mRNA_L-elsbetiae_contig13322.2572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE) HSP 1 Score: 202 bits (515), Expect = 6.500e-60 Identity = 95/138 (68.84%), Postives = 114/138 (82.61%), Query Frame = -1 Query: 118 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQLDR 531 CIGW SKRKR+DRPLS+AQ L+Q GCEE+IEATVRKRRLCFAGFV RMED+RLPKR+LLG M+GG GY+GGQERDWV LGE LVAF M D++EG KW++SA + E W+ K++ G A FMR+WH ++ EASAKR R Sbjct: 25 CIGW-SKRKRSDRPLSHAQALIQAGCEETIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRXXXR 161
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5KU62_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU62_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.050e-59 Identity = 107/169 (63.31%), Postives = 127/169 (75.15%), Query Frame = -1 Query: 25 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQLDR*GGEGNCHGRCWAEEKEAWEIRGGTEKTEVG 531 CIGW SKRKR+DRPLSYAQ L+Q GCEE+IEATVR+RRLCF GFVMRMED RLPKR+LLG M+GG GY+GGQE DWV LGEDLVAF M DE+EG KW++SA SE W+ K++ G A FMR+WH ++ EASAKRQ R +G E+KE+ GG E+T G Sbjct: 303 CIGW-SKRKRSDRPLSYAQALIQAGCEETIEATVRQRRLCFGGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAR-ESRSREYGHLRTEDKESRGSVGGGEETATG 469
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE) HSP 1 Score: 202 bits (515), Expect = 1.820e-58 Identity = 96/137 (70.07%), Postives = 111/137 (81.02%), Query Frame = -1 Query: 121 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQLD 531 CIGW SKRKR+DRPLSYAQ L+Q GCEE+IEATVRKRRLCFAGFVMRMED+RLPKR+LLG M GG G +GGQE DWV LGEDLVAF M DE+EG KW++SA + E W+ K++ GVA MR WH + EAS KRQ + Sbjct: 114 CIGW-SKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMGGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGVACLMREWHRHEAEASVKRQRE 249
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE) HSP 1 Score: 209 bits (532), Expect = 2.660e-58 Identity = 98/138 (71.01%), Postives = 117/138 (84.78%), Query Frame = -1 Query: 118 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQLDR 531 CIGW SKRKR+DRPLSYAQ L+Q GCEE+IEATVRKRRLCFAGFVMRMED+RLPKR+LLG M+GG GY+GGQE DWV LGEDLVAF M++E+EG +W++SA + E W+ KI+ G A FMR+WH ++ EASAKRQ R Sbjct: 346 CIGW-SKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRAR 482
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5JYX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX0_9PHAE) HSP 1 Score: 200 bits (508), Expect = 3.440e-58 Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = -1 Query: 118 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVM-RMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQLDR 531 CIGW SKRKR+DRPLSYAQ L+Q GCEE+IEATVRKRRLCFAGFV+ RMED RLPKR+LLG M+GG GY+GGQE DWV LGEDLVAF M DE+EG KW++SA E W+ KI+ G A MR+WH ++ EASAKRQ R Sbjct: 50 CIGW-SKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVVVRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKIEDGAAWLMRKWHRQEAEASAKRQRAR 187
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5K1C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C5_9PHAE) HSP 1 Score: 201 bits (512), Expect = 7.650e-58 Identity = 93/135 (68.89%), Postives = 113/135 (83.70%), Query Frame = -1 Query: 127 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQ 531 CIGW SKRKR+DRPLSYAQ L+Q GCEE+IEATVRKRRLCFAGFVMRMED+RLP R+LLG M+GG GY+GGQE DWV LGEDLVAF M DE+EG KW++SA SE W+ K++ G A FMR+WH ++ EA+ +++ Sbjct: 137 CIGW-SKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPTRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEATEEKE 270
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE) HSP 1 Score: 199 bits (506), Expect = 1.230e-57 Identity = 94/138 (68.12%), Postives = 110/138 (79.71%), Query Frame = -1 Query: 118 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQLDR 531 CIGW SKRKR+DRPLSYAQ L+Q GCEE+IEATVRKRRLCFAGFVMRMED RLPK +LLG M+GG GY+GGQE DWV LGEDLVAF M DE+EG KW++SA + E W+ K++ FMR+WH ++ E SAK Q R Sbjct: 52 CIGW-SKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQEAETSAKHQRAR 188
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5L649_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L649_9PHAE) HSP 1 Score: 200 bits (509), Expect = 2.760e-57 Identity = 92/137 (67.15%), Postives = 113/137 (82.48%), Query Frame = -1 Query: 121 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQLD 531 C+GW S+RKR+ RPLSYAQ ++Q GCEE+IEATVRKRRLCFAGFVMRMED+RLPK +LLG M+GG GY+GGQE DWV LGEDLVAF M DE+EG KW++SA + E W+ K++ G A FMR+WH ++ E SAKRQ + Sbjct: 156 CVGW-SRRKRSHRPLSYAQAVIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKHILLGAMAGGVGYRGGQEDDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYHKVEDGAAWFMRKWHRQEAEESAKRQRE 291
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE) HSP 1 Score: 201 bits (512), Expect = 3.360e-57 Identity = 96/135 (71.11%), Postives = 112/135 (82.96%), Query Frame = -1 Query: 127 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKRQ 531 CIGW SKRKR+DRPLSYAQ L+Q GCEE+IEATVRKRRLCFAGFVMRMED RLPKR+LLG M+GG GY+GGQ DWV LGE LVAF M DE+EG KW++SA +SE W+ K++ A FMR+WH ++ EASAKRQ Sbjct: 156 CIGW-SKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQGSDWVSRLGEYLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDVAAWFMRKWHRQEAEASAKRQ 289
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Match: A0A6H5JEU3_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEU3_9PHAE) HSP 1 Score: 201 bits (511), Expect = 4.720e-57 Identity = 94/134 (70.15%), Postives = 111/134 (82.84%), Query Frame = -1 Query: 130 CIGWRSKRKRTDRPLSYAQTLLQTGCEESIEATVRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVCYLGEDLVAFCMEDEREGAKWQKSALESEEWFGKIDGGVARFMRRWHARKTEASAKR 531 CIGW SKRKR+DRPLSYAQ L+Q GCEE+IEATVRKRRLCFAG +MRMED RLPKR+LLG M+GG GY+GGQE DWV LGEDLVAF M DE+EG KW++SA + E W+ K++ G A MR+WH ++ EASAKR Sbjct: 156 CIGW-SKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGNIMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWLMRKWHRQEAEASAKR 288 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13322.2572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13322.2572.1 >prot_L-elsbetiae_contig13322.2572.1 ID=prot_L-elsbetiae_contig13322.2572.1|Name=mRNA_L-elsbetiae_contig13322.2572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=303bp ALPAATAVSDFRFFRSPSDFPRLFLFGPAAAVAVAFTSLSIELPLRGGLCback to top mRNA from alignment at L-elsbetiae_contig13322:3586..4965+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13322.2572.1 ID=mRNA_L-elsbetiae_contig13322.2572.1|Name=mRNA_L-elsbetiae_contig13322.2572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig13322:3586..4965+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13322:3586..4965+ >mRNA_L-elsbetiae_contig13322.2572.1 ID=mRNA_L-elsbetiae_contig13322.2572.1|Name=mRNA_L-elsbetiae_contig13322.2572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1818bp|location=Sequence derived from alignment at L-elsbetiae_contig13322:3586..4965+ (Laminarionema elsbetiae ELsaHSoW15)back to top |