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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Model size | 812 |
| Cds size | 519 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815508.024832-UTR-L-elsbetiae_contig13336:1518..1765 | 1622815508.024832-UTR-L-elsbetiae_contig13336:1518..1765 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13336 1519..1765 - |
| 1691682932.4030387-UTR-L-elsbetiae_contig13336:1518..1765 | 1691682932.4030387-UTR-L-elsbetiae_contig13336:1518..1765 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13336 1519..1765 - |
| 1622815508.0721927-UTR-L-elsbetiae_contig13336:3941..3987 | 1622815508.0721927-UTR-L-elsbetiae_contig13336:3941..3987 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13336 3942..3987 - |
| 1691682932.4428022-UTR-L-elsbetiae_contig13336:3941..3987 | 1691682932.4428022-UTR-L-elsbetiae_contig13336:3941..3987 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13336 3942..3987 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815508.0358164-CDS-L-elsbetiae_contig13336:1765..1976 | 1622815508.0358164-CDS-L-elsbetiae_contig13336:1765..1976 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13336 1766..1976 - |
| 1691682932.4138014-CDS-L-elsbetiae_contig13336:1765..1976 | 1691682932.4138014-CDS-L-elsbetiae_contig13336:1765..1976 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13336 1766..1976 - |
| 1622815508.0475307-CDS-L-elsbetiae_contig13336:2656..2748 | 1622815508.0475307-CDS-L-elsbetiae_contig13336:2656..2748 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13336 2657..2748 - |
| 1691682932.4219835-CDS-L-elsbetiae_contig13336:2656..2748 | 1691682932.4219835-CDS-L-elsbetiae_contig13336:2656..2748 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13336 2657..2748 - |
| 1622815508.0601182-CDS-L-elsbetiae_contig13336:3725..3941 | 1622815508.0601182-CDS-L-elsbetiae_contig13336:3725..3941 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13336 3726..3941 - |
| 1691682932.431016-CDS-L-elsbetiae_contig13336:3725..3941 | 1691682932.431016-CDS-L-elsbetiae_contig13336:3725..3941 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13336 3726..3941 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13336.2580.1 >prot_L-elsbetiae_contig13336.2580.1 ID=prot_L-elsbetiae_contig13336.2580.1|Name=mRNA_L-elsbetiae_contig13336.2580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MAPNARKAPAAKNRATLPSLLTLLVLLAGGVSNHHRLLQGAGAQAEVDSI
CPDQEKLCLESDVCNKCVLSFEADEPCTETNFELTDTCSLFGTAYCCAAE
AAGLEECLNDQTTQEYLECTMEVQGCLVVDMPCFATVDELSAAASPRGAS
CAVGTVAAAAAAAALAVYSAAV* back to topmRNA from alignment at L-elsbetiae_contig13336:1519..3987- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig13336.2580.1 ID=mRNA_L-elsbetiae_contig13336.2580.1|Name=mRNA_L-elsbetiae_contig13336.2580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2469bp|location=Sequence derived from alignment at L-elsbetiae_contig13336:1519..3987- (Laminarionema elsbetiae ELsaHSoW15)
AGGTTATTCTCCTACCCTCCCCGGCGACGTACATCTCGTCGAAAGCATGG
CCCCCAACGCTAGGAAGGCACCGGCTGCGAAAAACCGGGCAACACTCCCG
TCCCTCCTCACACTCCTGGTTCTCTTGGCCGGGGGGGTATCGAACCACCA
CCGCCTGCTGCAGGGAGCTGGGGCGCAAGCAGAGGTCGACTCGATCTGCC
CTGACCAGGAGAAGTTGTGCCTGGAGAGCGATGTATGCAACAAGTGTGTG
CTGAGTTTCGAGGTATGTTAGTTTCTTTAAAAGAGTTATTTATTTATTTG
GATATTTGCCATGTTTTTTTTTTCTCCGACGTTGGGCTGTGGATGCCCCC
GTGCTCACCGATGCCGATGCGGGGAGTCTTTTTCTGAAGCCAACCATGTG
CGTAAGTTCATACATACGTAGAAGCACTCATGTGCATGAGGTGGCGGCAA
ACCCAACTCCGGACTGAAGGCAAGCTTCTTGGCTACACATGTCGAGATCG
GCTGTGCGTACAAGTGTCCGCCCCGGTTGCCTCGCAGGCCCCACACCCCC
TCCTACAACCGACATGGCTGGTTGGACCGCTTGTGGTGTAGACTGTCAAG
CATTGGTGTCGTTGTTGTTGTTATTGTTGTTGTGTCTTCACACTCAAAAC
CGTGCCGATCTCTCCACCCAGTTCCTCTGAGCCCCTCGCTCCACTCTGCA
CGCTATGCGAGGTAAAAGACAGAGCTGAACAAGCCAACATCACCAACCGC
GGGGGCAAACACCCCCTGGTTATATCTTGGCGCCCTAACAATGCCAGGGT
GTTCCGCTGTTGCGAACAGAATGGGAAAACCAAATCCCAACAGAAGTTTG
TCGATGCTACTTACTTAACACACACACACATGTGATGTCTGTATTTCTTC
GTCTGACTTCCCCGTAATATCCCCCTGAGAACACCCCGGGGGGTAAACAT
TTTTCAAGGCCGATTTGTTCCACAACCCGAGAGGGTACGATTGACCGAAG
TGTTTGAAGTTTGGAAAGACCTCGACGAGATCCTTCCAATGGCGCACCAT
CGCTCGACAACGGCAACCCATCCATTGCGGAGAAAATCGGCTTCGAAAAA
TGTTTACACCTCGGGGCGTTCTCAAGAGATACATACATACCACGGCGGTG
GTAAGTCACTATTTATTTCCCAATATCAATGTCTGCATTTCGTCTCTCTT
GCCTCCCTACACTCTCTTGCTTGCCCCTATGTATCCCAGGCGGATGAACC
TTGCACGGAAACCAACTTCGAATTGACGGACACGTGCAGTCTTTTCGGGA
CGGCGTACTGCTGCGCGGCGGAGGCCGCTGGGTGAGAGATTCACGGAGTC
CCTAAGAAAAAGAGACCAGTGGGGTGGTGGCATGATGGTTCTAGATTATT
AGGGGGCGCGGTAATGCGGGTATCCCCCACAGTATCCCCCCTCTACCAAA
GAGCACGAGCAAGTTGCTGGAGTGTGTGTGTTTCTCGTGCATTGTAAAAT
GTGTCAAAAAATACTTCTACCCGCCTGAAAACTTGTTGGCCGAACTCGCA
AATCTTTAAATCTTTGCAGGGGAGATATTACACTCTTCTGATATTTTAGG
TTGTTTTTCTGCTCGATTCGTGAAACATTACGTCACTGTTGTATGGAATA
CCGTTTGAACCCTATATCGAGTCCTTGCTCTAGTGTTGGGTAGGTTCCAT
CTTTGACTCAATTGTTAATTTAAAAAACAGACTCTGTTGCTGTTGCGTCC
AAAGCGCACGCACGCTATCTCTGTTTTGTTTCTTTCAGCGTTGCCCCGAC
AGCGGTACATCAGACATCGTTTCCATTTGCACGCTGCTGTGAGGCCGTCT
CGTGATCTTGGGTTTAGGACTCGACTCTTTTCCCGGAGGCAAGATTGCAG
GGACTCCGAGAATGGTAAAAGCGGAAGAGTAATCACAACCAAAACAATAA
TGGCAGGCGCCTAACACCGGTGTTGCTGTGCTATGTAAATACCTGTGATT
TTCCTCCGCAGACTGGAGGAATGTTTGAACGACCAAACCACGCAAGAGTA
CCTGGAGTGCACGATGGAGGTACAGGGCTGCTTGGTTGTGGACATGCCTT
GCTTCGCGACCGTTGATGAGCTCTCTGCCGCTGCCTCGCCGAGGGGCGCG
TCGTGTGCCGTGGGAACCGTGGCGGCCGCCGCCGCCGCAGCTGCGCTCGC
GGTTTATTCCGCCGCTGTTTAACAGCAACGGGGGCAGCTTTTTGGGTCTT
TGAGCCCATTGAAGCGCTCTTGCGATGTTTCTCGGGGTGTGATAGGTGTA
ATAGTATTAGCATGGCCTTGCGGTTGTAGGGAAGAAGGGGTGATAGCATT
GTCGCATGCACGCCCGACTAGTGAACTTGCTTTGTTTTCACCATAATTTC
ATGCAGGACCTGTCATTTTTGTTTTTATTTTTGTATCAGGAGTGAATTTG
CTGAGACGGCATAGCACGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig13336:1519..3987- >mRNA_L-elsbetiae_contig13336.2580.1 ID=mRNA_L-elsbetiae_contig13336.2580.1|Name=mRNA_L-elsbetiae_contig13336.2580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig13336:1519..3987- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCCCAACGCTAGGAAGGCACCGGCTGCGAAAAACCGGGCAACACT
CCCGTCCCTCCTCACACTCCTGGTTCTCTTGGCCGGGGGGGTATCGAACC
ACCACCGCCTGCTGCAGGGAGCTGGGGCGCAAGCAGAGGTCGACTCGATC
TGCCCTGACCAGGAGAAGTTGTGCCTGGAGAGCGATGTATGCAACAAGTG
TGTGCTGAGTTTCGAGATGGCCCCCAACGCTAGGAAGGCACCGGCTGCGA
AAAACCGGGCAACACTCCCGTCCCTCCTCACACTCCTGGTTCTCTTGGCC
GGGGGGGTATCGAACCACCACCGCCTGCTGCAGGGAGCTGGGGCGCAAGC
AGAGGTCGACTCGATCTGCCCTGACCAGGAGAAGTTGTGCCTGGAGAGCG
ATGTATGCAACAAGTGTGTGCTGAGTTTCGAGGCGGATGAACCTTGCACG
GAAACCAACTTCGAATTGACGGACACGTGCAGTCTTTTCGGGACGGCGTA
CTGCTGCGCGGCGGAGGCCGCTGGGCGGATGAACCTTGCACGGAAACCAA
CTTCGAATTGACGGACACGTGCAGTCTTTTCGGGACGGCGTACTGCTGCG
CGGCGGAGGCCGCTGGACTGGAGGAATGTTTGAACGACCAAACCACGCAA
GAGTACCTGGAGTGCACGATGGAGGTACAGGGCTGCTTGGTTGTGGACAT
GCCTTGCTTCGCGACCGTTGATGAGCTCTCTGCCGCTGCCTCGCCGAGGG
GCGCGTCGTGTGCCGTGGGAACCGTGGCGGCCGCCGCCGCCGCAGCTGCG
CTCGCGGTTTATTCCGCCGCTGTTTAAACTGGAGGAATGTTTGAACGACC
AAACCACGCAAGAGTACCTGGAGTGCACGATGGAGGTACAGGGCTGCTTG
GTTGTGGACATGCCTTGCTTCGCGACCGTTGATGAGCTCTCTGCCGCTGC
CTCGCCGAGGGGCGCGTCGTGTGCCGTGGGAACCGTGGCGGCCGCCGCCG
CCGCAGCTGCGCTCGCGGTTTATTCCGCCGCTGTTTAA back to top
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