13370 341..466 +
1622815510.2817078-CDS-L-elsbetiae_contig13370:747..7981622815510.2817078-CDS-L-elsbetiae_contig13370:747..798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13370 748..798 +
1691682933.7985516-CDS-L-elsbetiae_contig13370:747..7981691682933.7985516-CDS-L-elsbetiae_contig13370:747..798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13370 748..798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13370.2601.1

>prot_L-elsbetiae_contig13370.2601.1 ID=prot_L-elsbetiae_contig13370.2601.1|Name=mRNA_L-elsbetiae_contig13370.2601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MDIEAAEKWIVDLIRGSKLDAKIDSRDNSVIMGGTFPSVYQQIMGKTKDL
SVRSFTLVN
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mRNA from alignment at L-elsbetiae_contig13370:338..798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13370.2601.1 ID=mRNA_L-elsbetiae_contig13370.2601.1|Name=mRNA_L-elsbetiae_contig13370.2601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=461bp|location=Sequence derived from alignment at L-elsbetiae_contig13370:338..798+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATGGACATCGAAGCCGCTGAGAAGTGGATAGTGGACCTGATCAGGGG
CTCGAAGCTGGACGCCAAGATCGACTCGCGCGACAACAGCGTCATCATGG
GCGGCACGTTCCCCTCCGTGTATCAGCAGGTGTCAAATCTAGAACGACGT
TTGTTGTGTTGGTTTGTCCACGTACGGCATCTCCGGGCCCGGCGACTTGT
GTGCTTGGTGATGCGGGTGGCTGAACAACTGCACTGAGTGAAGGTGATAG
GCTAGTCCGGTTGCTGTCTATCCGTGATTTTGGTGTGTTCGCTCGACGGC
GCGTTAGCAGAGAGTGCCACCACGCATTCACACGTGCGTTGTTGTCACGT
CACGCCTCTCTGCCGCAAATTCGCTCCTCGCCGTACCCCTTTCACCTCTC
GTACAACTAGATAATGGGGAAGACCAAAGACCTGTCGGTACGGAGCTTTA
CCCTGGTGAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13370:338..798+

>mRNA_L-elsbetiae_contig13370.2601.1 ID=mRNA_L-elsbetiae_contig13370.2601.1|Name=mRNA_L-elsbetiae_contig13370.2601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig13370:338..798+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACATCGAAGCCGCTGAGAAGTGGATAGTGGACCTGATCAGGGGCTC
GAAGCTGGACGCCAAGATCGACTCGCGCGACAACAGCGTCATCATGGGCG
GCACGTTCCCCTCCGTGTATCAGCAGATGGACATCGAAGCCGCTGAGAAG
TGGATAGTGGACCTGATCAGGGGCTCGAAGCTGGACGCCAAGATCGACTC
GCGCGACAACAGCGTCATCATGGGCGGCACGTTCCCCTCCGTGTATCAGC
AGATAATGGGGAAGACCAAAGACCTGTCGGTACGGAGCTTTACCCTGGTG
AATATAATGGGGAAGACCAAAGACCTGTCGGTACGGAGCTTTACCCTGGT
GAAT
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