mRNA_L-elsbetiae_contig133.2555.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig133.2555.1
Unique NamemRNA_L-elsbetiae_contig133.2555.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig133.2555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig133contigL-elsbetiae_contig133:33191..33859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_003430.1
Exons1
Model size669
Cds size669
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.4608712-CDS-L-elsbetiae_contig133:33190..338591622815505.4608712-CDS-L-elsbetiae_contig133:33190..33859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig133 33191..33859 -
1691682931.1814933-CDS-L-elsbetiae_contig133:33190..338591691682931.1814933-CDS-L-elsbetiae_contig133:33190..33859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig133 33191..33859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig133.2555.1prot_L-elsbetiae_contig133.2555.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig133 33191..33859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig133.2555.1

>prot_L-elsbetiae_contig133.2555.1 ID=prot_L-elsbetiae_contig133.2555.1|Name=mRNA_L-elsbetiae_contig133.2555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
MYVGAELQDSAEPSPDHDIVVLARPSSDAAGCRLPKTAVIFREPGKVAFQ
LELPLNASLSNIKAALLSAARSSRREQRNGNGVAEEVARMATADEHDARD
CTLVVGGKKMSNSYLLGDYFLMKSTMGRTPTILVLWHPLRQEPPEATAAA
TRLLRFSLSPVASLAVAASVYLMVESREAHKCRVINRCLRSRRSVRRRCK
GAARFSGLKRGARCGQGVRSLL*
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mRNA from alignment at L-elsbetiae_contig133:33191..33859-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig133.2555.1 ID=mRNA_L-elsbetiae_contig133.2555.1|Name=mRNA_L-elsbetiae_contig133.2555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=669bp|location=Sequence derived from alignment at L-elsbetiae_contig133:33191..33859- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTAGGTGCGGAACTACAGGACAGCGCTGAGCCGAGCCCCGATCA
CGACATCGTCGTGCTTGCGCGGCCGAGTAGCGACGCCGCAGGCTGCCGTT
TGCCCAAGACTGCCGTGATATTCAGAGAGCCGGGGAAGGTCGCGTTCCAG
CTCGAGCTGCCGCTCAACGCTTCCCTCTCCAATATCAAAGCGGCGCTGCT
TTCCGCTGCGAGGTCGTCTAGACGAGAACAAAGAAACGGAAACGGGGTGG
CCGAGGAGGTGGCTAGGATGGCGACAGCAGATGAACACGATGCTCGCGAC
TGCACACTGGTCGTAGGGGGGAAGAAGATGTCAAATTCTTACCTCTTGGG
CGACTACTTCTTGATGAAAAGTACGATGGGAAGAACGCCAACCATCCTAG
TCCTTTGGCACCCGCTTCGGCAAGAACCCCCCGAGGCTACTGCCGCGGCG
ACACGCCTCCTGCGATTCAGTCTATCCCCCGTTGCTAGCCTAGCCGTGGC
TGCGTCTGTTTACTTGATGGTTGAGTCGCGGGAAGCACACAAGTGCAGGG
TGATTAATAGATGCTTGAGATCCAGACGCTCAGTAAGACGCCGATGCAAA
GGAGCCGCTAGGTTTTCAGGGCTAAAAAGGGGAGCTCGGTGCGGCCAGGG
GGTTCGATCGCTGTTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig133:33191..33859-

>mRNA_L-elsbetiae_contig133.2555.1 ID=mRNA_L-elsbetiae_contig133.2555.1|Name=mRNA_L-elsbetiae_contig133.2555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig133:33191..33859- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTAGGTGCGGAACTACAGGACAGCGCTGAGCCGAGCCCCGATCA
CGACATCGTCGTGCTTGCGCGGCCGAGTAGCGACGCCGCAGGCTGCCGTT
TGCCCAAGACTGCCGTGATATTCAGAGAGCCGGGGAAGGTCGCGTTCCAG
CTCGAGCTGCCGCTCAACGCTTCCCTCTCCAATATCAAAGCGGCGCTGCT
TTCCGCTGCGAGGTCGTCTAGACGAGAACAAAGAAACGGAAACGGGGTGG
CCGAGGAGGTGGCTAGGATGGCGACAGCAGATGAACACGATGCTCGCGAC
TGCACACTGGTCGTAGGGGGGAAGAAGATGTCAAATTCTTACCTCTTGGG
CGACTACTTCTTGATGAAAAGTACGATGGGAAGAACGCCAACCATCCTAG
TCCTTTGGCACCCGCTTCGGCAAGAACCCCCCGAGGCTACTGCCGCGGCG
ACACGCCTCCTGCGATTCAGTCTATCCCCCGTTGCTAGCCTAGCCGTGGC
TGCGTCTGTTTACTTGATGGTTGAGTCGCGGGAAGCACACAAGTGCAGGG
TGATTAATAGATGCTTGAGATCCAGACGCTCAGTAAGACGCCGATGCAAA
GGAGCCGCTAGGTTTTCAGGGCTAAAAAGGGGAGCTCGGTGCGGCCAGGG
GGTTCGATCGCTGTTGTGAATGTATGTAGGTGCGGAACTACAGGACAGCG
CTGAGCCGAGCCCCGATCACGACATCGTCGTGCTTGCGCGGCCGAGTAGC
GACGCCGCAGGCTGCCGTTTGCCCAAGACTGCCGTGATATTCAGAGAGCC
GGGGAAGGTCGCGTTCCAGCTCGAGCTGCCGCTCAACGCTTCCCTCTCCA
ATATCAAAGCGGCGCTGCTTTCCGCTGCGAGGTCGTCTAGACGAGAACAA
AGAAACGGAAACGGGGTGGCCGAGGAGGTGGCTAGGATGGCGACAGCAGA
TGAACACGATGCTCGCGACTGCACACTGGTCGTAGGGGGGAAGAAGATGT
CAAATTCTTACCTCTTGGGCGACTACTTCTTGATGAAAAGTACGATGGGA
AGAACGCCAACCATCCTAGTCCTTTGGCACCCGCTTCGGCAAGAACCCCC
CGAGGCTACTGCCGCGGCGACACGCCTCCTGCGATTCAGTCTATCCCCCG
TTGCTAGCCTAGCCGTGGCTGCGTCTGTTTACTTGATGGTTGAGTCGCGG
GAAGCACACAAGTGCAGGGTGATTAATAGATGCTTGAGATCCAGACGCTC
AGTAAGACGCCGATGCAAAGGAGCCGCTAGGTTTTCAGGGCTAAAAAGGG
GAGCTCGGTGCGGCCAGGGGGTTCGATCGCTGTTGTGA
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