mRNA_L-elsbetiae_contig13339.2581.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13339.2581.1
Unique NamemRNA_L-elsbetiae_contig13339.2581.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13339.2581.1 vs. uniprot
Match: A0A6H5JJU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU2_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 4.100e-46
Identity = 102/148 (68.92%), Postives = 112/148 (75.68%), Query Frame = 3 
Query:    6 MLADWILSAAPGFDGEEDGDQEFQALPSRMAPDFGTDALEALEAAVTFAPTPLAAVREARAWREVIAPTQQGSSGSNSVNXXXXXXXXXXXXXXXXXKQQKRQHRSVLQLPSLTHAGHLLGLIGCCPSGELEAAFPWLARELLVLLRQ 449
            MLADW+L+AAPGFD + DG+  FQALPSRM  DF  DALEALEAAVTFA +PLAAVREARAWREVIAPTQQ  +G NS NXXXXXX             +K+Q  SV +L  LTHA HLL L+GCCPS ELEAAFP LARELL LLRQ
Sbjct:    1 MLADWVLTAAPGFDSKGDGEYAFQALPSRMTEDFAVDALEALEAAVTFARSPLAAVREARAWREVIAPTQQ-QTGGNSSNXXXXXXRSRSGG-------EKQQQPSVPELSGLTHASHLLSLVGCCPSVELEAAFPSLARELLRLLRQ 140
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BLAST of mRNA_L-elsbetiae_contig13339.2581.1 vs. uniprot
Match: D8LP19_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP19_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.750e-25
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 3 
Query:    6 MLADWILSAAPGFDGEEDGDQEFQALPSRMAPDFGTDALEALEAAVTFAPTPLAAVREARAWREVIAPTQ 215
            MLADW+L+AAPGFD + DGD  FQALP RM  DF  DALEALEAAVTFA +PLAAVREARAWREVIAPTQ
Sbjct:    1 MLADWVLTAAPGFDSQGDGDNAFQALPPRMTEDFAVDALEALEAAVTFARSPLAAVREARAWREVIAPTQ 70
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13339.2581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJU2_9PHAE4.100e-4668.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP19_ECTSI3.750e-2580.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13339contigL-elsbetiae_contig13339:2999..4232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size554
Cds size549
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13339.2581.1prot_L-elsbetiae_contig13339.2581.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13339 2999..4227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.1040285-CDS-L-elsbetiae_contig13339:2998..33341622815508.1040285-CDS-L-elsbetiae_contig13339:2998..3334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13339 2999..3334 -
1691682932.453892-CDS-L-elsbetiae_contig13339:2998..33341691682932.453892-CDS-L-elsbetiae_contig13339:2998..3334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13339 2999..3334 -
1622815508.1153529-CDS-L-elsbetiae_contig13339:3843..39601622815508.1153529-CDS-L-elsbetiae_contig13339:3843..3960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13339 3844..3960 -
1691682932.46512-CDS-L-elsbetiae_contig13339:3843..39601691682932.46512-CDS-L-elsbetiae_contig13339:3843..3960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13339 3844..3960 -
1622815508.1268897-CDS-L-elsbetiae_contig13339:4131..42271622815508.1268897-CDS-L-elsbetiae_contig13339:4131..4227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13339 4132..4227 -
1691682932.4740477-CDS-L-elsbetiae_contig13339:4131..42271691682932.4740477-CDS-L-elsbetiae_contig13339:4131..4227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13339 4132..4227 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.139086-UTR-L-elsbetiae_contig13339:4227..42321622815508.139086-UTR-L-elsbetiae_contig13339:4227..4232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13339 4228..4232 -
1691682932.4833713-UTR-L-elsbetiae_contig13339:4227..42321691682932.4833713-UTR-L-elsbetiae_contig13339:4227..4232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13339 4228..4232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13339.2581.1

>prot_L-elsbetiae_contig13339.2581.1 ID=prot_L-elsbetiae_contig13339.2581.1|Name=mRNA_L-elsbetiae_contig13339.2581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MLADWILSAAPGFDGEEDGDQEFQALPSRMAPDFGTDALEALEAAVTFAP
TPLAAVREARAWREVIAPTQQGSSGSNSVNNNNTNINTRGGGRGGGEKQQ
KRQHRSVLQLPSLTHAGHLLGLIGCCPSGELEAAFPWLARELLVLLRQRQ
RSRGAGAGAGETRAAGGSADGGDDDDDGDGSGG
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mRNA from alignment at L-elsbetiae_contig13339:2999..4232-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13339.2581.1 ID=mRNA_L-elsbetiae_contig13339.2581.1|Name=mRNA_L-elsbetiae_contig13339.2581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1234bp|location=Sequence derived from alignment at L-elsbetiae_contig13339:2999..4232- (Laminarionema elsbetiae ELsaHSoW15)
CTGCCATGCTAGCTGACTGGATACTTTCCGCCGCTCCGGGCTTCGACGGC
GAAGAAGATGGGGATCAGGAGTTTCAGGCTCTACCTTCCCGCATGGCACC
GGTAAGCGCCACGCCTGCAACGCTGCGGGGCAACCAGGCGGGACTGTCAT
TTTCCATTGGATGGTACACCTTACACTACCAGGCTCTCCCACCTAGCGCT
GTGGGAGCTCTGCTGTCGCCTTATGGCCATCACTGACAACTGTAATCGGT
CGCTTTGGTGCGTCTCTCGTAGGACTTTGGCACGGACGCACTGGAGGCTC
TGGAGGCCGCGGTGACCTTCGCGCCGACCCCGCTTGCGGCTGTGAGAGAG
GCCAGAGCGTGGCGAGAGGTGATCGCGCCCACCCAGCAGGTACGGAGAAG
CGTGATGATTGTGATTGTCGCGGTAGGCAGATGGGAACGAAGAAGAGCCC
GCTGTAGCTATTTAGGAACTGTAACAGTCGTAGCTTATTTGCTTCCGGAT
AAATCATTTTCGTTGTGTGCATCGGGTATTGATTGACCTTGTCACGAACC
TCTTGGGCCATCTCCTTTTCAGATCAAGCTGCGCTTGTTCCAGAGCTCCT
CCACCACTCTGTACCCACAACGTTTTTTCTTGGGCTGAATGCATCCATCG
CTACTTCTTGAAGGACAAGGCTGATGTAGGTAATACGCGGCAGCGACCCC
ACGCAGTCGCAAGCACGGACGTTTAACAGTCTCTTCGGCGTGTCTATATC
TAGTCTGCATACATATTTACGATGTAAGTTTGCCCCCAACCCAGACCCAG
AAATGTGCCTGGTGGTTTTGCCTTGGACAACAGGGCAACACACCACCGCC
TGAGGCCTGAATTCCGGAACATTTACATCCGACAACTTGTACCCACAGGG
CAGTAGTGGAAGCAACAGCGTCAACAATAACAACACCAACATCAATACCC
GCGGCGGGGGTAGGGGCGGTGGCGAGAAGCAGCAGAAACGACAGCACCGC
TCGGTGCTGCAGCTGCCGAGCCTGACGCACGCAGGCCACCTCTTGGGCCT
GATCGGCTGCTGCCCGTCTGGCGAGCTCGAGGCCGCGTTTCCGTGGCTGG
CTCGCGAGCTGCTGGTTCTCCTGCGACAGCGCCAACGATCGCGCGGCGCC
GGCGCCGGCGCCGGCGAGACGAGAGCGGCGGGCGGTAGCGCTGACGGCGG
TGACGACGACGACGACGGCGACGGGAGTGGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13339:2999..4232-

>mRNA_L-elsbetiae_contig13339.2581.1 ID=mRNA_L-elsbetiae_contig13339.2581.1|Name=mRNA_L-elsbetiae_contig13339.2581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig13339:2999..4232- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTAGCTGACTGGATACTTTCCGCCGCTCCGGGCTTCGACGGCGAAGA
AGATGGGGATCAGGAGTTTCAGGCTCTACCTTCCCGCATGGCACCGATGC
TAGCTGACTGGATACTTTCCGCCGCTCCGGGCTTCGACGGCGAAGAAGAT
GGGGATCAGGAGTTTCAGGCTCTACCTTCCCGCATGGCACCGGACTTTGG
CACGGACGCACTGGAGGCTCTGGAGGCCGCGGTGACCTTCGCGCCGACCC
CGCTTGCGGCTGTGAGAGAGGCCAGAGCGTGGCGAGAGGTGATCGCGCCC
ACCCAGCAGGACTTTGGCACGGACGCACTGGAGGCTCTGGAGGCCGCGGT
GACCTTCGCGCCGACCCCGCTTGCGGCTGTGAGAGAGGCCAGAGCGTGGC
GAGAGGTGATCGCGCCCACCCAGCAGGGCAGTAGTGGAAGCAACAGCGTC
AACAATAACAACACCAACATCAATACCCGCGGCGGGGGTAGGGGCGGTGG
CGAGAAGCAGCAGAAACGACAGCACCGCTCGGTGCTGCAGCTGCCGAGCC
TGACGCACGCAGGCCACCTCTTGGGCCTGATCGGCTGCTGCCCGTCTGGC
GAGCTCGAGGCCGCGTTTCCGTGGCTGGCTCGCGAGCTGCTGGTTCTCCT
GCGACAGCGCCAACGATCGCGCGGCGCCGGCGCCGGCGCCGGCGAGACGA
GAGCGGCGGGCGGTAGCGCTGACGGCGGTGACGACGACGACGACGGCGAC
GGGAGTGGTGGCGGCAGTAGTGGAAGCAACAGCGTCAACAATAACAACAC
CAACATCAATACCCGCGGCGGGGGTAGGGGCGGTGGCGAGAAGCAGCAGA
AACGACAGCACCGCTCGGTGCTGCAGCTGCCGAGCCTGACGCACGCAGGC
CACCTCTTGGGCCTGATCGGCTGCTGCCCGTCTGGCGAGCTCGAGGCCGC
GTTTCCGTGGCTGGCTCGCGAGCTGCTGGTTCTCCTGCGACAGCGCCAAC
GATCGCGCGGCGCCGGCGCCGGCGCCGGCGAGACGAGAGCGGCGGGCGGT
AGCGCTGACGGCGGTGACGACGACGACGACGGCGACGGGAGTGGTGGC
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