mRNA_L-elsbetiae_contig13355.2594.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13355.2594.1
Unique NamemRNA_L-elsbetiae_contig13355.2594.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 472 bits (1214), Expect = 7.790e-159
Identity = 255/330 (77.27%), Postives = 282/330 (85.45%), Query Frame = 1 
Query:  433 RSAPPLRQAAS-LHSSAVLMERGGKHGDSRGEGAGGKG-----ASSDGPKTAPPRSISMTQNDKPDPVDLADLIMSGTSYKEAVRGTEFDDLDPETAQEYDESIRRLEALQQNKLEEYLEEQGNTDLLDKFRTVQGKPKSSEEVGAPSPPKKKK--TVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAARFS 1398
            R A   RQAA+ LHSS +L++RG K G+S               S+D  K A  RS+SMT  DKPD VDLADLIMSGTSY+EAV+GTEFD LD ET++E++ES RRL AL++N+LEEYLEE G TDLLDK R + G+P++SE+   P+PPKKKK  TVEMAQG+WAEIL+HTDRVTKTVKGGMEIQYRALVTVGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACK IGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMA RF+
Sbjct:   41 RPAQHHRQAAAALHSSTMLLDRGDKRGESHNSSVXXXXXXXXXGSADESKPASVRSVSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQTDGPAPPKKKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 450 bits (1157), Expect = 2.720e-151
Identity = 241/309 (77.99%), Postives = 267/309 (86.41%), Query Frame = 1 
Query:  481 VLMERGGKHGDSRGEGAGGKGA---SSDGPKTAPPRSISMTQNDKPDPVDLADLIMSGTSYKEAVRGTEFDDLDPETAQEYDESIRRLEALQQNKLEEYLEEQGNTDLLDKFRTVQGKPKSSEEVGAPSPPKKKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAARFS 1398
            +L++RG K G+S     GGK     S+D  K A  RS+SMT  DKPD VDLADLIMSGTSY+EAV+GTEFD LD ET++E++ES RRL AL++N+LEEYLEE G TDLLDK R + G+P++SE+   P+PPKKKKTVEMAQG+WAEIL+HTDRVTKTVKGGMEIQYRALVTVGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSR       AGKLSRDILYNMGITDGACK IGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMA RF+
Sbjct:    1 MLLDRGDKRGESHNVDNGGKEGDTGSADESKPASVRSVSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQTDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSR-------AGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A6H5LA05_9PHAE (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA05_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 1.750e-71
Identity = 117/126 (92.86%), Postives = 123/126 (97.62%), Query Frame = 1 
Query:  886 MAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTI 1263
            MAQG+WAEIL+HTDRVTKTVKGGMEIQYRALVTVGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGA  ++
Sbjct:    1 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGAAASL 126
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A1Z5K7E2_FISSO (Small subunit ribosomal protein S5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E2_FISSO)

HSP 1 Score: 140 bits (352), Expect = 2.260e-32
Identity = 78/167 (46.71%), Postives = 101/167 (60.48%), Query Frame = 1 
Query:  883 EMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREM 1383
            ++A G+W+E+L+  DR TK  +GG    YRALV  GNLNG GGF IGK+  P  A+  ASRK K   N+ +V+RY+   L  DL GK N  KVY+  R    G+R   L R+IL   GIT+   K+ G RN Y++  A F AL  H  IE IA  RGKR++S+ R M
Sbjct:  234 QLAHGEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKR--NIFFVDRYQGNGLTSDLAGKQNSCKVYL--RSTDDGLRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRAM 396
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A4D9DA75_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA75_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.960e-30
Identity = 66/162 (40.74%), Postives = 105/162 (64.81%), Query Frame = 1 
Query:  892 QGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQR 1377
            +GKW ++L+ TD   K +KGG  + YRALV VGNL G GG+ +GK  +   A   A R AK   NL++++ Y+   +  DL GKHN  ++YI +  P    + G++  D+L  MG+  G  ++IGRRN YS++ A+F A++KH G+E+++R RG+R++S+ +
Sbjct:  730 EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAK--KNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSK 889
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: W7U5Y7_9STRA (30s ribosomal protein s5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5Y7_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.020e-30
Identity = 66/162 (40.74%), Postives = 105/162 (64.81%), Query Frame = 1 
Query:  892 QGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQR 1377
            +GKW ++L+ TD   K +KGG  + YRALV VGNL G GG+ +GK  +   A   A R AK   NL++++ Y+   +  DL GKHN  ++YI +  P    + G++  D+L  MG+  G  ++IGRRN YS++ A+F A++KH G+E+++R RG+R++S+ +
Sbjct:  751 EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAK--KNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSK 910
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A7G8ZJN6_9PROT (30S ribosomal protein S5 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZJN6_9PROT)

HSP 1 Score: 103 bits (258), Expect = 8.400e-22
Identity = 62/160 (38.75%), Postives = 88/160 (55.00%), Query Frame = 1 
Query:  892 QGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 1371
            Q +  + L+H +RV KTVKGG   Q+ ALV VG+  G  GF  GKA     AI +A+ +AK    +V +   +  +L  D  G+H   KV + + PPG+G+ AG   R +L  +G+ D   K+ G  N Y+MI A FDAL   +   SIA  RG ++  L
Sbjct:   21 QDEIVDKLVHINRVAKTVKGGRNFQFAALVVVGDQKGRVGFGQGKAREVPEAIRKATEEAK--KTMVRIPLREGRTLHHDSPGRHGAGKVILRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGTSNPYNMIRATFDALKHQKSPRSIAAKRGMKVADL 178
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A420WMI4_9PROT (30S ribosomal protein S5 n=4 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WMI4_9PROT)

HSP 1 Score: 101 bits (252), Expect = 4.700e-21
Identity = 60/169 (35.50%), Postives = 94/169 (55.62%), Query Frame = 1 
Query:  865 KKKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 1371
            ++ K  E    ++ + L+H +RV KTVKGG  + + ALV VG+  G  GF  GKA     AI +A+ +AK    ++ V   +  +L  D+ G+H   K+ + S PPG+G+ AG   R +L  +G+ D   K++G  N Y+M+ A FDAL +      IA  RGK++  +
Sbjct:    7 RRNKRDEEQDNEFIDRLVHINRVAKTVKGGRNMSFAALVIVGDEKGRVGFGKGKAREVPEAIRKATEEAK--KTMIRVPLREGRTLHHDVRGRHGAGKIVMRSAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRMESPRMIANKRGKKVAEI 173
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A848V710_9PROT (30S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V710_9PROT)

HSP 1 Score: 101 bits (251), Expect = 6.400e-21
Identity = 59/153 (38.56%), Postives = 88/153 (57.52%), Query Frame = 1 
Query:  913 LIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 1371
            L+H +RV KTVKGG  + + ALV VG+  G  GF  GKA     AI +A+ +AK    ++ V   +  +L  DL G+H   K+ + + PPG+G+ AG   R +L  +G+ D   K++G  N Y+M+ A FDAL +     +IA  RGK++  L
Sbjct:   21 LVHINRVAKTVKGGRNMSFAALVVVGDEKGRVGFGKGKAREVPEAIRKATEEAKR--TMIRVPLREGRTLHHDLKGRHGAGKIVMRAAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRAESPRTIAAKRGKKVGDL 171
[Close]
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: RS5_MARMM (30S ribosomal protein S5 n=8 Tax=Maricaulis TaxID=74317 RepID=RS5_MARMM)

HSP 1 Score: 100 bits (250), Expect = 1.180e-20
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 1 
Query:  913 LIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 1371
            L+H +RV KTVKGG   Q+ ALV VG+  G  GF  GKA     AI +A+ +AK   N++ V   +  +L  D  G+H   KV + + PPG+G+ AG   R +L  +GI D   K++G  N Y+MI A  DAL       S+A  RG ++  L
Sbjct:   35 LVHINRVAKTVKGGRNFQFAALVVVGDTKGRVGFGQGKAREVPEAIRKATDEAK--KNMIRVPLREGRTLHHDGKGRHGAGKVVLRAAPPGTGVIAGGPMRAVLETLGIQDVVAKSVGTSNPYNMIRATMDALKLQSSPRSVAAKRGLKVGDL 185
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY3_ECTSI7.790e-15977.27S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI2.720e-15177.99S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5LA05_9PHAE1.750e-7192.86S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
A0A1Z5K7E2_FISSO2.260e-3246.71Small subunit ribosomal protein S5 n=2 Tax=Fistuli... [more]
A0A4D9DA75_9STRA1.960e-3040.74Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U5Y7_9STRA2.020e-3040.7430s ribosomal protein s5 n=1 Tax=Nannochloropsis g... [more]
A0A7G8ZJN6_9PROT8.400e-2238.7530S ribosomal protein S5 n=3 Tax=Alphaproteobacter... [more]
A0A420WMI4_9PROT4.700e-2135.5030S ribosomal protein S5 n=4 Tax=Robiginitomaculac... [more]
A0A848V710_9PROT6.400e-2138.5630S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=... [more]
RS5_MARMM1.180e-2039.8730S ribosomal protein S5 n=8 Tax=Maricaulis TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13355contigL-elsbetiae_contig13355:258..5046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score475.3
Seed ortholog evalue2.3e-131
Seed eggNOG ortholog2880.D7FTY3
Preferred nameMRPS5
KEGG koko:K02988,ko:K14026
KEGG Pathwayko03010,ko04141,map03010,map04141
KEGG ModuleM00178,M00179,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG2646@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons8
Model size2106
Cds size1017
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13355.2594.1prot_L-elsbetiae_contig13355.2594.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13355 963..4662 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.4187925-UTR-L-elsbetiae_contig13355:257..9621622815509.4187925-UTR-L-elsbetiae_contig13355:257..962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13355 258..962 -
1691682933.2361555-UTR-L-elsbetiae_contig13355:257..9621691682933.2361555-UTR-L-elsbetiae_contig13355:257..962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13355 258..962 -
1622815509.5631874-UTR-L-elsbetiae_contig13355:4662..50461622815509.5631874-UTR-L-elsbetiae_contig13355:4662..5046Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13355 4663..5046 -
1691682933.3270557-UTR-L-elsbetiae_contig13355:4662..50461691682933.3270557-UTR-L-elsbetiae_contig13355:4662..5046Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13355 4663..5046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.4317496-CDS-L-elsbetiae_contig13355:962..11121622815509.4317496-CDS-L-elsbetiae_contig13355:962..1112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 963..1112 -
1691682933.2470038-CDS-L-elsbetiae_contig13355:962..11121691682933.2470038-CDS-L-elsbetiae_contig13355:962..1112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 963..1112 -
1622815509.445014-CDS-L-elsbetiae_contig13355:1504..15971622815509.445014-CDS-L-elsbetiae_contig13355:1504..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 1505..1597 -
1691682933.2556775-CDS-L-elsbetiae_contig13355:1504..15971691682933.2556775-CDS-L-elsbetiae_contig13355:1504..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 1505..1597 -
1622815509.4605615-CDS-L-elsbetiae_contig13355:1814..19081622815509.4605615-CDS-L-elsbetiae_contig13355:1814..1908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 1815..1908 -
1691682933.27166-CDS-L-elsbetiae_contig13355:1814..19081691682933.27166-CDS-L-elsbetiae_contig13355:1814..1908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 1815..1908 -
1622815509.472159-CDS-L-elsbetiae_contig13355:2552..26771622815509.472159-CDS-L-elsbetiae_contig13355:2552..2677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 2553..2677 -
1691682933.279392-CDS-L-elsbetiae_contig13355:2552..26771691682933.279392-CDS-L-elsbetiae_contig13355:2552..2677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 2553..2677 -
1622815509.4839442-CDS-L-elsbetiae_contig13355:3162..32581622815509.4839442-CDS-L-elsbetiae_contig13355:3162..3258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 3163..3258 -
1691682933.287843-CDS-L-elsbetiae_contig13355:3162..32581691682933.287843-CDS-L-elsbetiae_contig13355:3162..3258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 3163..3258 -
1622815509.499221-CDS-L-elsbetiae_contig13355:3518..35791622815509.499221-CDS-L-elsbetiae_contig13355:3518..3579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 3519..3579 -
1691682933.2990253-CDS-L-elsbetiae_contig13355:3518..35791691682933.2990253-CDS-L-elsbetiae_contig13355:3518..3579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 3519..3579 -
1622815509.5100732-CDS-L-elsbetiae_contig13355:4074..42321622815509.5100732-CDS-L-elsbetiae_contig13355:4074..4232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 4075..4232 -
1691682933.309769-CDS-L-elsbetiae_contig13355:4074..42321691682933.309769-CDS-L-elsbetiae_contig13355:4074..4232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 4075..4232 -
1622815509.5530818-CDS-L-elsbetiae_contig13355:4422..46621622815509.5530818-CDS-L-elsbetiae_contig13355:4422..4662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 4423..4662 -
1691682933.318374-CDS-L-elsbetiae_contig13355:4422..46621691682933.318374-CDS-L-elsbetiae_contig13355:4422..4662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13355 4423..4662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13355.2594.1

>prot_L-elsbetiae_contig13355.2594.1 ID=prot_L-elsbetiae_contig13355.2594.1|Name=mRNA_L-elsbetiae_contig13355.2594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
MYMPHVCVCDDRCRSTRSAPPLRQAASLHSSAVLMERGGKHGDSRGEGAG
GKGASSDGPKTAPPRSISMTQNDKPDPVDLADLIMSGTSYKEAVRGTEFD
DLDPETAQEYDESIRRLEALQQNKLEEYLEEQGNTDLLDKFRTVQGKPKS
SEEVGAPSPPKKKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVT
VGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDL
VGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYS
MIYAMFDALAKHRGIESIARGRGKRILSLQREMAARFS*
back to top

mRNA from alignment at L-elsbetiae_contig13355:258..5046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13355.2594.1 ID=mRNA_L-elsbetiae_contig13355.2594.1|Name=mRNA_L-elsbetiae_contig13355.2594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4789bp|location=Sequence derived from alignment at L-elsbetiae_contig13355:258..5046- (Laminarionema elsbetiae ELsaHSoW15)
CTCGAATGTCTTTGTCATAGCCATATCAAACACGTGCCAAAAAATCAGGT
CCCAATTCGTAAAAACCGCGTGGGAAATCGCTGCCAACCGTTTTGTCGGT
GTCTAGCTCAATCCAGCTTGTAGTGTAGACTACATATCTATTTAGGTGTG
GAGCCGGCTTTGTGCCCTTTTGCACCGGACCCACCAGCACAATACAAGCA
ATATTGCCACACACCACCAGAGAAATAATGGATGGCAGTACTTCTATACA
ATATAAGTGCACGCTTGACTCGAGCGCCGTCGCTGATCGATATGCATGTA
ATTGTGTACCGGCACTCCTGCACTGCTTTTCGTCCTGTCTGTGACTAACT
CCTCGTGTACGTACCTACAAATGTTTATGTGTTTATGTACATGCCGCATG
TATGTGTGTGTGATGACCGCTGCCGTAGCACCCGAAGTGCACCACCACTG
CGGCAGGCGGCCTCTTTGCATAGCAGCGCGGTGCTCATGGAGCGTGGAGG
CAAGCACGGAGATTCCCGTGGCGAGGGAGCCGGTGGGAAAGGTGCTAGCT
CGGATGGGCCAAAGACGGCACCCCCGAGGAGTATATCGATGACGCAGAAC
GACAAGCCTGACCCCGTAGACCTGGTGAGTGTTTTTGCTTTCGCGCTTCC
CGCGTGGCGGCTGGCTCCCTCCGTTTTCTTTTTTGCTGCCAAAGCCAGCC
TCACGGGTGCACAGCATCGTTGCCGAGCACACGATCAGTTACGCTCTTGT
AAGCAAGAATAGATGAATGGATGCGTGCGCTGCTGCTTTGTTTCGACATT
TGAAATAAACACAGGCGGACTTGATCATGTCTGGCACGAGCTACAAGGAG
GCTGTGCGAGGGACGGAGTTTGACGACTTGGACCCAGAAACGGCTCAGGA
GTACGACGAGTCGATCCGACGCTTGGAGGCCCTGCAACAGAACAAGCTCG
AGGAGTACCTGGAGGAGCAAGGGTGAGTCACTGCACGCCCTCTGGCTGCC
GCTCTCTGTTGGAAAACCTCGTGGGTGGAAAGGGGTGCACGGTGTGATGT
CAGATTCCCGCCTCTCGGGCTTGACCTCAGTGTCGATCATCGCGATTCTT
TGTTATGCCAAGCGTTGCTCGTTTTGTCCTATTTAGTGCTTCAGTGGTTG
GCGCGTGCACACAGCAGCGGTGGTAGGAAGCTTTTCAAGTGCTACCCGGC
CCTCAGTAGCACACAGCAACAAACGCATCTTGGCACAGACGTTGTTCGTG
CCGGCAACCAGAAGAGTGGCAATTGTGCCGGCAGAAGGAAGGCCTTGATG
TTACATATGCTCCTTGGTTTGCTCGGCCGCTTTGATTTTATGCCGCGACG
TGTGCGAGTGAAATACCATTGGCCTTATATGTACGTCCAACCTTCCGCGC
GCTGCTTATGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTCCTCGA
TCAAAAATTCTTGTCAGGAACACGGATCTTCTGGACAAGTTCCGCACCGT
CCAGGGCAAGCCCAAGAGCTCCGAAGAGGTGAGGACAACAGCAGTGGTAT
GAACACGTGGCCGTTGCCGTCCGTCCGTCACGTGCACACCCGCTCATTTC
CTCGTAGTATCTATCGTGTCATAGTCGGCCGGGGCGAAACGCTTGCCTCC
CGGTGCCGGTGTCACTCGGCATCAAATTCTTACCATCATTGTGCGGCGTG
TCTCGAGGCAACTTATCTATGTATATGTTTGTGTGGCGATTTTTCTCTTT
TTGTTGTCTTTGTCGGCCTCGCCAACGTTTTGATGCAGGTCGGGGCCCCT
TCCCCGCCCAAGAAGAAGAAAACGGTGGAAATGGCGCAGGGGAAGTGGGC
CGAGATTTTGATTCACACCGACCGAGTCACGAAGGTATGTATGCATGCTT
GCAGCACGGGCGGCGGGTGCGTCGGGTGTGGTGTACTTTATTGGTGCTTC
TTGTGTTAATAGAAGTATACCGATTCGCCGCTCCACAGACTGGCGATGGT
CTACTACTGCGTACTGCTGTTTTGCCCTTACATTTATTTGATGCAGTGCC
TCACGGTCATAGTATCGAGTGTTCTTTTATTTGTTTCCCCACTTTTCTGG
GGAAGGATCGATATCGATCGGCGCCAGTTGGGCGAGACTAGTGTGCCTAT
TGTATGTACAAGATGACAGTAGTAGTCTAGCCCGAGAGTACTCGTGTTGA
ACAATAGGGCCGACTTTGAAACCTGTCTTTCCGAGAGGTGGCACATATCC
ATTACAACTTCTTGCCACCTTATTGCGTTTAGTCCCGCAAACGACGCAGA
TCATTCACAGACGTCAGCTACGCTTGTGCCCCTTCGCATGCTTGAAACTG
CTGCACAACTCTCGCTCAGACCGTCAAAGGCGGTATGGAGATACAGTACA
GGGCCCTGGTGACTGTTGGCAACCTCAACGGCGTTGGAGGATTCGCCATC
GGAAAAGCAGACAGCCCCGCCGTGGCTATCACGGAAGCCAGCCGGTAATA
TGACGGACGTGCACATGTTTCTTCGCGTTCAAGCACACGCCGTTGGTTGC
CCTTGCTGTATATAACCACAACCTTGATTTGATCGATCATGCACGCTCGC
CTGGCGACACCCTGGAAGGGTATCGACATATTTCTGTCCGCGCGGCCTCT
GGTTCGTTTTTGATTCGGATGTTCGCCTACTGCTACATACAGGGTTCGCC
AGACTATGTCCGCGTTCCACTTATGTTTGCACTTTTATTTTTGTCGAGAA
TAACGAACCCGTGGATGTGATCCTTGAGGTTGACCGGAAGAGATTCTTCA
TACTTCGAAGCTTTTTGTGTTGTTTTTTTCCTTCTTAATTATCAATTTCC
AGTGCACGATGGGCTCCTTGCCACGAGGGCATCTCGCCAGAGTACGGAAC
CGTGGTCATCACACAGCGAAGTTTATATATAGATATTCATAGCGCTATAA
TACAGACATACTGCTCCACGTGGTTTGAAAAAGGTAGTGAACGCCTGATT
TCGTTTGGTCGCGGTCTATTTGTTAAGCTAAATCGAGACCCGAGCACGAG
TACTCGAACAATGCGTTCGTCATTTCTCCTGCTTTATGTCGCTTCTGCGC
TGACGGGATGTCGTGTGTGCGTTGCCCCCTCTCCACAGAAAAGCGAAGTT
GTTGCCCAACCTCGTGTACGTGGAGCGCTACAAGCAGGCGTCCCTGTGCC
AGGACCTTGTGGGGAAGCACAACGGAAGCAAGGTGGGACCAACATGGAGC
GTAACGCAACGTAACGTAACGAGACGCCACGCGGTTGCGGCCCGCTCTTG
TCCGGGAACGTTCCAATCTTCGGTGAATGGAGTTAGATTCAGCAGTGGTG
TACATATGTAGATGCCCCTGTAAATGTCGGTGTTTTGATTGGACGCGGCT
GACATTCCCTCCCCCCCCCCCCTTTTTTTCTTGTGGGCTTGCTTCGCAGG
TGTACATCTGGTCTAGGCCGCCAGGATCTGGCATGAGAGCGGGCAAGCTT
TCGCGGGATATCTTGTACAACATGGGCATCACGGACGGCGCGGTGAGTTA
AAGAAGCAACCAGCAACATGGGCGGTTGGCTGTGGCTGGTATCTTCGAGG
AAGATGATAAATAAACTGGAAAGCGGGACCGCTTGTTGGAGAACTTTCCA
AAAAAATGAAAAAAAGTGGTCCAAAACGCGGCGGAATTACCCTGTAGATT
TTTTTTAGATAAGCAAGAGCAGACAAATCTCACCTAATAAGTAGATTTAG
AACTGCGTATTGTAGTGGGACACTTGTTGGGAGAGCTTTTAAAACCGATT
TTTCGGAATTCAACTTCCTGTTCAGCTTCATCGCGAGCCTGGCGTGATTG
TGAGCATCAATAGTACATCGCGTGCAAGACCGTTGACACTCCTCCTCCTC
CTCACCCACCGCACGCGCCACCCCCCTCGTGCAGTGCAAGACAATCGGGA
GGCGCAATAAGTACTCCATGATCTACGCCATGTTCGATGCCCTCGCCAAG
CACCGCGGGATTGAGAGCATAGCGAGGGGGCGAGGAAAACGCATCTTGTC
TCTCCAGCGAGAGATGGCGGCTCGGTTCTCCTAGACGAGCGCGGAAGGCG
TTGGTTGGCGTGGCGGGTGGTCGATTTGTTTGCAGTTGGAGCGGAGAGGG
CGAACAGTGTTGATTCACGTACAGGTGTTGGTGGCCGATACAAGCAAGTG
CTCTTCCAATCCTGCGGTGAAAGGGGGCACGTGGATTGAGAAAGCGGGAG
GCATCCTGGCTGTAGTTCCCGGCGGTTTCGGTTTCACGAGCAAACTCTTG
GCGTGTGTTTGTACGAAGTTTACGATAAAGAGCACACGGGCTGGTTACTA
TAGCAAGGCTAGCGGCGAGCACTTTATGATGGTTGACGTGTTGAGATGAG
GAGTATGGTCACCGGGCTGAAGGCTTCTGGCGTGGATGCATCGCCATCAC
CTCCTAGCCTCCTAGCTTGGTTTTTGAAACGACTTCAAGGGGGCGTCAGG
CGAGCGCAGCAAGCCAGTGATCGTAAGGCAATTGCTTTGTCCCTCGCACT
TGTATATCAACAAGGTACAAAGCAGTACGGGTGACTGCGACGTCTACCTT
ATAGGGTCTGTCTGGTTAAATTTTCCCACAACGTGACCCCCACTTTTTCT
CGCTTGTTTTTGAGAGTTGTAACGCGAAAAAAAGTTGAGAAGAACCGCAC
GGTCGAGAAGCATCGAAATCCGGTGTCGAAAAAAAATCGGTGAAAATGGC
CGTTTTCGGGCGAAAATTACGCCGAAATTACCCCGAACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13355:258..5046-

>mRNA_L-elsbetiae_contig13355.2594.1 ID=mRNA_L-elsbetiae_contig13355.2594.1|Name=mRNA_L-elsbetiae_contig13355.2594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig13355:258..5046- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACATGCCGCATGTATGTGTGTGTGATGACCGCTGCCGTAGCACCCG
AAGTGCACCACCACTGCGGCAGGCGGCCTCTTTGCATAGCAGCGCGGTGC
TCATGGAGCGTGGAGGCAAGCACGGAGATTCCCGTGGCGAGGGAGCCGGT
GGGAAAGGTGCTAGCTCGGATGGGCCAAAGACGGCACCCCCGAGGAGTAT
ATCGATGACGCAGAACGACAAGCCTGACCCCGTAGACCTGATGTACATGC
CGCATGTATGTGTGTGTGATGACCGCTGCCGTAGCACCCGAAGTGCACCA
CCACTGCGGCAGGCGGCCTCTTTGCATAGCAGCGCGGTGCTCATGGAGCG
TGGAGGCAAGCACGGAGATTCCCGTGGCGAGGGAGCCGGTGGGAAAGGTG
CTAGCTCGGATGGGCCAAAGACGGCACCCCCGAGGAGTATATCGATGACG
CAGAACGACAAGCCTGACCCCGTAGACCTGGCGGACTTGATCATGTCTGG
CACGAGCTACAAGGAGGCTGTGCGAGGGACGGAGTTTGACGACTTGGACC
CAGAAACGGCTCAGGAGTACGACGAGTCGATCCGACGCTTGGAGGCCCTG
CAACAGAACAAGCTCGAGGAGTACCTGGAGGAGCAAGGGCGGACTTGATC
ATGTCTGGCACGAGCTACAAGGAGGCTGTGCGAGGGACGGAGTTTGACGA
CTTGGACCCAGAAACGGCTCAGGAGTACGACGAGTCGATCCGACGCTTGG
AGGCCCTGCAACAGAACAAGCTCGAGGAGTACCTGGAGGAGCAAGGGAAC
ACGGATCTTCTGGACAAGTTCCGCACCGTCCAGGGCAAGCCCAAGAGCTC
CGAAGAGGAACACGGATCTTCTGGACAAGTTCCGCACCGTCCAGGGCAAG
CCCAAGAGCTCCGAAGAGGTCGGGGCCCCTTCCCCGCCCAAGAAGAAGAA
AACGGTGGAAATGGCGCAGGGGAAGTGGGCCGAGATTTTGATTCACACCG
ACCGAGTCACGAAGGTCGGGGCCCCTTCCCCGCCCAAGAAGAAGAAAACG
GTGGAAATGGCGCAGGGGAAGTGGGCCGAGATTTTGATTCACACCGACCG
AGTCACGAAGACCGTCAAAGGCGGTATGGAGATACAGTACAGGGCCCTGG
TGACTGTTGGCAACCTCAACGGCGTTGGAGGATTCGCCATCGGAAAAGCA
GACAGCCCCGCCGTGGCTATCACGGAAGCCAGCCGACCGTCAAAGGCGGT
ATGGAGATACAGTACAGGGCCCTGGTGACTGTTGGCAACCTCAACGGCGT
TGGAGGATTCGCCATCGGAAAAGCAGACAGCCCCGCCGTGGCTATCACGG
AAGCCAGCCGAAAAGCGAAGTTGTTGCCCAACCTCGTGTACGTGGAGCGC
TACAAGCAGGCGTCCCTGTGCCAGGACCTTGTGGGGAAGCACAACGGAAG
CAAGAAAAGCGAAGTTGTTGCCCAACCTCGTGTACGTGGAGCGCTACAAG
CAGGCGTCCCTGTGCCAGGACCTTGTGGGGAAGCACAACGGAAGCAAGGT
GTACATCTGGTCTAGGCCGCCAGGATCTGGCATGAGAGCGGGCAAGCTTT
CGCGGGATATCTTGTACAACATGGGCATCACGGACGGCGCGGTGTACATC
TGGTCTAGGCCGCCAGGATCTGGCATGAGAGCGGGCAAGCTTTCGCGGGA
TATCTTGTACAACATGGGCATCACGGACGGCGCGTGCAAGACAATCGGGA
GGCGCAATAAGTACTCCATGATCTACGCCATGTTCGATGCCCTCGCCAAG
CACCGCGGGATTGAGAGCATAGCGAGGGGGCGAGGAAAACGCATCTTGTC
TCTCCAGCGAGAGATGGCGGCTCGGTTCTCCTAGTGCAAGACAATCGGGA
GGCGCAATAAGTACTCCATGATCTACGCCATGTTCGATGCCCTCGCCAAG
CACCGCGGGATTGAGAGCATAGCGAGGGGGCGAGGAAAACGCATCTTGTC
TCTCCAGCGAGAGATGGCGGCTCGGTTCTCCTAG
back to top