mRNA_L-elsbetiae_contig13270.2542.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13270.2542.1
Unique NamemRNA_L-elsbetiae_contig13270.2542.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: D8LJ89_ECTSI (Amidophosphoribosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ89_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.340e-18
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAGGAGL 114
            R+DNGLCKDVFQQHHM+QLRGRMGLAHCRYPTAGGAGL
Sbjct:   50 RKDNGLCKDVFQQHHMMQLRGRMGLAHCRYPTAGGAGL 87
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: A0A1Z5JJP8_FISSO (Amidophosphoribosyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJP8_FISSO)

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-11
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL KDVF QHHMV+LRG +G+ HCRYPTAG
Sbjct:   48 RKDNGLVKDVFHQHHMVELRGHLGIGHCRYPTAG 81
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: A0A7S1VCQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VCQ5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.880e-11
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL +DVF  HHM+QL G +GL HCRYPTAG
Sbjct:   29 RKDNGLVRDVFSTHHMIQLSGHVGLGHCRYPTAG 62
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: A0A7S4HRU6_9STRA (Amidophosphoribosyltransferase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRU6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.900e-11
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL KDVFQ HHM +LRG +GL HCRYPTAG
Sbjct:   33 RKDNGLVKDVFQTHHMAELRGNVGLGHCRYPTAG 66
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: A0A7S0BVL2_9STRA (Amidophosphoribosyltransferase n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVL2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.710e-10
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL KDVF  HHM +LRG +GL HCRYPTAG
Sbjct:   48 RKDNGLVKDVFDDHHMAELRGNIGLGHCRYPTAG 81
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: A0A7S2VHN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VHN8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.880e-10
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL KDVFQ HHM+ LRG  GL H RYPTAG
Sbjct:   48 RKDNGLVKDVFQTHHMIDLRGNFGLGHVRYPTAG 81
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: A0A8K1C2R6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2R6_PYTOL)

HSP 1 Score: 62.4 bits (150), Expect = 3.190e-10
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL +DVF+Q+HMV LRG MG+ HCRYPTAG
Sbjct:   73 RKDNGLVRDVFKQNHMVNLRGPMGIGHCRYPTAG 106
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: B7GER7_PHATC (Amidophosphoribosyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GER7_PHATC)

HSP 1 Score: 62.0 bits (149), Expect = 4.360e-10
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL KDVFQ HHM++LRG MG+ H RYPTAG
Sbjct:   48 RKDNGLVKDVFQAHHMLELRGNMGIGHVRYPTAG 81
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: A0A024GSR9_9STRA (Amidophosphoribosyltransferase n=4 Tax=Albugo TaxID=65356 RepID=A0A024GSR9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.370e-10
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL +DVF+Q+HM+ LRG MG+ HCRYPTAG
Sbjct:   48 RKDNGLVRDVFRQNHMINLRGPMGIGHCRYPTAG 81
[Close]
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Match: A0A2D4BMN4_PYTIN (Amidophosphoribosyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMN4_PYTIN)

HSP 1 Score: 62.0 bits (149), Expect = 4.370e-10
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAG 102
            R+DNGL +DVF+Q+HM+ LRG MG+ HCRYPTAG
Sbjct:   48 RKDNGLVRDVFKQNHMINLRGPMGIGHCRYPTAG 81
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13270.2542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ89_ECTSI4.340e-1894.74Amidophosphoribosyltransferase n=2 Tax=Ectocarpus ... [more]
A0A1Z5JJP8_FISSO1.400e-1176.47Amidophosphoribosyltransferase n=2 Tax=Fistulifera... [more]
A0A7S1VCQ5_9STRA3.880e-1170.59Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S4HRU6_9STRA4.900e-1176.47Amidophosphoribosyltransferase (Fragment) n=1 Tax=... [more]
A0A7S0BVL2_9STRA1.710e-1073.53Amidophosphoribosyltransferase n=2 Tax=Proboscia i... [more]
A0A7S2VHN8_9STRA1.880e-1073.53Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A8K1C2R6_PYTOL3.190e-1073.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
B7GER7_PHATC4.360e-1073.53Amidophosphoribosyltransferase n=2 Tax=Phaeodactyl... [more]
A0A024GSR9_9STRA4.370e-1070.59Amidophosphoribosyltransferase n=4 Tax=Albugo TaxI... [more]
A0A2D4BMN4_PYTIN4.370e-1070.59Amidophosphoribosyltransferase n=1 Tax=Pythium ins... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13270contigL-elsbetiae_contig13270:757..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue8.4e-15
Seed eggNOG ortholog2880.D8LJ89
Preferred nameADE4
KEGG rclassRC00010,RC02724,RC02752
KEGG koko:K00764
KEGG ReactionR01072
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004044,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009113,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046083,GO:0046112,GO:0046148,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.amidophosphoribosyltransferase activity
EggNOG OGsCOG0034@1,KOG0572@2759
EC2.4.2.14
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Ec32 ortholog descriptionAmidophosphoribosyltransferase
Ec32 orthologEc-02_005190.1
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.942129-CDS-L-elsbetiae_contig13270:756..8821622815503.942129-CDS-L-elsbetiae_contig13270:756..882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13270 757..882 +
1691682930.4318626-CDS-L-elsbetiae_contig13270:756..8821691682930.4318626-CDS-L-elsbetiae_contig13270:756..882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13270 757..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13270.2542.1prot_L-elsbetiae_contig13270.2542.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13270 757..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13270.2542.1

>prot_L-elsbetiae_contig13270.2542.1 ID=prot_L-elsbetiae_contig13270.2542.1|Name=mRNA_L-elsbetiae_contig13270.2542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
RQDNGLCKDVFQQHHMVQLRGRMGLAHCRYPTAGGAGLQAR*
back to top

mRNA from alignment at L-elsbetiae_contig13270:757..882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13270.2542.1 ID=mRNA_L-elsbetiae_contig13270.2542.1|Name=mRNA_L-elsbetiae_contig13270.2542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=126bp|location=Sequence derived from alignment at L-elsbetiae_contig13270:757..882+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGGACAACGGGCTCTGCAAGGATGTCTTCCAGCAGCACCACATGGT
GCAGCTCAGAGGGAGAATGGGCCTGGCCCACTGCCGATACCCGACAGCCG
GGGGAGCCGGTCTGCAGGCAAGATAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13270:757..882+

>mRNA_L-elsbetiae_contig13270.2542.1 ID=mRNA_L-elsbetiae_contig13270.2542.1|Name=mRNA_L-elsbetiae_contig13270.2542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig13270:757..882+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGGACAACGGGCTCTGCAAGGATGTCTTCCAGCAGCACCACATGGT
GCAGCTCAGAGGGAGAATGGGCCTGGCCCACTGCCGATACCCGACAGCCG
GGGGAGCCGGTCTGCAGGCAAGATAACGGCAGGACAACGGGCTCTGCAAG
GATGTCTTCCAGCAGCACCACATGGTGCAGCTCAGAGGGAGAATGGGCCT
GGCCCACTGCCGATACCCGACAGCCGGGGGAGCCGGTCTGCAGGCAAGAT
AA
back to top