mRNA_L-elsbetiae_contig1333.2578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1333.2578.1
Unique NamemRNA_L-elsbetiae_contig1333.2578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: D7FJP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP5_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 2.480e-85
Identity = 164/309 (53.07%), Postives = 188/309 (60.84%), Query Frame = 3 
Query:  138 ATLRKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCDFCADMTDSIMPKLPGYSKAALVGRQTVAKFREDAPPEAVRLYLVNVRLPHVGTDLLITVNVPHPDEDAAASSPASAECFLPTTAXXXXXXXXXXGEASPGXXXXXXXXXXXXXXXXXXXGAGTEISREXXXXXXXXXGEEERTEKVLSERARVVDAPEGFAREEXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDLDAGVAALRPLLHSFAILEWSLFG 1064
            ATLRKLFGGAMECLLPAAY+DVSDLRQVPDHQE F S+EDG+SIV+EVLSFEADI+M  ++     + G+SARHFFDDLAAANGAT+S CDFC D++DSIMPKL  Y+K+AL GRQTVAKFR+DAPP+AVRLYLVNVRLP+VGTDLLITVNVP PD+D A  + A AECF    +           E S G                     GT    +           E   + V       VD PEG    E                           G D+D GVAALR LL SFAIL+WSLFG
Sbjct:    9 ATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKEDGISIVIEVLSFEADINMDEQAR----KDGASARHFFDDLAAANGATSSACDFCGDLSDSIMPKLASYTKSALAGRQTVAKFRQDAPPDAVRLYLVNVRLPNVGTDLLITVNVPCPDQDTAVRTMAGAECFCSGPSRHTAGANE---EISTGAPLIDANKTSETASGAHAAADGTAAGTDKPFKSAADFSPEATVDGVGG-----VDKPEGSGEIEAGVGEGKGEKHSSPGG-----------GDDVDLGVAALRTLLQSFAILDWSLFG 294
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: A0A2R5GLU9_9STRA (Ran guanine nucleotide release factor n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLU9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.370e-21
Identity = 69/171 (40.35%), Postives = 100/171 (58.48%), Query Frame = 3 
Query:  147 RKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCDFC-ADMTDSIMPKL-----PGYSKAALVGRQTVAKFREDAPPEAVRLYLVNVRLPHVGTDLLITVNVPHPDEDAAASSPASAE 641
            R+LFGGA+   LPAA+ DVS +R+VPDHQE F  +    SI+VEVL   A  S  +E+ G         ++FF+DLA ANG+ A+  ++    +  + +P L     P  +   ++G Q VAKFRE A    +R++L N+RLP   TD+LI++N P     A +SS AS +
Sbjct:   32 RELFGGAITASLPAAFADVSTVREVPDHQEVFADQNTDRSIIVEVLELTA--SESNETAG---------KYFFEDLAGANGSEATVIEYSEVGVPATSVPCLDKVADPAAASNVVIGTQVVAKFRESAK-NTIRVFLCNIRLPKYTTDILISLNAPV-KVSAESSSAASLQ 189
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: K3WBQ5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBQ5_GLOUD)

HSP 1 Score: 102 bits (253), Expect = 2.490e-21
Identity = 67/171 (39.18%), Postives = 100/171 (58.48%), Query Frame = 3 
Query:  147 RKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCDFCADMTDSIMPKLPGYSKAA------LVGRQTVAKFRED-APPEAVRLYLVNVRLPHVGTDLLITVNVPHPDEDAAASSPASA 638
            R LFGGA+ C +P  + DVS  RQVPD+QE F + +    ++VE+L +E+D+               SAR FF+++AA+NG +    D  + +   ++    G + AA      LVG Q VAKF+ED +    VR+YL N+RLP V TD++I+V+VP   + +AASS A +
Sbjct:    3 RALFGGALSCAIPEGFADVSSFRQVPDNQEVFANAQTDQCVIVELLQYESDVCDDE-----------SARFFFNEIAASNGCSP---DDVSILHSELLAANDGPAIAAAHTNSILVGDQRVAKFKEDESAKNVVRVYLGNIRLPSVTTDVVISVSVPL--QISAASSSAGS 157
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: M4B727_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B727_HYAAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.280e-20
Identity = 62/169 (36.69%), Postives = 91/169 (53.85%), Query Frame = 3 
Query:  144 LRKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCDFCADMTDSIMPKL-----PGYSKAALVGRQTVAKFRED-APPEAVRLYLVNVRLPHVGTDLLITVNVPHPDEDAAASSPA 632
            LR LFGGA+ C +P  + DVS  RQVPD+QE F +     S+++E+L +E ++S              S R+FF++LA +NG            TD +           ++   +VG Q VAKF+ED A    VR+YL NVRLP V TD+++TV+ P     +++S  A
Sbjct:    2 LRPLFGGALSCDIPEGFADVSSFRQVPDNQEVFANAATDQSVIIELLQYEENVSDAE-----------SGRYFFNELAQSNGCGPDEVTVLLRETDEMQHMSHVSIDAPHTTQLIVGDQHVAKFKEDDAAKNVVRVYLGNVRLPGVTTDVILTVSTPMQISSSSSSRDA 159
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: A0A7S3MHE7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHE7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.520e-20
Identity = 70/173 (40.46%), Postives = 102/173 (58.96%), Query Frame = 3 
Query:  138 ATLRKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCDFCADMT--DSIMPKL-PGYSKAALVGRQTVAKFREDAPPEAVRLYLVNV--RLPHVGTDLLITVNVPHPDEDAAASSPASAE 641
            A+ R LFGGA+E  L A Y+DVSD+RQVPDHQE F+ +++ VSI+VE+L +E D+    +S G       + RH+++DL   N A  +     A +T  +S +P L     K A+VG+QTV K+      +   +Y+V V  RL +VGT+L I++N+P     AAA  P   E
Sbjct:   15 ASKRDLFGGAIEANLGADYLDVSDVRQVPDHQEVFIHKDNEVSIIVELLQYENDLE---DSIG-------AVRHYYNDLVEVNEAAENKILSEAVLTAEESFLPNLGKDVVKMAIVGKQTVGKYSTRPGMQIDHIYVVFVLVRLVNVGTELFISMNIP-----AAALVPTKRE 172
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: A0A836B217_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B217_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 4.230e-19
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 3 
Query:  147 RKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCDFCADMTDSIMPKLPGYSKAALV-GRQTVAKFREDAPPEAVRLYLVNVRLPHVGTDLLITVNVP 596
            R+L+GGA+E  LPA  +DVSD+R VPDHQE +       +I+ E++  E D S+P      DG  G   RH F+D A  N A AS  D  A +    +P +P  S   LV GRQTV + ++ A      + L  +RLPHVG+DLLIT++ P
Sbjct:   13 RELWGGAVEAQLPARMLDVSDMRPVPDHQEVWADTRTDQAIIFEIV--EHDTSVP------DGEAG---RHMFEDAAVGNEAVASAIDSVASLGAQEVPGVPEASYRCLVRGRQTVRRGQQAAD---TCVLLAVLRLPHVGSDLLITLSTP 149
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: A0A662WTL8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTL8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.770e-19
Identity = 62/167 (37.13%), Postives = 92/167 (55.09%), Query Frame = 3 
Query:  144 LRKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATAS--TCDFCADMTDSIMPKLPG-YSKAALVGRQTVAKFRE-DAPPEAVRLYLVNVRLPHVGTDLLITVNVPHPDEDAAASSPA 632
            L  LFGGA+ C +P  + DVS  RQVPD+QE F +      ++VE+L FE+ +S  +           SA++FF+++A ANG      T      +     P + G +S   +VG Q VAKF+E D     VR+YL N+RLP V TD++++V+ P     A++S  A
Sbjct:   27 LHPLFGGALSCEIPEGFADVSSFRQVPDNQEVFANAATDQCVIVELLQFESSVSDAA-----------SAQYFFNEIAQANGCGPDEVTVLLSEQVDAKNAPVISGEHSTTVIVGDQRVAKFKEGDDAKNVVRVYLGNIRLPGVTTDVVLSVSAPMRINPASSSRDA 182
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: A0A8K1FKZ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKZ4_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 5.230e-19
Identity = 63/175 (36.00%), Postives = 99/175 (56.57%), Query Frame = 3 
Query:  150 KLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCDFCADMTDSIM------------PKLPG-YSKAALVGRQTVAKFRE-DAPPEAVRLYLVNVRLPHVGTDLLITVNVPHPDEDAAASSPA 632
            +LFGGA+ C++P  + DVS  RQVPD+QE F + +   +I++E+L +EA +S              S  +FF+++A +NG        CA    SI+            PK+ G ++ + +VG Q VAKF+E +A    VR+Y+  VRLP V TD++I+V+VP    +A++S  A
Sbjct:    5 ELFGGALSCVIPQGFADVSSFRQVPDNQEVFANAQTDQAIIIELLEYEATVSDAE-----------SGTYFFNEIATSNG--------CAPGDVSILHTEVLASGHANGPKVDGQHATSIVVGDQRVAKFKESEAAKNVVRVYIGIVRLPGVTTDVVISVSVPLQISEASSSRDA 160
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: A0A836CFP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFP4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.320e-19
Identity = 70/219 (31.96%), Postives = 106/219 (48.40%), Query Frame = 3 
Query:  147 RKLFGGAMECLLPAAYMDVS---------------------DLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCDFCADMTDSIMPKLPGYSKAALVGRQ---------------TVAKFREDAPPEA-----------VRLYLVNVRLPHVGTDLLITVNVPHPDEDAAASSPASAECFLPTTA 662
            R LFGGAM+C LP  + D+                      +LRQVPD+QE +V  ++  SIVVE+L  ++ +             GSSARH+F DLAAAN +  +  ++CAD+T  ++P LP   K AL+G Q               + +++R D                VR+++++V LP   TDLLIT+N P    D+  ++ A+     P+ A
Sbjct:   52 RPLFGGAMKCQLPPDWRDLRATAPVPPLQCAQCTAVLHCCCELRQVPDNQEVYVDADNN-SIVVELLELQSGLEP-----------GSSARHYFQDLAAANESQDTVVEWCADVTGMVIPSLPQAPKCALIGTQFLFSSANSQAVRKRLSASEYRTDTXXXXXXXXXXXXXXXVRVFMIHVTLPEAATDLLITLNQPLTFGDSTTAAAAADTALQPSEA 258
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BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Match: H3G8W9_PHYRM (Uncharacterized protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=H3G8W9_PHYRM)

HSP 1 Score: 94.4 bits (233), Expect = 1.230e-18
Identity = 64/168 (38.10%), Postives = 94/168 (55.95%), Query Frame = 3 
Query:  144 LRKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDGVSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGA----TASTCDFCADMTDSIMPKLPGYSKAALVGRQTVAKFRE-DAPPEAVRLYLVNVRLPHVGTDLLITVNVPHPDEDAAASSPA 632
            LR LFGGA+ C +P  + DVS  RQVPD+QE F +      ++VE+L +E  +S        D R   SAR+FF++LA +NG          +  AD  ++     P ++   +VG Q VAKF+E D     VR+YL NVRLP V TD++++++ P     A++S  A
Sbjct:    2 LRPLFGGALICEIPEGFADVSSFRQVPDNQEVFANAATDQCVIVELLQYEESVS--------DAR---SARYFFNELAQSNGCGPDEVTVLLEAAADARNAPAVDAP-HTTQLIVGDQRVAKFKEGDHAKNVVRVYLGNVRLPGVTTDVVLSMSAPMRINPASSSRDA 157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1333.2578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJP5_ECTSI2.480e-8553.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GLU9_9STRA1.370e-2140.35Ran guanine nucleotide release factor n=1 Tax=Hond... [more]
K3WBQ5_GLOUD2.490e-2139.18Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
M4B727_HYAAE4.280e-2036.69Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S3MHE7_9STRA6.520e-2040.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A836B217_9CHLO4.230e-1942.38Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A662WTL8_9STRA4.770e-1937.13Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A8K1FKZ4_PYTOL5.230e-1936.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836CFP4_9STRA5.320e-1931.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H3G8W9_PHYRM1.230e-1838.10Uncharacterized protein n=16 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1333contigL-elsbetiae_contig1333:21690..26065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.3
Seed ortholog evalue2.7e-73
Seed eggNOG ortholog2880.D7FJP5
Preferred nameRANGRF
KEGG koko:K17495
Hectar predicted targeting categoryother localisation
GOsGO:0001947,GO:0002009,GO:0002027,GO:0002028,GO:0003007,GO:0003008,GO:0003013,GO:0003015,GO:0003143,GO:0003254,GO:0003674,GO:0005085,GO:0005087,GO:0005088,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005791,GO:0005829,GO:0005886,GO:0005901,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006888,GO:0006913,GO:0006937,GO:0006942,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0008565,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0010467,GO:0010646,GO:0010959,GO:0010968,GO:0012505,GO:0014704,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016192,GO:0016247,GO:0016973,GO:0017016,GO:0017038,GO:0017080,GO:0019899,GO:0022898,GO:0023051,GO:0023052,GO:0030054,GO:0031110,GO:0031113,GO:0031267,GO:0031291,GO:0031503,GO:0031974,GO:0031981,GO:0032271,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032880,GO:0032886,GO:0032970,GO:0033036,GO:0033043,GO:0033365,GO:0034504,GO:0034613,GO:0034762,GO:0034765,GO:0035050,GO:0035239,GO:0035295,GO:0035556,GO:0042391,GO:0042592,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043269,GO:0044057,GO:0044087,GO:0044291,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048518,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051020,GO:0051028,GO:0051049,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051270,GO:0051493,GO:0051641,GO:0051649,GO:0051716,GO:0055117,GO:0060047,GO:0060341,GO:0060429,GO:0060562,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072359,GO:0072594,GO:0086004,GO:0090226,GO:0090257,GO:0098589,GO:0098590,GO:0098772,GO:0098805,GO:0098857,GO:0098900,GO:0098901,GO:0098902,GO:0098905,GO:0098909,GO:1900825,GO:1902305,GO:1902903,GO:1903076,GO:1903078,GO:1903115,GO:1903522,GO:1903779,GO:1903827,GO:1903829,GO:1904062,GO:1904375,GO:1904377,GO:1905475,GO:1905477,GO:2000008,GO:2000010,GO:2000649
EggNOG free text desc.regulation of microtubule nucleation by Ran protein signal transduction
EggNOG OGsKOG3329@1,KOG3329@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Ec32 ortholog descriptionMog1/PsbP, alpha/beta/alpha sandwich
Ec32 orthologEc-06_010710.1
Exons5
Model size1763
Cds size957
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.8625047-UTR-L-elsbetiae_contig1333:21689..223851622815507.8625047-UTR-L-elsbetiae_contig1333:21689..22385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 21690..22385 -
1691682932.300996-UTR-L-elsbetiae_contig1333:21689..223851691682932.300996-UTR-L-elsbetiae_contig1333:21689..22385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 21690..22385 -
1622815507.9232583-UTR-L-elsbetiae_contig1333:25556..256061622815507.9232583-UTR-L-elsbetiae_contig1333:25556..25606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 25557..25606 -
1691682932.3545475-UTR-L-elsbetiae_contig1333:25556..256061691682932.3545475-UTR-L-elsbetiae_contig1333:25556..25606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 25557..25606 -
1622815507.9354472-UTR-L-elsbetiae_contig1333:26005..260651622815507.9354472-UTR-L-elsbetiae_contig1333:26005..26065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 26006..26065 -
1691682932.3618827-UTR-L-elsbetiae_contig1333:26005..260651691682932.3618827-UTR-L-elsbetiae_contig1333:26005..26065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 26006..26065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.8746552-CDS-L-elsbetiae_contig1333:22385..229021622815507.8746552-CDS-L-elsbetiae_contig1333:22385..22902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 22386..22902 -
1691682932.3178816-CDS-L-elsbetiae_contig1333:22385..229021691682932.3178816-CDS-L-elsbetiae_contig1333:22385..22902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 22386..22902 -
1622815507.8852139-CDS-L-elsbetiae_contig1333:23768..238851622815507.8852139-CDS-L-elsbetiae_contig1333:23768..23885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 23769..23885 -
1691682932.32857-CDS-L-elsbetiae_contig1333:23768..238851691682932.32857-CDS-L-elsbetiae_contig1333:23768..23885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 23769..23885 -
1622815507.899164-CDS-L-elsbetiae_contig1333:24623..248511622815507.899164-CDS-L-elsbetiae_contig1333:24623..24851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 24624..24851 -
1691682932.339483-CDS-L-elsbetiae_contig1333:24623..248511691682932.339483-CDS-L-elsbetiae_contig1333:24623..24851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 24624..24851 -
1622815507.912304-CDS-L-elsbetiae_contig1333:25461..255561622815507.912304-CDS-L-elsbetiae_contig1333:25461..25556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 25462..25556 -
1691682932.3469841-CDS-L-elsbetiae_contig1333:25461..255561691682932.3469841-CDS-L-elsbetiae_contig1333:25461..25556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 25462..25556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1333.2578.1prot_L-elsbetiae_contig1333.2578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1333 22386..25556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1333.2578.1

>prot_L-elsbetiae_contig1333.2578.1 ID=prot_L-elsbetiae_contig1333.2578.1|Name=mRNA_L-elsbetiae_contig1333.2578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=319bp
MAAANNPSGATLRKLFGGAMECLLPAAYMDVSDLRQVPDHQEAFVSREDG
VSIVVEVLSFEADISMPSESDGGDGRGGSSARHFFDDLAAANGATASTCD
FCADMTDSIMPKLPGYSKAALVGRQTVAKFREDAPPEAVRLYLVNVRLPH
VGTDLLITVNVPHPDEDAAASSPASAECFLPTTAAAAAADTAASGEASPG
AAQAPTVAGGALASEGASSGAGTEISREEEEAAAERAGEEERTEKVLSER
ARVVDAPEGFAREEAAAAAAGTRAAAEGGDEDGRLIFSSAGGGDLDAGVA
ALRPLLHSFAILEWSLFG*
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mRNA from alignment at L-elsbetiae_contig1333:21690..26065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1333.2578.1 ID=mRNA_L-elsbetiae_contig1333.2578.1|Name=mRNA_L-elsbetiae_contig1333.2578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4376bp|location=Sequence derived from alignment at L-elsbetiae_contig1333:21690..26065- (Laminarionema elsbetiae ELsaHSoW15)
CTAGGCTTCACCGCTCTTTTCGCTCGTGGCAGCACACACTCGCTCTAGGC
CGTACTGAAGGTGGGCTGGGGGCTCCACCATATCATACACACGCAACTGC
TGTTCATCGATTATCGGCAAGCATGTACAAGAACACTAATAATCTCAACA
CAGTCTCCATGTTGTTGCTGATGCGGTGGAGATGGTGCAGAGTTCGAGAT
GGACACTGCTATCGCATTGCGAATTGCATGTTTTCCTTCTTTGTCTTGCA
GCTAATGTATACTGTACCTTTGCGACACGACTGTGAAGCAGTTTGCAACC
TAGTCGGCTGCCACATAGACCATGAGAATACCACCTGAAATCGACAATGT
ACAGCAGCCGGGTAGTCTGAGATGCCACCTGAACTCAACTCCATAGTCTA
CAGCTCTGTGCTTACCTCAATGGCTGTTCTGCTGTCTACGTGCGTGTCAA
CCCCGATAGCTGCAGTGCATACCTCATACCAAACGATCGATCGGGAACGA
GTAGCGGCAATGGCAGCGGCGAACAACCCTTCGGGTGCTACCCTTCGGAA
GCTATTCGGAGGCGCGATGGAGTGCTTGCTGCCGGCGGCGTACATGGACG
TGAGGTGAGCGGGCAAGTGGGTAGGAGTACATACCAACACGAGACCACCT
TCCCTGGCCGTACCCGCCCGCTCTTTCGGATCGGGCAAGGAATCACTCTG
TCTAACTACCTACCTGTACAGCACTGCTGCTGCAGCCTCTTCGCCAAAGC
GTCCTGCCAAATGTCTGTACCAAACGTAGAACGACGAGACTACCGTAATC
ATGCGAGTGATCGCACCCCTCTGGACCGGTTTTCAAAGCTCGATTACTCC
TTCACGAAGAGGGTGCCAACACCAAACGGCACGCCTTTATGACAGGTCTC
GACGTGATTGTGCCAATGCCACCCTTTTCGGTGCCGGCACCCCCCTTCGT
CAAGGCGCAATTGAGCCTTGAAAATCGGTACGGGGGGGTGCGATGACTCG
CATGATTACGGTAGATATACATATATCTATGTATGTAGTACAAGCAAGAC
TATTGTGGAGGTAGTTCTCTCTACACCACTGCTGTCACAGCCTCTTGGAA
AGCACATCTGCTAGATTCCCCGCGTGCAATGCTAATGCTGCTCAAGTTTC
TCTAACTCGCGTCCCGCCCACCCGTTTTTATGTACCCCTCCCTGTGCCCC
CTGCCTTCCAACAGTGATCTTCGACAAGTGCCCGACCATCAAGAAGCCTT
CGTGAGCCGGGAGGACGGAGTCAGCATCGTCGTCGAGGTGCTGTCCTTCG
AGGCCGATATTTCAATGCCGTCGGAGTCGGATGGGGGAGACGGCAGAGGC
GGCTCGAGCGCGCGCCACTTCTTCGACGACCTTGCGGCCGCAAACGGCGC
CACGGCGTCTACTTGTGATTTCTGCGCAGACATGACTGACAGGTGAGAAA
GGAAGTGCCTTCCCTGCTTCGGCCAGCACGCGTTGATCTACATTCATACA
GCAGTATTTACCCATGCTGAGGAAGGCGGGTCGTGAACCTCGCGCTATGT
TCTATTTATGTATGGTATGAAACATCATTGACGACGAGAAATATAATCCT
CTATTTTTTTTACTGCGGAGAGTTGCTACTTGCTGCTGCTGCTGCTGCTG
CTGCTGCGCTTTTACGTTCGCTTCATGCCGGGTTCTCCCTTTCTGGAATT
ATGTCGTGCACACAACACCAGCCCCACTGCCATCGATTGTTGGGGGCGAA
CGTTTCTCTACCCCCAATCTCGTTGGATAGAACTCCGCCGGCGAAGAGAC
CAACCATCGTGCATACATACCACAGGCTTGAAGCCAGTGACTCGAGTAAG
TGTAAATTGTTGGCTTGAGCCGGTCGGGCGGTGGCGGGACCTTCATAGAC
CCAACTAGAGCAGCACAGCGGCCGGCGTTCTCCGCCGGCGGCGGCTGCTT
TCGTGCTGTGTCGCTGCCCCTATCCTCTCCGGTCGATCAATGCCCCCCTC
CGACCGATCAATGAATGCCCCCCGACTCCTCTTTCAGTATCATCTTCCGT
CAGATGAAAGGGTAGTGCTACAACGCCGAGCCCTCCACAATACAATTAAG
TTGACATGCCAGTGGTTCGGAACAAAAATCGCCTCTATTCCTCGGGGTGG
GGTGGGGGGTGGCTCGTTCTGTCTCATCAGCATCATGCCGAAGCTGCCCG
GTTACTCCAAGGCGGCCTTGGTCGGGAGACAGACGGTGGCCAAGTTCCGG
GAGGATGCCCCTCCCGAGGCTGTTCGGTTGTACCTTGTGAATGTTCGGTG
AGCAACAAGGACATTTTTTTTTCTTTTTTTTCCGTTCGTTCGTTTTGTGT
GTCGTGCGTTTAATATTCACGCGTTGTGTCTACGTGTGTGTTTGTTTTGT
TTTCTCTTGGTGTTTGTGTTTTGTTCTCGCTTCTCGCCATCCTCGGTTGT
ACCGCGACTGCTGTTGCATGGCACATCTTGGTTGTGGCGGGTGCCAGGGA
CCTTTCGGGACTCCGCACATACGTGTCTAACCAATTGCCCGAGCTCTGTT
TTGTCTCGGCTGTTGCCGCCTGAACGCTAGAAAAGTTGGGATTCTCAGCT
ATTTTTGACTCCTTCCTTGCTGATAGTTTCCGCTAAAAACCAGGCGCCGC
CGCCAAGATGAAACGTGCGGGTCATGTGCCAGTTTTTATTTCGCCGGACG
TTCGCTTTTTTTTCTCTCGTCTTTCGGAGGGACTTTGGGGCGAGTAGTGA
GGAACCCGGTGAAAAGGGTCCTACACGGATGCTGATACAGCCAGGTTCCC
TACATTCTATGTACATACTGCGGTACAATAGCGGAAAGTCGCCCGAAAAG
AGTTGCGCAGCTGATGTATTCACTCAACCCCCGTTGAAAAAGTTTCTCCA
CGACGGAGCACCTGTTGCCAATCAACTCAACTCACCGGCGTCAGAAACCA
CCGGGCGAGATCGGACCCCTCTCATGGCCCCTCACATCCGTTTTATCTAC
TTCGTACATATTTAAACGCCGATCCGATTTGAAGCGTTTGATATTGTTGC
TGGTGGTCGGTTCGTTCGCTGGTCACTCGATTTTATGCTTGAATACGTTG
TTGTTTTTTCTACTCGTTGGTTCTTGTTGCCCGCCGCCGCGACCGCCGCC
GCCGCCGCCGCAGGCTCCCGCACGTGGGCACCGACCTCCTCATCACAGTC
AACGTGCCGCACCCGGACGAAGACGCCGCAGCGAGTTCACCGGCGAGCGC
CGAGTGCTTCCTTCCGACCACCGCCGCCGCCGCCGCCGCGGACACAGCGG
CATCGGGAGAAGCGTCCCCGGGGGCCGCGCAAGCGCCGACTGTAGCGGGC
GGTGCGCTGGCATCGGAGGGTGCATCATCCGGCGCTGGGACAGAAATTTC
TCGGGAGGAAGAGGAGGCGGCGGCGGAAAGAGCGGGGGAGGAAGAGCGGA
CAGAGAAGGTGTTATCAGAAAGGGCTCGAGTCGTCGATGCGCCCGAAGGG
TTTGCTCGGGAGGAGGCAGCAGCAGCAGCAGCAGGCACGAGGGCCGCGGC
GGAAGGCGGCGACGAGGATGGGCGGCTGATTTTTTCGTCCGCTGGTGGCG
GAGATCTCGATGCCGGCGTTGCCGCTCTCCGGCCTCTCCTGCACTCCTTC
GCCATCTTGGAGTGGTCGCTGTTTGGATAAGAAAAATAATAGAGAGGATT
GGGGGCGGAGGGGGTTGGGGGGGTCGGCTGATTTTGTGGACGCTACATAC
CCCCGTTCCGCGTGGGCTTTCAGCGTTGGCGTTTTGTTTTTGGAAAACGG
TTCGTGGTACCCCGTAGACCACACCTGATTGTTTTAAGCCTGTCTGCACG
TCTTTTTTTTTGTCTCGTCTCCCACCGGACCATCAGAGGGCGTACGCCGT
AAATAAACGTGAAGATTTATTTTGTGGGGAGACAGGTTCCGAGCGGCATC
TCGTAACGCTGAGAGCAGCACCCTGAAGAGCCGTCAGAGCGCCTACTGTT
GTACCCTTTTGCACTCAGCAGCAGACGGGTATAATCAAGGAACTGCCGTG
AACTTTTGATCGTGGAGGGCCGCAATAGATGACGAAAACACGCAAAGCCG
TTCACCGCCAACCAAGGGTCTGGAGTTGCTCGAGTTGGATTGAAAGCAGC
TTTCGCCTTTAGCCTTCTGCCGGATGGCTCGTAACAGCGAAGAGAGGGCA
GACACGATCAGATCCGGAATCGTGACCGACTTACATATGATACAATAGAT
TGCCTAGGGTCTGGAGGTTACCCTAGGCTGCTTCCTTAGTTTTTTGTATT
GTCAGTTGTCAATGACCGACCTACATATGATGCAATACCTGTGTGTTGGC
TGTGTGGCTTGGGAATTTGTTTGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1333:21690..26065-

>mRNA_L-elsbetiae_contig1333.2578.1 ID=mRNA_L-elsbetiae_contig1333.2578.1|Name=mRNA_L-elsbetiae_contig1333.2578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1914bp|location=Sequence derived from alignment at L-elsbetiae_contig1333:21690..26065- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCGGCGAACAACCCTTCGGGTGCTACCCTTCGGAAGCTATTCGG
AGGCGCGATGGAGTGCTTGCTGCCGGCGGCGTACATGGACGTGAGATGGC
AGCGGCGAACAACCCTTCGGGTGCTACCCTTCGGAAGCTATTCGGAGGCG
CGATGGAGTGCTTGCTGCCGGCGGCGTACATGGACGTGAGTGATCTTCGA
CAAGTGCCCGACCATCAAGAAGCCTTCGTGAGCCGGGAGGACGGAGTCAG
CATCGTCGTCGAGGTGCTGTCCTTCGAGGCCGATATTTCAATGCCGTCGG
AGTCGGATGGGGGAGACGGCAGAGGCGGCTCGAGCGCGCGCCACTTCTTC
GACGACCTTGCGGCCGCAAACGGCGCCACGGCGTCTACTTGTGATTTCTG
CGCAGACATGACTGACAGTGATCTTCGACAAGTGCCCGACCATCAAGAAG
CCTTCGTGAGCCGGGAGGACGGAGTCAGCATCGTCGTCGAGGTGCTGTCC
TTCGAGGCCGATATTTCAATGCCGTCGGAGTCGGATGGGGGAGACGGCAG
AGGCGGCTCGAGCGCGCGCCACTTCTTCGACGACCTTGCGGCCGCAAACG
GCGCCACGGCGTCTACTTGTGATTTCTGCGCAGACATGACTGACAGCATC
ATGCCGAAGCTGCCCGGTTACTCCAAGGCGGCCTTGGTCGGGAGACAGAC
GGTGGCCAAGTTCCGGGAGGATGCCCCTCCCGAGGCTGTTCGGTTGTACC
TTGTGAATGTTCGCATCATGCCGAAGCTGCCCGGTTACTCCAAGGCGGCC
TTGGTCGGGAGACAGACGGTGGCCAAGTTCCGGGAGGATGCCCCTCCCGA
GGCTGTTCGGTTGTACCTTGTGAATGTTCGGCTCCCGCACGTGGGCACCG
ACCTCCTCATCACAGTCAACGTGCCGCACCCGGACGAAGACGCCGCAGCG
AGTTCACCGGCGAGCGCCGAGTGCTTCCTTCCGACCACCGCCGCCGCCGC
CGCCGCGGACACAGCGGCATCGGGAGAAGCGTCCCCGGGGGCCGCGCAAG
CGCCGACTGTAGCGGGCGGTGCGCTGGCATCGGAGGGTGCATCATCCGGC
GCTGGGACAGAAATTTCTCGGGAGGAAGAGGAGGCGGCGGCGGAAAGAGC
GGGGGAGGAAGAGCGGACAGAGAAGGTGTTATCAGAAAGGGCTCGAGTCG
TCGATGCGCCCGAAGGGTTTGCTCGGGAGGAGGCAGCAGCAGCAGCAGCA
GGCACGAGGGCCGCGGCGGAAGGCGGCGACGAGGATGGGCGGCTGATTTT
TTCGTCCGCTGGTGGCGGAGATCTCGATGCCGGCGTTGCCGCTCTCCGGC
CTCTCCTGCACTCCTTCGCCATCTTGGAGTGGTCGCTGTTTGGATAAGCT
CCCGCACGTGGGCACCGACCTCCTCATCACAGTCAACGTGCCGCACCCGG
ACGAAGACGCCGCAGCGAGTTCACCGGCGAGCGCCGAGTGCTTCCTTCCG
ACCACCGCCGCCGCCGCCGCCGCGGACACAGCGGCATCGGGAGAAGCGTC
CCCGGGGGCCGCGCAAGCGCCGACTGTAGCGGGCGGTGCGCTGGCATCGG
AGGGTGCATCATCCGGCGCTGGGACAGAAATTTCTCGGGAGGAAGAGGAG
GCGGCGGCGGAAAGAGCGGGGGAGGAAGAGCGGACAGAGAAGGTGTTATC
AGAAAGGGCTCGAGTCGTCGATGCGCCCGAAGGGTTTGCTCGGGAGGAGG
CAGCAGCAGCAGCAGCAGGCACGAGGGCCGCGGCGGAAGGCGGCGACGAG
GATGGGCGGCTGATTTTTTCGTCCGCTGGTGGCGGAGATCTCGATGCCGG
CGTTGCCGCTCTCCGGCCTCTCCTGCACTCCTTCGCCATCTTGGAGTGGT
CGCTGTTTGGATAA
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