mRNA_L-elsbetiae_contig13284.2548.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13284.2548.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI) HSP 1 Score: 300 bits (769), Expect = 8.940e-96 Identity = 161/309 (52.10%), Postives = 192/309 (62.14%), Query Frame = 1 Query: 1 LRPSRPSCPYIIPTEEEADARAR------DPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSGLRDKEHPYYTPGLFECVMALPPVIGCEAAYQFPTDI-------------------DLCQNRGEGADELATVEEEEERARNQQEV-------------AGNLVVHVRSGDAFHNPVHHGLGQYYLRAIKDHNWRRVDIVTNGNE--YHALNPVVPALEAKVADGELPANIHFHKVRPNSDSVWS 807 + P SCPY I EEE R+ + S GNVVV+ D +Y RLGNRF ++ SLSLG+CCKS+LVSLPPKD LAPG FN G GPR FDFS APDVEGF++ SC I WGGT+AFHL GLRD+ HPYYTPGLF C+ LP +IGCEAAY FPTD+ D+ + + A + EE R E AGNLV+HVRSGD F +P H G GQYY++AI+D W RVD+VTNG E HA+NP+VPALEAKVA G+LP NIHFHK R + + S Sbjct: 139 IAPFSSSCPYAILAEEEGHERSDRGGDGGNTSAPGNVVVVTDFNYCRLGNRFLSMGRSLSLGYCCKSRLVSLPPKDDQLAPGRFNDGTPGPRNFDFSSAPDVEGFDSSSCPPEIKWGGTQAFHLEGLRDEGHPYYTPGLFTCIKELPWIIGCEAAYFFPTDMAVPMCPLDETAEGGNKNVRDISEKPKDDAPGIQLDWEESGHGREATEQXXXXXXXXXXXGSAGNLVMHVRSGDIFVSPAHPGYGQYYVQAIQDQQWDRVDVVTNGIEDKNHAINPIVPALEAKVAKGQLPGNIHFHKNRTMEEDLLS 447
BLAST of mRNA_L-elsbetiae_contig13284.2548.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE) HSP 1 Score: 295 bits (755), Expect = 1.290e-93 Identity = 163/304 (53.62%), Postives = 191/304 (62.83%), Query Frame = 1 Query: 7 PSRPSCPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSGLRDKEHPYYTPGLFECVMALPPVIGCEAAYQFPTD--IDLCQ-----NRGEGADELATVEEEE------------ERARNQQEV--------------------AGNLVVHVRSGDAFHNPVHHGLGQ----YYLRAIKDHNWRRVDIVTNG--NEYHALNPVVPALEAKVADGELPANIHFHKVR 783 P SCPY IP+EEEA R+ + S GNVVV+ D +Y RLGNRF ++S SLSLG+CCKS+L+SLPPKD LAPG FN GI GPR FDFS APDVEGF+ SC I WGGT AFHL GLRD+ HPYYTP LFEC+ LP + GCEAAY FP D +D+C R + V E+ ER + ++ AGNLVVHVRSGD F P H GQ YY+RAI+D W RVD+VT+G +E HA+NPVVPALEAKVA+GEL NIHFHK R Sbjct: 142 PFSSSCPYAIPSEEEARERSGNTSAPGNVVVVTDFNYCRLGNRFTSMSRSLSLGYCCKSRLLSLPPKDEQLAPGRFNEGIPGPRNFDFSSAPDVEGFDYSSCPPEITWGGTNAFHLQGLRDEGHPYYTPELFECIKELPRIAGCEAAYFFPKDMAVDMCPLDETAERDHNNSNVRDVSEKPRDDAPGVRLDWGERGQGREATXXXXXXXXXXXXXXXXXEGSAGNLVVHVRSGDIFVRP-HPDYGQPPLQYYVRAIQDQEWDRVDVVTDGIVDETHAINPVVPALEAKVAEGELAGNIHFHKNR 444
BLAST of mRNA_L-elsbetiae_contig13284.2548.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI) HSP 1 Score: 275 bits (704), Expect = 2.820e-86 Identity = 149/291 (51.20%), Postives = 177/291 (60.82%), Query Frame = 1 Query: 16 PSCPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSGLRDKEHPYYTPGLFECVMALPPVIGCEAAYQFPTDIDLC------------QNRGEGAD---------ELATVEEEEERARNQQEVAGNLVVHVRSGDAFHNPVHHGLGQ----YYLRAIKDHNWRRVDIVTNGN--EYHALNPVVPALEAKVADGELPANIHFHKVRPNSDSVWS 807 P CPYI+ T E R RDP+I GNV+ + D +GRLGNRF A+ +L LG+CCKSKLVSLP KD LAPGIF G GPR +DF+ APDVEGF+A SC A I WGG EAFHL GL + HPYY+P L CV +P + GCEAAY FP +D+C + RG GA L EEEE R N LV+HVRSGD F +P G GQ YY+RAIK W RVDIVTNG + + +NPV+PALE A+GEL NI+FHK R + S Sbjct: 122 PDCPYILRTPGER-LRMRDPAIPGNVLTINDFRFGRLGNRFWALGVNLKLGYCCKSKLVSLPAKDDTLAPGIFGEGTPGPRWYDFTNAPDVEGFDASSCPADITWGGREAFHLLGLDNPSHPYYSPNLSTCVETVPRLTGCEAAYFFPMGVDVCLSDRTATGDVVHEQRGNGASGRSGPGVKKNLVGSEEEEGRPAN------TLVIHVRSGDIFVDPAAPGYGQPPLQYYVRAIKHQKWDRVDIVTNGRTKKMNVMNPVIPALEVMFAEGELTGNIYFHKDRTMEEDFLS 405
BLAST of mRNA_L-elsbetiae_contig13284.2548.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI) HSP 1 Score: 225 bits (573), Expect = 5.850e-68 Identity = 120/266 (45.11%), Postives = 156/266 (58.65%), Query Frame = 1 Query: 22 CPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSGLRDKEHPYYTPGLFECVMALPPVIGCEAAYQFPTDIDLCQNRGEGADELATVEEEEERARNQQEVAGNLVVHVRSGDAFHNPVHHGLGQ----YYLRAIKDHNWRRVDIVTNGNEYHALNPVVPALEAKVADGELPANIHFHKVRPNSDSVWS 807 C Y IP + A + D +I GNVV + L +GR GNRF A+ +L+LG+CCK+K V LPPKD VLAPGIFN G GPR FDFS APDV+G + C I W A ++GL + E Y P + +C+ P ++GCEAAY FP DI +C + + L RN AGNLV+HVRSGD F + V GQ +YL ++D W R+D+VTNG + +NPVVPAL A A G LP N++FH R + + S Sbjct: 59 CTYAIPNAKVARKQRHDSTIEGNVVKVTHLQFGRTGNRFMAVYRNLALGYCCKAKQVWLPPKDDVLAPGIFNEGTPGPRWFDFSSAPDVDGVDLGRCPIDIIWENRGAMQMAGLDNPERNKYLPHIRDCMAKAPRLLGCEAAYYFPQDIAVCPRKKKPFLALGD--------RNPPGGAGNLVLHVRSGDIFFDRVVPYKGQPPLQFYLLLMQDQPWDRIDVVTNGQNWDNVNPVVPALMAMRATGALPDNVYFHTERSMGEDLQS 316
BLAST of mRNA_L-elsbetiae_contig13284.2548.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE) HSP 1 Score: 191 bits (485), Expect = 1.100e-53 Identity = 85/152 (55.92%), Postives = 108/152 (71.05%), Query Frame = 1 Query: 22 CPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSGLRDKEHPYYTPGLFECVMALPPVIGCEAAYQFPTDIDLC 477 CPY+I T EEA +R +D S+ GNVV +E L + R GN F + +L+LG+CCKSK+V LPPKD VLAPG+FN G GPR FDFS APDV+GF++ +C A I W G AFH+ L EH ++TPGL EC+ P ++ CEAAY FP D+DLC Sbjct: 94 CPYVIDTAEEAISRIKDKSLPGNVVKVEHLTFCRTGNHFSSFFRNLALGYCCKSKVVWLPPKDDVLAPGVFNQGTPGPRWFDFSSAPDVDGFDSSACSADITWAGQRAFHMHQLDSPEHEFHTPGLKECIARAPRLLACEAAYYFPKDVDLC 245
BLAST of mRNA_L-elsbetiae_contig13284.2548.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 5.410e-19 Identity = 85/280 (30.36%), Postives = 120/280 (42.86%), Query Frame = 1 Query: 22 CPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*G--ISGPRRFDFSRA-PDVEGFEALS-----CHASIAWGGTEAFHLSGLRDKEHPYYTPGLFECVMALPPVIGCEAAYQFPTDIDL---CQNRGEGADELATVEEEEERARNQQEVAGNLVVHVRSGDAFHNPVHHGLG---------QYYLRAIKDHNWRRVDIVTNGNEYHALNPVVPALEAKVADGELPANIHFHKVRPNSDSV 801 CP + + +A+A + + N + L GR GN F IS L++GFCC+S+L++LP D + PG G +G R FDFSR P GFE L C + G AF + + L C+ + + GCE AY +DL C + G +++ AG+LVVH+RSGD F NP G QYYL + + +W V +T A+NP LE G L N+ K R + V Sbjct: 89 CPQAL-SRSQAEAALDGGNSTSNTITLLSFGSGRSGNHFLMISSYLAMGFCCRSRLLTLPEVDTAM-PGDDEGGGFKAGERWFDFSRVTPPWPGFEQLGDNPEVCRPQMEDGADNAFGYEHIHSR--------LLRCMNRVY-LRGCEKAY-LGKMVDLEGFCPKQEPG----------------KRKGAGSLVVHIRSGDIF-NPNEEGRRRTEFGQPPLQYYLHVLGEKDWDNVTFLTAAWNQKAINPTFSILEVMAKAGTLGDNVRLLKNRSLLEDV 339
BLAST of mRNA_L-elsbetiae_contig13284.2548.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 4.830e-12 Identity = 72/224 (32.14%), Postives = 96/224 (42.86%), Query Frame = 1 Query: 163 LGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRA----PDVE--GFEALSCHASIAWGGTEAFHLSGLRDKEHPYYTPGLFECVMALPPVIGCEAAYQFP-TDI-DLCQNRGEGADELATVEEEEERARNQQEVAGNLVVHVRSGDAFHNPV-----HHGLGQ----YYLRAIKDHNWRRVDIVTNGNEYHALNPVVPALEAKVADGELPANIHFHKVR 783 +GFCC+S+L++LP D L + N S R FDFS P+ + G + C GG +AF G D P L EC+ + + GCE AY D+ C + G +++ AG+LV H+RSGD F NP G GQ YYLR + +W V +T E ALNP LE G L N+H R Sbjct: 1 MGFCCRSRLLTLPATDDKLPDELDN-FTSARRWFDFSNVTVPWPEYQEMGDDQEVCRPETKDGGRKAF---GYEDVH-----PKLLECMNRVY-LRGCEKAYLGKLVDVGSFCPKQEPG----------------KRKGAGSLVAHIRSGDIF-NPDGEGHRRQGFGQPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLFNNR 197 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13284.2548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13284.2548.1 >prot_L-elsbetiae_contig13284.2548.1 ID=prot_L-elsbetiae_contig13284.2548.1|Name=mRNA_L-elsbetiae_contig13284.2548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp MALPPVIGCEAAYQFPTDIDLCQNRGEGADELATVEEEEERARNQQEVAGback to top mRNA from alignment at L-elsbetiae_contig13284:3008..5130+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13284.2548.1 ID=mRNA_L-elsbetiae_contig13284.2548.1|Name=mRNA_L-elsbetiae_contig13284.2548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2123bp|location=Sequence derived from alignment at L-elsbetiae_contig13284:3008..5130+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13284:3008..5130+ >mRNA_L-elsbetiae_contig13284.2548.1 ID=mRNA_L-elsbetiae_contig13284.2548.1|Name=mRNA_L-elsbetiae_contig13284.2548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig13284:3008..5130+ (Laminarionema elsbetiae ELsaHSoW15)back to top |