mRNA_L-elsbetiae_contig13330.2579.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13330.2579.1
Unique NamemRNA_L-elsbetiae_contig13330.2579.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13330.2579.1 vs. uniprot
Match: A0A6H5JBW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.490e-6
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 2 
Query:  146 LAKNIITSLSKLIFFVFQPCLLFVNVAATLGT 241
            L ++ ITSLSKLIFFVFQPCLLFVNVA+TLGT
Sbjct:   19 LDQSAITSLSKLIFFVFQPCLLFVNVASTLGT 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13330.2579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBW8_9PHAE1.490e-684.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13330contigL-elsbetiae_contig13330:2083..4353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.9751263-CDS-L-elsbetiae_contig13330:2082..22361622815507.9751263-CDS-L-elsbetiae_contig13330:2082..2236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13330 2083..2236 +
1691682932.3772476-CDS-L-elsbetiae_contig13330:2082..22361691682932.3772476-CDS-L-elsbetiae_contig13330:2082..2236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13330 2083..2236 +
1622815507.9931545-CDS-L-elsbetiae_contig13330:4264..43531622815507.9931545-CDS-L-elsbetiae_contig13330:4264..4353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13330 4265..4353 +
1691682932.3886747-CDS-L-elsbetiae_contig13330:4264..43531691682932.3886747-CDS-L-elsbetiae_contig13330:4264..4353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13330 4265..4353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13330.2579.1prot_L-elsbetiae_contig13330.2579.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13330 2083..4353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13330.2579.1

>prot_L-elsbetiae_contig13330.2579.1 ID=prot_L-elsbetiae_contig13330.2579.1|Name=mRNA_L-elsbetiae_contig13330.2579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
LWPRPPRAAAGTPERRSSCHRGRERGRGRKPYRLILSVPVPIPPPLPQAR
EEHNHISVQAHILRVPALPALRERGRHPRNP
back to top

mRNA from alignment at L-elsbetiae_contig13330:2083..4353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13330.2579.1 ID=mRNA_L-elsbetiae_contig13330.2579.1|Name=mRNA_L-elsbetiae_contig13330.2579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2271bp|location=Sequence derived from alignment at L-elsbetiae_contig13330:2083..4353+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTGGCCGCGTCCTCCTCGTGCTGCGGCGGGAACACCGGAGAGGCGTTC
GTCGTGCCACCGGGGGCGGGAGCGGGGACGGGGACGAAAGCCGTACCGCC
TTATCTTGTCGGTGCCGGTGCCGATACCGCCTCCGCTTCCGCAGGCTCGC
GAAGGTGAGGTGGGAGGGACTGCCTTGGCAAATAATTCCTGTTTATATAG
GAGATAATAGACAGGGGGTTCCGTAACCCCCCCGAAACCGACCCCCCATT
AGCCGCTTCCATGCTCTACAATATCCCATATGATTTCTTCCAGTAAAACC
TTCGAAGGTAAAGTTGCAACGAGGAGGTTTTTGTTCTCGATGTCGTGAAA
TGCAGGCGAGAGGGGGTGTGTAGCAAGACAGGTATGTGTGTGTGTTGGTG
CTTGTAAATACATCATGAGAAGAAATGCCCTCCCCCGGTGATGTCGGCGG
TAGTGGCGGTGGCGGTGGTAGTGGTCGATGTGGTGGGAAGAGGAAAACCG
CCCGAAAAACAATAGAGCAGTGCACGTGTTCCAAGAGAGAAAGAGGCAGC
AAAAGAGGGAGGCAGACAGACAGATAGACAGATAGACAGACAAACGGAGG
GTGAGTTATTCCTTGCCGAAGACCTCCGTTTAGGGTGAGTCTTAACATCA
CGAAAACAAATCGAAATCGAAATCGAATTCGAAACAATTTTCGATTCGCG
GTTGTGTCCAAGCAACCGCAGCATGCTAATCGAAATCGAAATCCAAACGC
GGGGGGAAAAGGCCCGAAATGGCAACGTTGCAATACTTCAAACGATGACC
GTGAGAACTATGGGGCATCCGAGCCATCAAAGTACAGCTCTAGAAAAACC
GCCCAGTTGAGGCCTACACGTAGATGCCAGCCTCTCTGCGAAGCGCGACG
TATTCAGCGAGGAATGCGTGTCGGAGTGCTGCGGTGTGGCAGCTCAGCGG
TAAAAAGTAGCTGCCGTTGAACACGCAAGTTTTCACGCCGATGGCTGTAG
CCCGTTCAATTCGCGGCGATTGCTGATGTTTCAAGGTATTCTGTGCTCTA
CAGGATAGCTGTCAGCTTCATCCGAAGGTATCGCATGTGTCACGAAGCCG
CCTATATCTAGGTGGCAGGGTGAAGGTCGGAGTGAAGGCATCGTCCACAT
TTCAGAAGCGTTTTGGGATCGCCAGCGGGCCACCGTCAAGTTACCCCTCG
TCCTTTTCACGCCGCATTTAGAGGCTATTCGTCTGTTCTCTTGATTTTTG
GGTAGTCGACAGAGAGAATGCGGCGTAAAAGGCCACAATGAAACAATTCG
GTGGCCGCAGGTGCCGCGTTGACCAACCCTGTAATTTCGCCGCTTCGATT
TCGATTTCGATTTCGATTTCGATTTCGATTTCGTTTTTTTTTCGTGATGT
TAAGACGCACCCTGAGACGTTTGGATGAGATGCTATCGATCTGTGTGCCT
CTCGAGGTCTGTGACGTGCCTGCTGGAAGCCGATGGATTTCGTGTTATGT
AGCCGTGGTCTTTTTTAGGGCTCAAAAATAAATCAGGAAGTCGAAGACAT
GACGATACTTCCCTCCCCACACTCGAGGCGGAACTTTATGGAACTATACA
CTTGAGTACAACACGGTACAGCAGTCATTCCATGCAATACAGCAGTGATG
TACATCGGTCCGACCGAGTGGACCGAGTAGTAGAAAAACGCCTTAAAAAA
ACACTCGTCCGGGTTGGACGTAGGCATACCGCTGACGTTCAGTTGGCCAC
CCTTTAAAAATACCGATGTACCTCTCCTTACACTAGAAGCAAAACACGAG
GGGCAGAGTCATCCCGCATACTATGTAGGATTTCGGACTTTGTGGGGGGT
TATTCAGGGCTGAGTTTTTCTTTTTCTTTTTTTACCTTCACATCTATTGC
CAGCACTATGTACAGAGCAAACCTAACTTTTAAAGACCTCTTATGTTTTT
GCGTGGTCCTGGGAGTAGTTGTGTCGTCCTCCTGTGTCCTTGTGTCCTCT
GCGTTTTGCAGCAGCAAGCTGTGGGGCTTTTGATGTTGGCGCTCTTTGCC
GGGCATCGCAAGCTGTTGCTACTTGTATTCTCCGTATCCTGCGCCATGCA
TGACCTCTCTTAATACCCCTCATTACTATCCCTCTCTTTCTCTCTGTCTT
TCATACGTCTTCTCCCCACCCCTCTCCCCCAGAACATAATCACATCTCTG
TCCAAGCTCATATTCTTCGTGTTCCAGCCTTGCCTGCTCTTCGTGAACGT
GGCCGCCACCCTCGGAACCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13330:2083..4353+

>mRNA_L-elsbetiae_contig13330.2579.1 ID=mRNA_L-elsbetiae_contig13330.2579.1|Name=mRNA_L-elsbetiae_contig13330.2579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig13330:2083..4353+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTGGCCGCGTCCTCCTCGTGCTGCGGCGGGAACACCGGAGAGGCGTTC
GTCGTGCCACCGGGGGCGGGAGCGGGGACGGGGACGAAAGCCGTACCGCC
TTATCTTGTCGGTGCCGGTGCCGATACCGCCTCCGCTTCCGCAGGCTCGC
GAAGTTGTGGCCGCGTCCTCCTCGTGCTGCGGCGGGAACACCGGAGAGGC
GTTCGTCGTGCCACCGGGGGCGGGAGCGGGGACGGGGACGAAAGCCGTAC
CGCCTTATCTTGTCGGTGCCGGTGCCGATACCGCCTCCGCTTCCGCAGGC
TCGCGAAGAACATAATCACATCTCTGTCCAAGCTCATATTCTTCGTGTTC
CAGCCTTGCCTGCTCTTCGTGAACGTGGCCGCCACCCTCGGAACCCCAAC
ATAATCACATCTCTGTCCAAGCTCATATTCTTCGTGTTCCAGCCTTGCCT
GCTCTTCGTGAACGTGGCCGCCACCCTCGGAACCCC
back to top