mRNA_L-elsbetiae_contig13353.2593.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13353.2593.1
Unique NamemRNA_L-elsbetiae_contig13353.2593.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A6H5K5F4_9PHAE (AAA_16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F4_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.000e-46
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:   67 VLAPLGGLVERWPGRGEQIVELAGLIGESTDGVPVPPLLVTGPPCSGKTSVVRAVLEHRGCSYVYVNCAEVVQRKDLLEAVVEQVAGGSR 336
             L PL GL ERWPGR ++I ELAGLIGESTDGVPVPPLLVTGPPC+GKTSVVRAVL+HRGCSY YVNCAEVVQR+DLLEA+VEQVAGGSR
Sbjct:   56 ALVPLAGLEERWPGRKQEISELAGLIGESTDGVPVPPLLVTGPPCTGKTSVVRAVLDHRGCSYAYVNCAEVVQRRDLLEALVEQVAGGSR 145
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: D7FZ80_ECTSI (Putative Mn/Fe superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ80_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 7.140e-45
Identity = 77/92 (83.70%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:   61 GRVLAPLGGLVERWPGRGEQIVELAGLIGESTDGVPVPPLLVTGPPCSGKTSVVRAVLEHRGCSYVYVNCAEVVQRKDLLEAVVEQVAGGSR 336
            G  L PL GL ERWPGR ++I ELAGLIGESTDGVPVPPLLVTGPPC+GKTSVVRAVL+HRGCSY YVNCAEVVQR+DLLE +VEQVAGGSR
Sbjct:   98 GDALVPLAGLEERWPGRKQEISELAGLIGESTDGVPVPPLLVTGPPCTGKTSVVRAVLDHRGCSYAYVNCAEVVQRRDLLEVLVEQVAGGSR 189
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A836CAU5_9STRA (Origin recognition complex subunit 5 C-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.940e-13
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:   88 LVERWPGRGEQIVELAGLIGESTDGVPVPPLLVTGPPCSGKTSVVRAVLEHRGCSYVYVNCAEVVQRKDLLEAVVEQVAGGSR 336
            L  RW  RG Q  +LAGL+G + +  P  P++V GPPC+GK+  +R VLE   C Y  V+C + +  + L++AVVEQ+    R
Sbjct:   90 LGSRWLARGPQFQQLAGLMGGAAE--PCVPIIVQGPPCTGKSGAIRDVLEESSCPYTLVDCKQALSLRQLMQAVVEQLVSSKR 170
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A7S3XC80_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XC80_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-8
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   79 LGGLVERWPGRGEQIVELAGLIGESTDGVPVPPLLVTGPPCSGKTSVVRAVLEHRGCSYVYVNCAEVVQRKDLLEAVVEQVAGGSR 336
            LG L  RW  R +QI EL GL+G   +  P P LL+ G   +GKTS+V+ +LE  G  Y YV+C E    + +  AV+ Q+    R
Sbjct:   33 LGKLCTRWVAREKQIQELIGLLGTGCE--PAPSLLICGGGSTGKTSIVKDLLETVGARYAYVSCLESATPRQVFHAVLTQLKQNKR 116
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A7S0R4A6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R4A6_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 7.260e-7
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   88 LVERWPGRGEQIVELAGLIGESTDGVPVPP----LLVTGPPCSGKTSVVRAVLEHRGCSYVYVNCAEVVQRKDLLEAVV 312
            L E WPGR EQI  L G++G++    P PP    L V G P +GKTSVV+AVLE     + YV+C     +  L +A++
Sbjct:   15 LYEEWPGRREQIDALLGILGDANQ--PEPPEHASLFVFGGPTTGKTSVVKAVLEMYNRPFAYVSCLTCTTQSLLFKALL 91
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A162UU18_PHYB8 (AAA_16 domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162UU18_PHYB8)

HSP 1 Score: 55.8 bits (133), Expect = 9.980e-7
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   97 RWPGRGEQIVELAGLIGESTDGVPVPPLLVTGPPCSGKTSVVRAVLEH--RGCSYVYVNCAEVVQRKDLLEAVVEQ 318
            R+PGR ++I  L GL+G  +D V VP + + G P SGKTSVV+AV+E   R  S+ +VNC E    + L E  + Q
Sbjct:   15 RYPGRSKEISILLGLMGNPSDAV-VPSVFIYGHPSSGKTSVVKAVMERTLRRSSWAHVNCVERHTPRMLFEHALNQ 89
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A7R8X827_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X827_9CRUS)

HSP 1 Score: 54.7 bits (130), Expect = 2.660e-6
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:   58 RGRVLAPLGGLVERW-------------PGRGEQIVELAGLIGESTDGVPVPPLLVTGPPCSGKTSVVRAVLEHRGCSYVYVNCAEVVQRKDLLEAVVEQV 321
            R  V+APL   + +W             P R  ++  L  L+GE    +P P +++TGPP SGK+ V+R VLE  G ++V++NC E    K L + ++ ++
Sbjct:  303 RADVIAPL---IRKWTAMDKEGRVTPHIPERQNEVSTLLQLLGERMQHLP-PAIIITGPPSSGKSFVMRGVLESTGDAFVFINCIECYTVKLLFQLIILRI 399
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A7C8RE03_ORBOL (AAA_16 domain-containing protein n=9 Tax=Orbiliaceae TaxID=47021 RepID=A0A7C8RE03_ORBOL)

HSP 1 Score: 54.3 bits (129), Expect = 3.390e-6
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   67 VLAPLGGLVERWPGRGEQIVELAGLIGESTDGVPVPPLLVT-GPPCSGKTSVVRAVLEHRGCSYVYVNCAEVVQRKDLLE 303
            +  PL  L  R+P R  QI  LA L+G+  D +P PP+LV  G   +GK+++V+AVLE     Y YV+C E +  + + E
Sbjct:    1 MTGPLESLNARFPCRERQIDGLAALLGQ--DDIPAPPVLVLYGTEATGKSTIVKAVLEEFEIPYAYVSCKECITARHVFE 78
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A068RR16_9FUNG (Origin recognition complex subunit 5 n=2 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RR16_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 9.330e-6
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   88 LVERWPGRGEQIVELAGLIGESTDGVPVPPLLVTGPPCSGKTSVVRAVLEHR--GCSYVYVNCAEVVQRKDLLEAVVEQ 318
            L  ++PGR +QI  L  L+GE +D V +P + + G P SGKTSVVRA+LE       + ++NC E    + L E  + Q
Sbjct:    6 LEAQFPGRSKQIATLLQLMGEPSDAV-LPSIFIYGHPSSGKTSVVRAILEKTLARSMWAFINCIECHTPRMLFEHTINQ 83
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BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Match: A0A4P9XNZ4_9FUNG (AAA ATPase domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XNZ4_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.960e-5
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:   88 LVERWPGRGEQIVELAGLIGESTDGVPVPP-LLVTGPPCSGKTSVVRAVLEHRGCS-YVYVNCAEVVQRKDLLEAVVEQVAG 327
            L ER+PGR  ++ +L  L+G+   G P+PP + V+G   +GKT+VVRA LEH     + YVNC +    + L E  + Q AG
Sbjct:   16 LEERFPGRQRELGQLHNLLGKP--GSPLPPAIFVSGHSATGKTTVVRAFLEHLPRRRWAYVNCVDRFAPRLLFEDALNQFAG 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13353.2593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K5F4_9PHAE1.000e-4685.56AAA_16 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FZ80_ECTSI7.140e-4583.70Putative Mn/Fe superoxide dismutase n=1 Tax=Ectoca... [more]
A0A836CAU5_9STRA8.940e-1342.17Origin recognition complex subunit 5 C-terminus-do... [more]
A0A7S3XC80_9CHLO1.280e-840.70Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S0R4A6_9CHLO7.260e-743.04Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A162UU18_PHYB89.980e-744.74AAA_16 domain-containing protein n=1 Tax=Phycomyce... [more]
A0A7R8X827_9CRUS2.660e-632.67Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A7C8RE03_ORBOL3.390e-640.00AAA_16 domain-containing protein n=9 Tax=Orbiliace... [more]
A0A068RR16_9FUNG9.330e-640.51Origin recognition complex subunit 5 n=2 Tax=Licht... [more]
A0A4P9XNZ4_9FUNG1.960e-541.46AAA ATPase domain-containing protein (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13353contigL-elsbetiae_contig13353:2969..4560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue7.7e-07
Seed eggNOG ortholog296587.XP_002499451.1
Preferred nameORC5
KEGG koko:K02607
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000808,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005664,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0031974,GO:0031981,GO:0032991,GO:0034285,GO:0034641,GO:0034645,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1990837
EggNOG free text desc.Origin recognition complex (ORC) subunit 5 C-terminus
EggNOG OGs34IHU@3041,37P3D@33090,KOG2543@1,KOG2543@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03032
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.281034-CDS-L-elsbetiae_contig13353:2968..31181622815509.281034-CDS-L-elsbetiae_contig13353:2968..3118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13353 2969..3118 +
1691682933.2111468-CDS-L-elsbetiae_contig13353:2968..31181691682933.2111468-CDS-L-elsbetiae_contig13353:2968..3118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13353 2969..3118 +
1622815509.2946198-CDS-L-elsbetiae_contig13353:4374..45601622815509.2946198-CDS-L-elsbetiae_contig13353:4374..4560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13353 4375..4560 +
1691682933.2265587-CDS-L-elsbetiae_contig13353:4374..45601691682933.2265587-CDS-L-elsbetiae_contig13353:4374..4560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13353 4375..4560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13353.2593.1prot_L-elsbetiae_contig13353.2593.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13353 2969..4560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13353.2593.1

>prot_L-elsbetiae_contig13353.2593.1 ID=prot_L-elsbetiae_contig13353.2593.1|Name=mRNA_L-elsbetiae_contig13353.2593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
TDEGAAGGGDGGGGAGVGGRGRVLAPLGGLVERWPGRGEQIVELAGLIGE
STDGVPVPPLLVTGPPCSGKTSVVRAVLEHRGCSYVYVNCAEVVQRKDLL
EAVVEQVAGGSR
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mRNA from alignment at L-elsbetiae_contig13353:2969..4560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13353.2593.1 ID=mRNA_L-elsbetiae_contig13353.2593.1|Name=mRNA_L-elsbetiae_contig13353.2593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1592bp|location=Sequence derived from alignment at L-elsbetiae_contig13353:2969..4560+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGACGAAGGAGCAGCAGGGGGGGGTGATGGCGGCGGTGGAGCCGGTGT
TGGTGGCAGGGGTCGTGTCCTGGCCCCGCTGGGAGGCTTGGTGGAGAGGT
GGCCCGGGCGCGGGGAGCAGATCGTCGAGCTCGCCGGGCTGATCGGAGAG
GTGCGAGATACCGTAGGTGACACAAGATACCACACCCCCTGGACAGGTTT
TCAAAGCTCAATTCCTCCCCAGCAAGGAAAGTGCTAGTGCCGAAAAGGAG
TGGCGTCGGAAAGATCGAGTCGAGGGCTGTCCGAAAATGTGCCGTTTGGT
GCTGGCACCCTCTTCGTTACGGAGTAATGGATCTCTCAAATTCGATCCAG
GGGGTGTGGTATCTTGTGTCACCTACGGTAGTCTGTCTATTGTGTGTACC
CATGGTTTTCGCCTTCAGCTAACATACGGAGTAGGGGGTGAAGTGTATGT
ATGTATGTATGCTGTCTTCTGTCTTCACGTTAAAAACCGTTCCGATCTCT
CCATCCAGTGCCTCTCAATGTCCGTACTAATCCAACACTTGATGCAGCCA
ATTCCCGTGGTCACAGCAGGCTACATTACTTATACCCAAGAAAAGGTACA
CGAAAAATAAAAATGAAGTGTGGAAGCCGAGAAAGGGGGGTCGCTGGTTG
GGGACGGTCTTACTAGTCTAAGCAGGGTGTTCGGCTTCAGCTATTAACAT
AGGAGATAAAGTGTGGAAGCCAGGAAAGGGGCGTCGGTGGTTGGGGTGGT
TACCGTAGGTGACACAAGATACCACACCCCCTGAACAGATTTTCAAAGCT
CGATTCCTCCCCAGCAAGAAGAGCGCCAGTGCCGAAAGGGGGTGCGTTGG
AAAGATCTAGTCGAGGGCTGTCCGAAGATACGTCGTTTGGTGCTGGCACC
TGCTTCGTTACGGAGCAATGGAGCTCCAAAATTCGGCTCAGGAGGTGTGG
TATCTTGTGTCACCTACTGTAGGGTTATGGTTGGGGGTTATTTTTCTAGA
AAAACTTAATTTCCAGCGTATGTAGGCGGTCCGTTGAGGAGGAAAGAAAG
AGACGGGATAGGGGCGGGATAGGGGCGGGATAGGGCTGTGGGGGCGGGAT
AGGGGCGGCGGATTGGCGCGCCTCTCACGTGGTGTGTGTGTTTTCTTGTT
TGCGCGGCCGCGTATTCTATGTATATCTTGATATAGATGCAAGGTTCCCC
GTTCCGGCAGGTCGGTGCACGCTCTCCCCGGGGGTGACGCAAGTCCAGAT
GAAACCCCCACCGAGGTTGTGAAGGCGCACTCCTTCCCTGGTTTCCTTTT
TCACCCCCCTTCCTTCCTTCCTTCTTTCCTTCCTCCCCCCCCCCCCCCCG
CAACGTCCCTACTCACTATGATTCCACCACCCCCCCTCTCAATCTACAAT
CTACAGTCGACGGACGGGGTCCCGGTACCCCCCTTGCTAGTGACGGGCCC
CCCGTGCAGCGGGAAGACTTCGGTGGTGAGGGCCGTCCTGGAGCACCGCG
GCTGCTCCTACGTGTACGTGAACTGCGCCGAGGTGGTTCAGCGGAAGGAC
CTGCTCGAGGCCGTCGTCGAGCAAGTCGCCGGGGGGTCCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13353:2969..4560+

>mRNA_L-elsbetiae_contig13353.2593.1 ID=mRNA_L-elsbetiae_contig13353.2593.1|Name=mRNA_L-elsbetiae_contig13353.2593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig13353:2969..4560+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGACGAAGGAGCAGCAGGGGGGGGTGATGGCGGCGGTGGAGCCGGTGT
TGGTGGCAGGGGTCGTGTCCTGGCCCCGCTGGGAGGCTTGGTGGAGAGGT
GGCCCGGGCGCGGGGAGCAGATCGTCGAGCTCGCCGGGCTGATCGGAGAG
ACGGACGAAGGAGCAGCAGGGGGGGGTGATGGCGGCGGTGGAGCCGGTGT
TGGTGGCAGGGGTCGTGTCCTGGCCCCGCTGGGAGGCTTGGTGGAGAGGT
GGCCCGGGCGCGGGGAGCAGATCGTCGAGCTCGCCGGGCTGATCGGAGAG
TCGACGGACGGGGTCCCGGTACCCCCCTTGCTAGTGACGGGCCCCCCGTG
CAGCGGGAAGACTTCGGTGGTGAGGGCCGTCCTGGAGCACCGCGGCTGCT
CCTACGTGTACGTGAACTGCGCCGAGGTGGTTCAGCGGAAGGACCTGCTC
GAGGCCGTCGTCGAGCAAGTCGCCGGGGGGTCCAGGTCGACGGACGGGGT
CCCGGTACCCCCCTTGCTAGTGACGGGCCCCCCGTGCAGCGGGAAGACTT
CGGTGGTGAGGGCCGTCCTGGAGCACCGCGGCTGCTCCTACGTGTACGTG
AACTGCGCCGAGGTGGTTCAGCGGAAGGACCTGCTCGAGGCCGTCGTCGA
GCAAGTCGCCGGGGGGTCCAGG
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