prot_L-elsbetiae_contig1333.2577.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1333.2577.1
Unique Name	prot_L-elsbetiae_contig1333.2577.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	258

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 1.550e-112
Identity = 184/209 (88.04%), Postives = 192/209 (91.87%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRSRSPA 209
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFAD++DAGDAV++IDGKSI+GREWRVE+SHQRGRDRG    XXXX   XXXXXXXXXXXXXXXX GAPR GGAAPRTG+KVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDD G+       PA
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGXXXX---XXXXXXXXXXXXXXXXYGAPRVGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGXXXXXXPA 206

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 6.550e-66
Identity = 132/206 (64.08%), Postives = 140/206 (67.96%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEI------------------------------------------SHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 164
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFAD++DA DAV+++DG+SI+GREWRVEI                                          SHQRGRDRG        GYG  XXXXXXXXXXXXXXX             +KVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGRDRGPPGG----GYGGGXXXXXXXXXXXXXXXXXXXX----XXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 198

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 193 bits (490), Expect = 9.300e-58
Identity = 116/222 (52.25%), Postives = 146/222 (65.77%), Query Frame = 0

Query:    1 MGD--VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISH-QRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNA-----------RGRSRSP 208
            MGD    GTKV++GN+     E +LRDEF+++G L +VW+ARNPPGFAFVWF+D +DA DAV+ +DG  ++G+  RVEISH +RGR   XXXX    GYG       XXXXX       PRAGGA  +TGFKVRI+ LP    W+ELKDF+RK GD+ YA+    EGVAEF++RD M RA REL DT F DRRI ++ +D  +            RGRSR+P
Sbjct:    1 MGDREESGTKVFIGNVEG-ISEGELRDEFARYGRLTQVWIARNPPGFAFVWFSDIRDAEDAVRGLDGSQLNGKPIRVEISHNRRGRRXXXXXXGRGGGYGDRDRGYDXXXXXSSRPP--PRAGGAPRKTGFKVRISNLPANAHWTELKDFMRKVGDIIYANAENGEGVAEFADRDGMERAYRELHDTTFGDRRIVIEMNDESDRYRRDSRSPPPRRGRSRTP 219

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 148 bits (373), Expect = 5.860e-40
Identity = 94/211 (44.55%), Postives = 124/211 (58.77%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAP--RTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARG----RSRSPA 209
            GT+V+VG L      R+++D FS++G ++ +WVARNPPGFAFV F D +DA DA++ +DG+   G   RVEI+  RG  R         G G      XXXXXXXX   G  R  G  P  RT F+VRIT LP G  W  +KDF+R  G+VTY D+  D   VAEF +++DM  A+++LDDT F    +R+  +  G        RSRSPA
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFSRYGHVSNIWVARNPPGFAFVDFEDPRDAEDAIRALDGRDFLGGRIRVEIA--RGGSR-----RDDGGRGRGGDFGXXXXXXXXRDRGFDRGAGRNPPQRTDFRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRLIPESGGGGNDSSSRRSRSPA 205

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.430e-37
Identity = 77/204 (37.75%), Postives = 114/204 (55.88%), Query Frame = 0

Query:    8 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPR---TGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRSRSP 208
            +V+VG +  +   R++ + F +FG++  VW+ARNPPGFAFV F D +DA DA+KD+DGK + G   RV+++  RG  R          Y                        G++ R   +G KVRITGLP    W ++KDFVRKAGDV++ D+ GD+ + E +++ D+   +R+LDDT F  RR+ +        R RS+SP
Sbjct:    5 RVYVGGIPKSAGNREIEEAFQRFGKIVNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMA--RGGVRRGGRGDRDRSY----------------------RDGSSDRHRSSGHKVRITGLPRNADWRDVKDFVRKAGDVSFCDMDGDDAIVELASKFDLENVIRKLDDTEFDGRRVSIKA-----VRDRSQSP 179

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A484E7I0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7I0_BRELC)

HSP 1 Score: 142 bits (359), Expect = 3.120e-37
Identity = 78/205 (38.05%), Postives = 113/205 (55.12%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRSRSPA 209
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D +DA DA++ +DG+   G   RVE++    R  G         +G                    R      RT F+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  AV++LDDT F    +RV  +  G++  RSRSPA
Sbjct:   90 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGREFLGGRIRVELARGGSRRDGGGRRGDDERFGRGGSGGDRVE----------RGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAVKKLDDTEFRGSYVRVAPE--GDSSRRSRSPA 282

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A7S3PMS3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMS3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.670e-36
Identity = 108/201 (53.73%), Postives = 135/201 (67.16%), Query Frame = 0

Query:    7 TKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAP-RTG-FKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRS 205
            +K++VGN+     E +L D+F K+G+++ VW+ARNPPGFAFV F D +DA DA+KD++ +   GR  RVE+S +R     XXXXXXXX   XXXXXXXXXXXXXXXXX   R G     R G F+V ITGLP    W +LKDF+R+ G+V YADVR  EGVA+F   DDM RAVR+LD T F    I +  +D G  R RS
Sbjct:    2 SKLYVGNIPDDTREGELEDKFKKYGKISSVWLARNPPGFAFVTFDDPRDAEDAMKDMNDREFLGRRIRVELSKERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGRHRDYRQGEFRVIITGLPSRCSWQDLKDFLRRGGEVCYADVRDGEGVADFLTADDMDRAVRKLDGTDFDGGPITIK-EDRGGRRDRS 201

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A8K1CTI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI4_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 2.170e-35
Identity = 87/207 (42.03%), Postives = 120/207 (57.97%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGR-DRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAP--RTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRSRSP 208
            GT+V++G L      R+++D FS++G +  +W+ARNPPGFAFV F D +DA DA++ +DG+   G   RVE++    R DR XXXXXXXX  G                      GG  P  RT F+VRIT LP G+ W ++KD +R AG+VT+ +V  D   +AEF +RDD+  A+ +LDD  F    IR+    +   R RSRSP
Sbjct:    2 GTRVYIGGLPRDATSREVQDGFSRYGHIANIWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELAKGGSRRDRXXXXXXXXXXRGGDRF----------------ERGGRNPPQRTEFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVENDGTAIAEFQSRDDVQNAIEKLDDKEFRGSYIRITAA-SSEERSRSRSP 191

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: G4YPP5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPP5_PHYSP)

HSP 1 Score: 133 bits (335), Expect = 2.330e-35
Identity = 75/186 (40.32%), Postives = 107/186 (57.53%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDR----GXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYF 186
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D +DA DA++ +DG+   G   RVE++  RG  R    G XXXX   GYG                    R      RT ++VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  A+++LDDT F
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELA--RGGSRRDGGGRXXXXDRGGYGGRGGDRFD------------RGRNPPQRTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAIKKLDDTEF 173

[Close]

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: H3GHB6_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3GHB6_PHYRM)

HSP 1 Score: 134 bits (337), Expect = 1.020e-34
Identity = 93/206 (45.15%), Postives = 129/206 (62.62%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGR-DRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNAR-GRSRSP 208
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D +DA DA++ +DG+   G   RVE++    R D  XXXXXXXX   XXXX    XXXXXXX     R      RT F+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF ++ D+  A+++LDDT F    +RV  +   +AR  RSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELARGGSRRDXXXXXXXXXXXXXXXXXDDDRXXXXXXXRDRFERGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQSKQDLDDAIKKLDDTEFRGSYVRVAAEGGDSARRSRSRSP 207

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5E4_ECTSI	1.550e-112	88.04	Similar to arginine/serine-rich splicing factor 7 ...	[more]
A0A6H5L109_9PHAE	6.550e-66	64.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835Z7K1_9STRA	9.300e-58	52.25	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A5D6YQ52_9STRA	5.860e-40	44.55	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A6G0XSF8_9STRA	2.430e-37	37.75	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A484E7I0_BRELC	3.120e-37	38.05	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
A0A7S3PMS3_9STRA	2.670e-36	53.73	Hypothetical protein n=1 Tax=Aplanochytrium stocch...	[more]
A0A8K1CTI4_PYTOL	2.170e-35	42.03	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
G4YPP5_PHYSP	2.330e-35	40.32	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
H3GHB6_PHYRM	1.020e-34	45.15	Uncharacterized protein n=3 Tax=Peronosporaceae Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 129..194 e-value: 5.0E-11 score: 52.6 coord: 8..76 e-value: 3.3E-19 score: 79.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 130..192 e-value: 1.4E-8 score: 34.4 coord: 9..74 e-value: 5.5E-16 score: 58.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 128..198 score: 11.213
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..80 score: 16.858
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..118 e-value: 6.5E-24 score: 86.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 127..197 e-value: 2.2E-16 score: 61.5
None	No IPR available	PANTHER	PTHR23003:SF27	NUCLEOLAR PROTEIN 3	coord: 7..227
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 7..227
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..198

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1333	contig	L-elsbetiae_contig1333:9124..13812 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1333.2577.1	mRNA_L-elsbetiae_contig1333.2577.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1333 7956..13812 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1333.2577.1 ID=prot_L-elsbetiae_contig1333.2577.1|Name=mRNA_L-elsbetiae_contig1333.2577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWF
ADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGGGGGGGGGGYGGGG
GGGGGYGGGGGGGYGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRK
AGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGN
ARGRSRSPARRRSRSPPPRRGSPPRGRSRSPPAAAAPPTGAAAAAAPLAG
TTGTNVQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf