mRNA_L-elsbetiae_contig13323.2573.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13323.2573.1
Unique NamemRNA_L-elsbetiae_contig13323.2573.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13323.2573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13323contigL-elsbetiae_contig13323:364..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004260.2
Exons2
Model size432
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.534636-CDS-L-elsbetiae_contig13323:363..4121622815507.534636-CDS-L-elsbetiae_contig13323:363..412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13323 364..412 +
1691682932.1720693-CDS-L-elsbetiae_contig13323:363..4121691682932.1720693-CDS-L-elsbetiae_contig13323:363..412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13323 364..412 +
1622815507.5507667-CDS-L-elsbetiae_contig13323:881..12611622815507.5507667-CDS-L-elsbetiae_contig13323:881..1261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13323 882..1261 +
1691682932.180524-CDS-L-elsbetiae_contig13323:881..12611691682932.180524-CDS-L-elsbetiae_contig13323:881..1261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13323 882..1261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13323.2573.1prot_L-elsbetiae_contig13323.2573.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13323 364..1261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13323.2573.1

>prot_L-elsbetiae_contig13323.2573.1 ID=prot_L-elsbetiae_contig13323.2573.1|Name=mRNA_L-elsbetiae_contig13323.2573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
GGGGRGRRAVLDVAMPGVRGLHVNLAGSPISSRRQGAEGSGDNDDGYDGY
DDDDDDASSSRERWKREWNRATGAGGRGHDDGAARAREPAAAAAAAVSCL
PSRRRRASASSGGGVGGRGGGVAQERVGATVRVAWGGEGGGGG
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mRNA from alignment at L-elsbetiae_contig13323:364..1262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13323.2573.1 ID=mRNA_L-elsbetiae_contig13323.2573.1|Name=mRNA_L-elsbetiae_contig13323.2573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=899bp|location=Sequence derived from alignment at L-elsbetiae_contig13323:364..1262+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTGGTGGTCGTGGTCGCCGCGCTGTGCTGGACGTGGCGATGCCAGG
TGCGATTTCGTTTTTTGCAAGTTATTCATGTCGTGTTCACCCCACCCATC
CCGTCCGATTCAGTCCAGTCAGCCCAACATCCGGCCGACGAGACTTGGAA
ACAGGTGCAGATGCAGTGCAGAAAGAGAGCCGGTGGCTTCGTCGTTGTAT
ATTACCGATACTGTTGTGTGTGTATGTGTTCTCCTGAGTGCTCTTTCTGC
CAAGTTGGCAGGACCGTGGGGTCTCCCAGAAGCAATTATTAGCCATGTGT
GTTGTTGTCAAGTGTAAGTACGCGGCTGAACTGAATAGTGCAACGTGCCG
CGAACACACCGAACGCCAAAACGATTGCTGCAGAGACCACAACGCTGTTG
CCGGGTCTCGTTTCATTGCGCGTGGCTTGAACACCCTCTGCCGATGCCTC
TGCCGGTGCCTCTGCCGATGCCGACCCGCATGCGTGCGTGTGTGCGTGCG
GTACATACACACGGCCAGGCGTGCGAGGGCTGCATGTCAACCTGGCTGGG
TCGCCGATCTCGTCGCGCCGACAAGGCGCCGAGGGCAGCGGCGACAATGA
CGACGGTTACGACGGTTACGACGACGATGATGACGACGCCTCGTCAAGTC
GGGAGCGCTGGAAAAGAGAGTGGAACCGAGCCACCGGCGCCGGGGGACGC
GGGCACGATGATGGCGCAGCACGAGCACGAGAACCAGCGGCAGCGGCGGC
GGCGGCGGTCTCCTGTCTGCCGTCGAGAAGACGCAGAGCAAGCGCGAGCA
GCGGCGGCGGTGTTGGCGGCCGCGGCGGCGGCGTAGCACAAGAACGTGTC
GGGGCGACGGTACGGGTTGCGTGGGGCGGAGAAGGTGGAGGAGGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13323:364..1262+

>mRNA_L-elsbetiae_contig13323.2573.1 ID=mRNA_L-elsbetiae_contig13323.2573.1|Name=mRNA_L-elsbetiae_contig13323.2573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig13323:364..1262+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTGGTGGTCGTGGTCGCCGCGCTGTGCTGGACGTGGCGATGCCAGG
GTGGTGGTGGTCGTGGTCGCCGCGCTGTGCTGGACGTGGCGATGCCAGGC
GTGCGAGGGCTGCATGTCAACCTGGCTGGGTCGCCGATCTCGTCGCGCCG
ACAAGGCGCCGAGGGCAGCGGCGACAATGACGACGGTTACGACGGTTACG
ACGACGATGATGACGACGCCTCGTCAAGTCGGGAGCGCTGGAAAAGAGAG
TGGAACCGAGCCACCGGCGCCGGGGGACGCGGGCACGATGATGGCGCAGC
ACGAGCACGAGAACCAGCGGCAGCGGCGGCGGCGGCGGTCTCCTGTCTGC
CGTCGAGAAGACGCAGAGCAAGCGCGAGCAGCGGCGGCGGTGTTGGCGGC
CGCGGCGGCGGCGTAGCACAAGAACGTGTCGGGGCGACGGTACGGGTTGC
GTGGGGCGGAGAAGGTGGAGGAGGAGGAGCGTGCGAGGGCTGCATGTCAA
CCTGGCTGGGTCGCCGATCTCGTCGCGCCGACAAGGCGCCGAGGGCAGCG
GCGACAATGACGACGGTTACGACGGTTACGACGACGATGATGACGACGCC
TCGTCAAGTCGGGAGCGCTGGAAAAGAGAGTGGAACCGAGCCACCGGCGC
CGGGGGACGCGGGCACGATGATGGCGCAGCACGAGCACGAGAACCAGCGG
CAGCGGCGGCGGCGGCGGTCTCCTGTCTGCCGTCGAGAAGACGCAGAGCA
AGCGCGAGCAGCGGCGGCGGTGTTGGCGGCCGCGGCGGCGGCGTAGCACA
AGAACGTGTCGGGGCGACGGTACGGGTTGCGTGGGGCGGAGAAGGTGGAG
GAGGAGGA
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