mRNA_L-elsbetiae_contig1334.2583.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1334.2583.1
Unique NamemRNA_L-elsbetiae_contig1334.2583.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1334.2583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1334contigL-elsbetiae_contig1334:16790..17998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size362
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1334.2583.1prot_L-elsbetiae_contig1334.2583.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1334 16796..17998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.2162156-UTR-L-elsbetiae_contig1334:16789..167951622815508.2162156-UTR-L-elsbetiae_contig1334:16789..16795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1334 16790..16795 +
1691682932.4919786-UTR-L-elsbetiae_contig1334:16789..167951691682932.4919786-UTR-L-elsbetiae_contig1334:16789..16795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1334 16790..16795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.2288764-CDS-L-elsbetiae_contig1334:16795..168311622815508.2288764-CDS-L-elsbetiae_contig1334:16795..16831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1334 16796..16831 +
1691682932.5023308-CDS-L-elsbetiae_contig1334:16795..168311691682932.5023308-CDS-L-elsbetiae_contig1334:16795..16831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1334 16796..16831 +
1622815508.2407749-CDS-L-elsbetiae_contig1334:17680..179981622815508.2407749-CDS-L-elsbetiae_contig1334:17680..17998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1334 17681..17998 +
1691682932.5100896-CDS-L-elsbetiae_contig1334:17680..179981691682932.5100896-CDS-L-elsbetiae_contig1334:17680..17998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1334 17681..17998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1334.2583.1

>prot_L-elsbetiae_contig1334.2583.1 ID=prot_L-elsbetiae_contig1334.2583.1|Name=mRNA_L-elsbetiae_contig1334.2583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MRLHAVGLGVSLAICLRQELVLAEPAPHPSSTACPSTSDTEGSADNIATQ
SAAKTSSARSASAKSNNFLRKLFSRVRRKHRKGGNDGGVAEEKGYREACV
DQGMLVGRRSSGSTASDE
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mRNA from alignment at L-elsbetiae_contig1334:16790..17998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1334.2583.1 ID=mRNA_L-elsbetiae_contig1334.2583.1|Name=mRNA_L-elsbetiae_contig1334.2583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1209bp|location=Sequence derived from alignment at L-elsbetiae_contig1334:16790..17998+ (Laminarionema elsbetiae ELsaHSoW15)
GGACTTATGAGACTGCATGCTGTGGGCCTGGGAGTTTCATTGGTGAGTCA
TGCCGGAGTTTGCTGAATCTCCGAACATGTTGGCGCACAGAGCCCCGACT
GAAGTTTCTTGCGCCCTTTCGCGGAGATAGTTCGCCCGCGAACTGGGTGC
TTTTTTTACGGGGGTCACAGAAGTACTGTTGTAAGGGCGGAGTTGTTTTT
CACCCCACACAGCTCGGACTTGCGTGATAGCTGTGGCCCATACGATCATA
GCGGATCCGGATTTGTGTCGATCCGATATCTGTGGGCCGAGTTGTGCCCA
GTCTCGAACATAAGCCTTGCGACACTGCCCTCATGTTCTGCTGTGAGCCC
GATAGTCGATACGGCATATCTCGGCAACCACTAGGTGCATCGATCTCAAC
GATAGTTCGCCTGGTAGCTGTGCCTCGTGCGGTCACAACGCATCTACGTT
TGCGCCGATCCAAGCTATGTGCGCTCAGAAATGCCCGGTGTCGTAAATAA
GAAGGTACGACACCGGTGTCGTGAATAGCAGTGCCGTTCTTTTTATCGAC
AGGACAGGAGGCGGTCCCACGGTGCTGCTGTTATTCTTCCATGCACACGG
TTGCTCTGCATGTATGCCGCAATTCGACCATACGGTAACTCTGCATCGCA
ACAGGTGATGCTGTGGCATCGGCTAGGGGATAAGAGTGGAACAGCATGTA
CCCGGTCATGCTTGGTTTTAAAACAGGAAGCGTGCCAGAGACGGTTGTAT
GGTCGATTGAGAACCGTCTGAACCGCTGTACGTCAGGAGACGTACCAATA
CCACACTGCCGTGCGTTGAGCTTTTTTCTTCCCGCACGGCCGCACCACCT
ATTTACGGACGTAACAACTGCCGCAACATGTCCACGCACAGGCGATCTGC
CTGAGGCAAGAGCTCGTGCTAGCCGAACCGGCTCCCCACCCTTCATCTAC
CGCTTGTCCCTCGACATCGGACACCGAGGGCTCCGCCGATAATATCGCAA
CCCAATCTGCGGCGAAAACCTCGAGCGCCCGGTCCGCCTCCGCCAAGAGC
AACAATTTTCTCCGGAAATTGTTCTCCCGGGTGCGGAGGAAGCACCGCAA
GGGCGGCAACGACGGGGGCGTTGCTGAGGAGAAGGGTTATCGAGAAGCAT
GCGTGGACCAAGGCATGCTGGTCGGCCGCCGCAGCAGCGGTAGCACAGCA
TCAGATGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1334:16790..17998+

>mRNA_L-elsbetiae_contig1334.2583.1 ID=mRNA_L-elsbetiae_contig1334.2583.1|Name=mRNA_L-elsbetiae_contig1334.2583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1334:16790..17998+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGACTGCATGCTGTGGGCCTGGGAGTTTCATTGATGAGACTGCATGC
TGTGGGCCTGGGAGTTTCATTGGCGATCTGCCTGAGGCAAGAGCTCGTGC
TAGCCGAACCGGCTCCCCACCCTTCATCTACCGCTTGTCCCTCGACATCG
GACACCGAGGGCTCCGCCGATAATATCGCAACCCAATCTGCGGCGAAAAC
CTCGAGCGCCCGGTCCGCCTCCGCCAAGAGCAACAATTTTCTCCGGAAAT
TGTTCTCCCGGGTGCGGAGGAAGCACCGCAAGGGCGGCAACGACGGGGGC
GTTGCTGAGGAGAAGGGTTATCGAGAAGCATGCGTGGACCAAGGCATGCT
GGTCGGCCGCCGCAGCAGCGGTAGCACAGCATCAGATGAGGCGATCTGCC
TGAGGCAAGAGCTCGTGCTAGCCGAACCGGCTCCCCACCCTTCATCTACC
GCTTGTCCCTCGACATCGGACACCGAGGGCTCCGCCGATAATATCGCAAC
CCAATCTGCGGCGAAAACCTCGAGCGCCCGGTCCGCCTCCGCCAAGAGCA
ACAATTTTCTCCGGAAATTGTTCTCCCGGGTGCGGAGGAAGCACCGCAAG
GGCGGCAACGACGGGGGCGTTGCTGAGGAGAAGGGTTATCGAGAAGCATG
CGTGGACCAAGGCATGCTGGTCGGCCGCCGCAGCAGCGGTAGCACAGCAT
CAGATGAG
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