mRNA_L-elsbetiae_contig13366.2597.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13366.2597.1
Unique NamemRNA_L-elsbetiae_contig13366.2597.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13366.2597.1 vs. uniprot
Match: A0A6H5L8W1_9PHAE (Cnd3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.260e-24
Identity = 53/89 (59.55%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 DGIEKDAKAIGSSVRLSQMLGVYFWSLPMASPRARGMLSDSVPHVLRLLRATAEHNAAAEKNNQDEENERMAVIDVPAVKAVRYVKQLL 267
            +G+E+DAKA+GSSVRLSQ+LGVYF SLP A PR R MLS+SV HV+ +LR  AE N AAEKNN+++ N+ +A+I+VP+   V++V++LL
Sbjct:  718 EGLEEDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMGVLRGIAELNVAAEKNNENDANKTVAMIEVPSQDVVKFVRELL 806
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BLAST of mRNA_L-elsbetiae_contig13366.2597.1 vs. uniprot
Match: D7FVL8_ECTSI (Cnd3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.170e-21
Identity = 51/89 (57.30%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 DGIEKDAKAIGSSVRLSQMLGVYFWSLPMASPRARGMLSDSVPHVLRLLRATAEHNAAAEKNNQDEENERMAVIDVPAVKAVRYVKQLL 267
            + +E+DAKA+GSSVRLSQ+LGVYF SLP A PR R MLS+SV +V+ +LR  AE N AAEKNN+++ N+ +A I+VP    V++V++LL
Sbjct:  767 EDLEEDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRYVMGVLRGIAELNVAAEKNNENDANKTVAKIEVPFQDVVKFVRELL 855
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13366.2597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8W1_9PHAE3.260e-2459.55Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FVL8_ECTSI1.170e-2157.30Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13366contigL-elsbetiae_contig13366:1785..3183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue5.8e-19
Seed eggNOG ortholog2880.D7FVL8
Preferred nameYCG1
KEGG koko:K06678
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045786,GO:0045934,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071840,GO:0080090,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:2000241,GO:2000242
EggNOG free text desc.complex. Subunit
EggNOG OGsCOG5218@1,KOG2025@2759
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons3
Model size496
Cds size495
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13366.2597.1prot_L-elsbetiae_contig13366.2597.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13366 1786..3183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.9566538-CDS-L-elsbetiae_contig13366:1785..21001622815509.9566538-CDS-L-elsbetiae_contig13366:1785..2100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13366 1786..2100 -
1691682933.5870373-CDS-L-elsbetiae_contig13366:1785..21001691682933.5870373-CDS-L-elsbetiae_contig13366:1785..2100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13366 1786..2100 -
1622815509.9737186-CDS-L-elsbetiae_contig13366:2507..26331622815509.9737186-CDS-L-elsbetiae_contig13366:2507..2633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13366 2508..2633 -
1691682933.6009855-CDS-L-elsbetiae_contig13366:2507..26331691682933.6009855-CDS-L-elsbetiae_contig13366:2507..2633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13366 2508..2633 -
1622815509.9905307-CDS-L-elsbetiae_contig13366:3129..31831622815509.9905307-CDS-L-elsbetiae_contig13366:3129..3183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13366 3130..3183 -
1691682933.6092136-CDS-L-elsbetiae_contig13366:3129..31831691682933.6092136-CDS-L-elsbetiae_contig13366:3129..3183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13366 3130..3183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13366.2597.1

>prot_L-elsbetiae_contig13366.2597.1 ID=prot_L-elsbetiae_contig13366.2597.1|Name=mRNA_L-elsbetiae_contig13366.2597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
DGIEKDAKAIGSSVRLSQMLGVYFWSLPMASPRARGMLSDSVPHVLRLLR
ATAEHNAAAEKNNQDEENERMAVIDVPAVKAVRYVKQLLESGSCAAAEAA
AAPAPAAGESSSSTKEEAEEGENDEEGKELEEEEEDGQGNTPPSAAAAGE
SSSSTKKAGEEEDEE
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mRNA from alignment at L-elsbetiae_contig13366:1785..3183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13366.2597.1 ID=mRNA_L-elsbetiae_contig13366.2597.1|Name=mRNA_L-elsbetiae_contig13366.2597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1399bp|location=Sequence derived from alignment at L-elsbetiae_contig13366:1785..3183- (Laminarionema elsbetiae ELsaHSoW15)
GATGGGATAGAGAAGGATGCAAAGGCGATCGGCAGCAGCGTGCGGCTCAG
TCAGGTATCGCGCGTCAGTCACATTACAGCAAGCTGTTGATGCCATGATA
TCGGAGGCTGTTTTTTCTGGTGTGTACGGCAGTAATTATCGTGCTACTGT
ACTGCGGGCGCGGAACTCGCTTTAGAGCCCGAGTGCAGGAAGTGCAGCTC
TACATGCCTCGGGAAAAGAAAATAGCAAAAATTGCTATCCTTGGACGGTT
TTCTAGTTCCCACAGTCCAGTATCGATGGACAAAAATTAAACACTTCCAA
GCGATATTGTGATGTTTTTGTGTGTTTATTTTACGTACATTTCACAAGGT
CTTTTCGTTTCACATGGGTCCACTGGATACAAGTCGGAAAGACCATTAGT
TTTTGTGAGCGTATTTTCGTATGTACAGTAGTCAGTCCACACGACACGGT
TCACCTCCCCGCTACAATGACTGCAAACCTCTCCGGCCGCCACGCCACAT
TTCCCGCCGCCTCTGCCCGCCCGCTCACGGCACCGCCCTTCCGCCCCCAG
ATGCTGGGGGTGTACTTCTGGTCTCTCCCAATGGCTAGTCCGAGGGCACG
CGGCATGCTCTCCGACTCCGTGCCGCACGTGTTGCGCCTCCTGCGGGCTA
CCGCGGAGCACAACGCGGCCGCCGAGGTGAGAAAGTCGATATGTTAAGGT
GCGCGTCGTGTATGGTTCTTGACAGCGGTGGACAGGACACCACTTTCGTC
TCGTGCTGCTGGGATGATGCACCCGTTCCTTTCCGCCCTTTGCAGGGCGT
GGCGTATCGTGTTGGGGTCGTGGAACTCCCGGCCGCTGCCCTTGGCAGTT
CTTGACAAGAACGGTCTATGCTGCGCAACGTCCATCTAGCTGGGTGTTCT
TTTTTGCTTGTCTGTCTCTTGAGATTGTGGGGGCCGGGCCGGCAGCTGCT
TGCTCGCTCTCTCTCTTTTGGTTCCGTTTCTACCGCCCGCTCCACGGGTG
TCGGGGTCCGAGCTAACGGCCCGGGTCTCGCTCGACACACGCTCTTCTCT
TTGTCCGCTGCCCTTTCTCTGTTTGTCGGGCAGAAAAATAACCAAGACGA
GGAGAACGAGCGCATGGCGGTGATCGACGTCCCCGCCGTCAAAGCCGTGA
GGTATGTCAAGCAGCTGCTGGAGAGCGGTTCATGCGCTGCGGCCGAGGCT
GCTGCTGCGCCTGCGCCTGCGGCCGGGGAGTCCTCGTCGTCCACCAAGGA
GGAAGCGGAGGAGGGAGAGAACGACGAGGAAGGGAAGGAGTTAGAAGAGG
AGGAGGAGGACGGCCAAGGCAACACGCCGCCTTCGGCTGCGGCCGCCGGC
GAGTCCTCGTCGTCAACCAAGAAGGCAGGGGAGGAAGAGGACGAGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13366:1785..3183-

>mRNA_L-elsbetiae_contig13366.2597.1 ID=mRNA_L-elsbetiae_contig13366.2597.1|Name=mRNA_L-elsbetiae_contig13366.2597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig13366:1785..3183- (Laminarionema elsbetiae ELsaHSoW15)
GATGGGATAGAGAAGGATGCAAAGGCGATCGGCAGCAGCGTGCGGCTCAG
TCAGGATGGGATAGAGAAGGATGCAAAGGCGATCGGCAGCAGCGTGCGGC
TCAGTCAGATGCTGGGGGTGTACTTCTGGTCTCTCCCAATGGCTAGTCCG
AGGGCACGCGGCATGCTCTCCGACTCCGTGCCGCACGTGTTGCGCCTCCT
GCGGGCTACCGCGGAGCACAACGCGGCCGCCGAGATGCTGGGGGTGTACT
TCTGGTCTCTCCCAATGGCTAGTCCGAGGGCACGCGGCATGCTCTCCGAC
TCCGTGCCGCACGTGTTGCGCCTCCTGCGGGCTACCGCGGAGCACAACGC
GGCCGCCGAGAAAAATAACCAAGACGAGGAGAACGAGCGCATGGCGGTGA
TCGACGTCCCCGCCGTCAAAGCCGTGAGGTATGTCAAGCAGCTGCTGGAG
AGCGGTTCATGCGCTGCGGCCGAGGCTGCTGCTGCGCCTGCGCCTGCGGC
CGGGGAGTCCTCGTCGTCCACCAAGGAGGAAGCGGAGGAGGGAGAGAACG
ACGAGGAAGGGAAGGAGTTAGAAGAGGAGGAGGAGGACGGCCAAGGCAAC
ACGCCGCCTTCGGCTGCGGCCGCCGGCGAGTCCTCGTCGTCAACCAAGAA
GGCAGGGGAGGAAGAGGACGAGGAGAAAAATAACCAAGACGAGGAGAACG
AGCGCATGGCGGTGATCGACGTCCCCGCCGTCAAAGCCGTGAGGTATGTC
AAGCAGCTGCTGGAGAGCGGTTCATGCGCTGCGGCCGAGGCTGCTGCTGC
GCCTGCGCCTGCGGCCGGGGAGTCCTCGTCGTCCACCAAGGAGGAAGCGG
AGGAGGGAGAGAACGACGAGGAAGGGAAGGAGTTAGAAGAGGAGGAGGAG
GACGGCCAAGGCAACACGCCGCCTTCGGCTGCGGCCGCCGGCGAGTCCTC
GTCGTCAACCAAGAAGGCAGGGGAGGAAGAGGACGAGGAG
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