mRNA_L-elsbetiae_contig13313.2565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13313.2565.1
Unique NamemRNA_L-elsbetiae_contig13313.2565.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13313.2565.1 vs. uniprot
Match: D8LLH2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH2_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.840e-37
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 SSSARLDLSRAERALVEVTAQRDEALELLDAARHENARLSDELDRARSYKALYAAARHEHKGMKASLAASTQICMGQQKLIQMLQQASSAPPTHALDPDELLAGPG 318
            SSS RL L  AE+AL EVTAQRD+ALELL+ +R ENA+L+ ELDRARSYKALYAAA HEH+GMKASLAASTQICMGQQKLIQMLQQASSAPP  ALDP++ LAG G
Sbjct:   30 SSSTRLSL--AEKALAEVTAQRDDALELLELSRQENAKLTAELDRARSYKALYAAAHHEHQGMKASLAASTQICMGQQKLIQMLQQASSAPPP-ALDPEDFLAGVG 132
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BLAST of mRNA_L-elsbetiae_contig13313.2565.1 vs. uniprot
Match: A0A6H5JQY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.200e-5
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:  175 EHKGMKASLAASTQICMGQQKLIQMLQQA 261
            EH+GMKASLAASTQICM QQKLIQMLQQA
Sbjct:    9 EHQGMKASLAASTQICMDQQKLIQMLQQA 37
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13313.2565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLH2_ECTSI1.840e-3779.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQY6_9PHAE2.200e-593.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13313contigL-elsbetiae_contig13313:2463..3724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRiboflavin synthase, putative
Ec32 orthologEc-00_004590.1
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.7488558-CDS-L-elsbetiae_contig13313:2464..26891622815506.7488558-CDS-L-elsbetiae_contig13313:2464..2689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13313 2465..2689 -
1691682931.8028886-CDS-L-elsbetiae_contig13313:2464..26891691682931.8028886-CDS-L-elsbetiae_contig13313:2464..2689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13313 2465..2689 -
1622815506.7742617-CDS-L-elsbetiae_contig13313:3550..37241622815506.7742617-CDS-L-elsbetiae_contig13313:3550..3724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13313 3551..3724 -
1691682931.8239183-CDS-L-elsbetiae_contig13313:3550..37241691682931.8239183-CDS-L-elsbetiae_contig13313:3550..3724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13313 3551..3724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13313.2565.1prot_L-elsbetiae_contig13313.2565.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13313 2465..3724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13313.2565.1

>prot_L-elsbetiae_contig13313.2565.1 ID=prot_L-elsbetiae_contig13313.2565.1|Name=mRNA_L-elsbetiae_contig13313.2565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
SSSARLDLSRAERALVEVTAQRDEALELLDAARHENARLSDELDRARSYK
ALYAAARHEHKGMKASLAASTQICMGQQKLIQMLQQASSAPPTHALDPDE
LLAGPGGGGGGLTPPAPPSPLLQTGGRRGRTLG
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mRNA from alignment at L-elsbetiae_contig13313:2463..3724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13313.2565.1 ID=mRNA_L-elsbetiae_contig13313.2565.1|Name=mRNA_L-elsbetiae_contig13313.2565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1262bp|location=Sequence derived from alignment at L-elsbetiae_contig13313:2463..3724- (Laminarionema elsbetiae ELsaHSoW15)
TCCTCGTCCGCCAGGCTTGACTTGTCTCGGGCCGAGAGAGCGCTGGTGGA
GGTGACCGCCCAGCGCGACGAGGCCCTCGAGCTGCTGGACGCGGCGAGGC
ACGAGAACGCGAGGCTCAGCGACGAGCTGGACCGAGCCCGATCGTACAAG
GCTCTGTACGCCGCTGCCCGCCACGTGCGTCTGTTTGTTTTTGTTTGCGC
GGGCTGCGCGTATATATATATGTATGGATGTATGTATGTATATGAACGGG
TATGTAGGGTAGAAGATGTGTACGAACGGTCTATGTAGACTTGAAATAGA
TGTGTTTTTTTTTGTTGTTGAAGAGGAGTGGTGTGCCGTCGTTTGCCTGC
CTGCAAGCCTGCCTGCAAGCCTGCCTGCCTGCCTGCCGGCGTCTGCGTTG
CTTTCCTTGCTGTGTGTGTCTTGTTCTGGTGCTTGGCTCCTTTCGGCCGC
CTTGGCTGCTGCTCCCCCCGTACCTTCCGTTGACTCTCTCTGTACACGTG
GTCGGTCATACATGCGAAGTATTATATTTTGAAAGCTTCTTGTCGACCAT
GGTACATACGTATCTGCAGCAGTACATAGCTTGCATGGCCTTGGATGTTC
TTCTAGAGGAGCACAAGGCTTGCAGACACCCTCAAGTCGTTGCGAGCCGT
GGGCAGACTTGACCCGCGAGTCAACGGATGCCACCACGGGCTTGATTTTT
GTCGCCTGGGGGGGGGGGGGGCTCTAGTCCGACACGGCCCCCGCCGAGCA
ATGCAATCAGCTCTCCACCATGCGGTATGTCGGTACACACGTGTAAACAA
ACTTCACAAGTATAGGGTCGTGAATGCTGCCCCCGTCTGTCCTCATTCAA
CGTGGGCGGCTTCTTTGTTTGTCTGTATGTGCGTTCTCCCTGTCTCTCTG
TGTCTCTCTCTCCCTTTCTGTCTCTTTCCCTCTCTCTCTCGCTCTCTCTG
TGTGTGTGTCTCTCTGTCTCTCTATCTCTTTCTTTCTATCTCTCTCTCTC
CCTCTTTCTCTCTCTCTGCGCGTGTGCGGGGGCAGGAGCACAAGGGTATG
AAGGCCTCCTTGGCGGCCTCGACCCAGATCTGCATGGGCCAGCAGAAACT
CATTCAGATGCTGCAACAGGCTTCCTCGGCGCCCCCCACCCACGCCCTCG
ACCCGGACGAGCTACTCGCCGGCCCGGGCGGCGGCGGCGGCGGTCTCACA
CCCCCGGCGCCGCCATCTCCGCTCCTGCAAACAGGAGGAAGGAGGGGAAG
AACCTTGGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13313:2463..3724-

>mRNA_L-elsbetiae_contig13313.2565.1 ID=mRNA_L-elsbetiae_contig13313.2565.1|Name=mRNA_L-elsbetiae_contig13313.2565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig13313:2463..3724- (Laminarionema elsbetiae ELsaHSoW15)
TCCTCGTCCGCCAGGCTTGACTTGTCTCGGGCCGAGAGAGCGCTGGTGGA
GGTGACCGCCCAGCGCGACGAGGCCCTCGAGCTGCTGGACGCGGCGAGGC
ACGAGAACGCGAGGCTCAGCGACGAGCTGGACCGAGCCCGATCGTACAAG
GCTCTGTACGCCGCTGCCCGCCACTCCTCGTCCGCCAGGCTTGACTTGTC
TCGGGCCGAGAGAGCGCTGGTGGAGGTGACCGCCCAGCGCGACGAGGCCC
TCGAGCTGCTGGACGCGGCGAGGCACGAGAACGCGAGGCTCAGCGACGAG
CTGGACCGAGCCCGATCGTACAAGGCTCTGTACGCCGCTGCCCGCCACGA
GCACAAGGGTATGAAGGCCTCCTTGGCGGCCTCGACCCAGATCTGCATGG
GCCAGCAGAAACTCATTCAGATGCTGCAACAGGCTTCCTCGGCGCCCCCC
ACCCACGCCCTCGACCCGGACGAGCTACTCGCCGGCCCGGGCGGCGGCGG
CGGCGGTCTCACACCCCCGGCGCCGCCATCTCCGCTCCTGCAAACAGGAG
GAAGGAGGGGAAGAACCTTGGGGGAGCACAAGGGTATGAAGGCCTCCTTG
GCGGCCTCGACCCAGATCTGCATGGGCCAGCAGAAACTCATTCAGATGCT
GCAACAGGCTTCCTCGGCGCCCCCCACCCACGCCCTCGACCCGGACGAGC
TACTCGCCGGCCCGGGCGGCGGCGGCGGCGGTCTCACACCCCCGGCGCCG
CCATCTCCGCTCCTGCAAACAGGAGGAAGGAGGGGAAGAACCTTGGGG
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