mRNA_L-elsbetiae_contig1332.2571.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1332.2571.1
Unique NamemRNA_L-elsbetiae_contig1332.2571.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1332.2571.1 vs. uniprot
Match: A0A6H5L7D6_9PHAE (4F5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.380e-17
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 MARGNQRDRDRMKAQAKDAKKGGKSKEGCPRARQERDAQAMREK 132
            MARGNQRDRDR+KAQAK+AKKGGKSKEGCPRARQERDAQAMREK
Sbjct:    1 MARGNQRDRDRLKAQAKEAKKGGKSKEGCPRARQERDAQAMREK 44
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BLAST of mRNA_L-elsbetiae_contig1332.2571.1 vs. uniprot
Match: A0A7C9DPE2_OPUST (4F5 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DPE2_OPUST)

HSP 1 Score: 50.4 bits (119), Expect = 3.330e-6
Identity = 30/53 (56.60%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 MARGNQRDRDRMKAQAKDAKKGGKSKEG--CPRARQERDAQAMREKQARKAAE 153
            M+RGNQR+ DR +AQ+++AKKGGK+K+    P  R+ERDA+A++EK A+KAA+
Sbjct:   47 MSRGNQREIDRQRAQSRNAKKGGKNKDDGLTPEQRRERDAKALQEKAAKKAAQ 99
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BLAST of mRNA_L-elsbetiae_contig1332.2571.1 vs. uniprot
Match: UPI000B8CCF42 (putative SERF-like protein n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CCF42)

HSP 1 Score: 48.1 bits (113), Expect = 1.030e-5
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 MARGNQRDRDRMKAQAKDAKKGGKSKEG--CPRARQERDAQAMREKQARKAAE 153
            M RGNQR+RDR +AQ++   KGGK K+    P  R+ERDA+A++EK A+KAA+
Sbjct:    1 MTRGNQRERDRERAQSRSTNKGGKGKDDGLTPEQRRERDAKALQEKAAKKAAQ 53
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BLAST of mRNA_L-elsbetiae_contig1332.2571.1 vs. uniprot
Match: UPI000D1C6B93 (uncharacterized protein LOC112342205 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C6B93)

HSP 1 Score: 47.4 bits (111), Expect = 2.170e-5
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 MARGNQRDRDRMKAQAKDAKKGGKSKEGC-PRARQERDAQAMREKQARKAA 150
            M RGNQR++DR +AQA+ AK GGK+K+   P  R+ERDA+A++EK ARKAA
Sbjct:    1 MTRGNQREKDRERAQARSAK-GGKAKDDLTPEQRRERDAKALQEKNARKAA 50
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BLAST of mRNA_L-elsbetiae_contig1332.2571.1 vs. uniprot
Match: UPI000B78714B (putative SERF-like protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78714B)

HSP 1 Score: 47.0 bits (110), Expect = 3.000e-5
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 MARGNQRDRDRMKAQAKDAKKGGKSKEG--CPRARQERDAQAMREKQARKAAE 153
            M RGNQR+RDR +AQA+   KGGK+K+    P  R+ERDA+A++EK A+KA +
Sbjct:    1 MTRGNQRERDRERAQARTTGKGGKTKDDGLTPEQRRERDAKALQEKAAKKAGQ 53
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BLAST of mRNA_L-elsbetiae_contig1332.2571.1 vs. uniprot
Match: A0A329SWQ1_9STRA (4F5 domain-containing protein n=11 Tax=Peronosporaceae TaxID=4777 RepID=A0A329SWQ1_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 6.310e-5
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 MARGNQRDRDRMKAQAKDAKKGGKSKEGCPRARQERDAQAMREKQARKAA 150
            M RGNQRD DR +AQA+ AK    + +G P A++E DA+A++EK ARKAA
Sbjct:    1 MTRGNQRDTDRARAQARQAKNAKSTSQGNPLAKREADAKALQEKIARKAA 50
[Close]
BLAST of mRNA_L-elsbetiae_contig1332.2571.1 vs. uniprot
Match: UPI000772B93C (putative SERF-like protein n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI000772B93C)

HSP 1 Score: 45.8 bits (107), Expect = 8.360e-5
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 MARGNQRDRDRMKAQAKDAKKGGKSKEG--CPRARQERDAQAMREKQARKAAE 153
            M RGNQR+RDR +AQA+   KG K K+    P  R+ERDA+A++EK A+KAA+
Sbjct:    1 MTRGNQRERDRERAQARTGGKGSKGKDDGLTPEQRRERDAKALQEKTAKKAAQ 53
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1332.2571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L7D6_9PHAE1.380e-1795.454F5 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7C9DPE2_OPUST3.330e-656.604F5 domain-containing protein n=1 Tax=Opuntia stre... [more]
UPI000B8CCF421.030e-554.72putative SERF-like protein n=1 Tax=Carica papaya T... [more]
UPI000D1C6B932.170e-560.78uncharacterized protein LOC112342205 n=1 Tax=Selag... [more]
UPI000B78714B3.000e-554.72putative SERF-like protein n=1 Tax=Hevea brasilien... [more]
A0A329SWQ1_9STRA6.310e-556.004F5 domain-containing protein n=11 Tax=Peronospora... [more]
UPI000772B93C8.360e-554.72putative SERF-like protein n=1 Tax=Ricinus communi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1332contigL-elsbetiae_contig1332:21104..22823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised protein family SERF
Ec32 orthologEc-07_006320.1
Exons2
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.3653007-CDS-L-elsbetiae_contig1332:21103..212101622815507.3653007-CDS-L-elsbetiae_contig1332:21103..21210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 21104..21210 +
1691682932.1347935-CDS-L-elsbetiae_contig1332:21103..212101691682932.1347935-CDS-L-elsbetiae_contig1332:21103..21210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 21104..21210 +
1622815507.3773632-CDS-L-elsbetiae_contig1332:22711..228231622815507.3773632-CDS-L-elsbetiae_contig1332:22711..22823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 22712..22823 +
1691682932.1438591-CDS-L-elsbetiae_contig1332:22711..228231691682932.1438591-CDS-L-elsbetiae_contig1332:22711..22823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 22712..22823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1332.2571.1prot_L-elsbetiae_contig1332.2571.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1332 21104..22823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1332.2571.1

>prot_L-elsbetiae_contig1332.2571.1 ID=prot_L-elsbetiae_contig1332.2571.1|Name=mRNA_L-elsbetiae_contig1332.2571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MARGNQRDRDRMKAQAKDAKKGGKSKEGCPRARQERDAQAMREKQARKAA
EKEAAAKEAAEAAAAAAAAAKK*
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mRNA from alignment at L-elsbetiae_contig1332:21104..22823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1332.2571.1 ID=mRNA_L-elsbetiae_contig1332.2571.1|Name=mRNA_L-elsbetiae_contig1332.2571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1720bp|location=Sequence derived from alignment at L-elsbetiae_contig1332:21104..22823+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGTGGAAACCAGCGAGACCGGGACCGCATGAAAGCCCAGGCGAA
GGACGCCAAAAAGGGTGGAAAGAGCAAGGAGGGCTGCCCACGGGCTAGAC
AAGAGAGGTGAGCTTCACACCCCTTCCACGTCTATGTATGTATTTTACGT
CGAAGGCGAAGGGTTCGGTCGCACGTTGGCGCTGGTACTACAACTATCTC
ATGTGCGGCTGGAAGGCTTTGTGCGTACTCTGTTATTTGGGGGAAGTATA
TTACATACATACACACATATCATATGTACGTCTGAGAGAGAGAGGAAGTT
TTACTTCTACCTGGTATTTTTTTTAGAGAGTGACGCGCACGCCTCCTTGC
CTCCTTACAAACCTCTACCCTTGGACGCTACAACCGACAACTACCTGTGT
ACTCACGTTGTTGTCCTGAAAAGAGGAAATATGTTTGAGCATTAGCGTGT
TATTCAGTCTAAATACGTGCTGAGAGTGGACAGCAGCACAGGACATCTAA
CGCTCTCTCGACAATTAATTTGATGCCTGCTGTGGAGTGTCGGAGTGTCT
CATTCATCGACACATCGACACATCAAATGATGAGTGTGCTCCATTGGCAC
ACGGTCGTGCAGTGACGTTATATGTGCCGACTTTTGTATATGCATAGACA
GACAGGCATTGAATCAGCGGGATGATTTGGCCACCCGCCATGTATCCTAA
CGTCGCGTGGGAAATACTTGGCGGCTAGGATCAGTAGGTATGTACATAAT
GATACTGATGCCACCTCTCAAAAAGGTGATGCGTGCGTTCTCCGCACTTG
CGTTGTTGCCCGAGTGTTCATGTTCGGTGGTCCCTTTATCCATTCTCCAT
GGAAGGATCTCAGTACGGACTTGCAGTCACCCCGACTGGCGTGTCGTACA
CTGGTGGCACGTGGCATAGATTTGTAGAGATACATAAAATCGTGTGCAAT
TCCCTACATAACCCTAACCCCAGGTGTAGTACATGTCTCCACTTGGGGGG
ACTGTCGCCAAAATAAATGGGAAGGACGCACACACACACACACAACCCCA
ACCGACAGCATTTATTGCTGTAAACTCTCCGTGTCCTTGTCTCGTTGATG
CACACGAACACAGTAGCAGTACATAGGCCCTTCATACTTACTTTATGTAC
ACATAGGCCCTTCATACTTACTTTATGTACATGCTCACTATCTTCCTTGC
AGGATGCCGTGTTTCGTAGTCCTGCTAGATGCCATTCCTGCCTACTGCTA
TCTGCACGTCTATCTCCCTTGCAAAGTGCCGTGTTTCGTAGTCCTGCTAC
AAACCATTCCCGGCTACATACCATTTACTCCTGTGTACCGGTTTAATGTA
GTTTGAGAATTTGCTTTGACCGCTGGCATATCGCACAACCAAAGCCGCCC
CGAGCGAAACCACAGCCCCCAACCTCCAACGCCCTAGGTAGTATGTATGT
ATGTACATACCTATGTAGTACCATTTGGAAGTGCACCGTCAAACAGCATG
TATGTGCTGCAACTTTCGGATGGAGCGGGCTCCGCAAACGTCGTGTAACC
AACCCCCTTGCTGCCCCCCCTCCTTCACCTTGCTTGACAACACGGTTTTG
TGTTCCAGAGATGCGCAGGCGATGAGGGAGAAGCAGGCCCGCAAGGCGGC
GGAAAAAGAGGCCGCGGCAAAGGAAGCCGCCGAAGCCGCTGCGGCCGCCG
CCGCTGCCGCCAAGAAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1332:21104..22823+

>mRNA_L-elsbetiae_contig1332.2571.1 ID=mRNA_L-elsbetiae_contig1332.2571.1|Name=mRNA_L-elsbetiae_contig1332.2571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1332:21104..22823+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGTGGAAACCAGCGAGACCGGGACCGCATGAAAGCCCAGGCGAA
GGACGCCAAAAAGGGTGGAAAGAGCAAGGAGGGCTGCCCACGGGCTAGAC
AAGAGAGATGGCGCGTGGAAACCAGCGAGACCGGGACCGCATGAAAGCCC
AGGCGAAGGACGCCAAAAAGGGTGGAAAGAGCAAGGAGGGCTGCCCACGG
GCTAGACAAGAGAGAGATGCGCAGGCGATGAGGGAGAAGCAGGCCCGCAA
GGCGGCGGAAAAAGAGGCCGCGGCAAAGGAAGCCGCCGAAGCCGCTGCGG
CCGCCGCCGCTGCCGCCAAGAAATGAAGATGCGCAGGCGATGAGGGAGAA
GCAGGCCCGCAAGGCGGCGGAAAAAGAGGCCGCGGCAAAGGAAGCCGCCG
AAGCCGCTGCGGCCGCCGCCGCTGCCGCCAAGAAATGA
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