mRNA_L-elsbetiae_contig1327.2539.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1327.2539.1
Unique NamemRNA_L-elsbetiae_contig1327.2539.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1327.2539.1 vs. uniprot
Match: A0A6H5JE33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE33_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 6.840e-83
Identity = 127/181 (70.17%), Postives = 151/181 (83.43%), Query Frame = 2 
Query:   17 MFVWVRFGEVERPERRCFCMDVTCDNLLDAVKQTVEEETARLRLRWEAELAVSLREAIFEEQQLGAKAGRFESLHEPVPPDISSGLELASFRRAATEGKISHLQGSMANFKGLAHSSIDLIEPSSGALQKLANNPRKKAVGLLRAGNTYEAARLDKNSSGASTSTPLMFSLSAAVISQTAP 559
            MFVW+RFGEVE PE+RCFC+DVTCDNLLDAVKQTVE+ET     R E EL + LREA+ EEQQL AKA RF+SL +P PPDISS LELA F++ +TEGK++ LQ S+ NFKGL H ++DL++PS+ ALQKLA++PRKKAVGLLRAGNTYEAARLDKNS+G  TSTPL+FSLS+ V S  AP
Sbjct:    1 MFVWIRFGEVESPEKRCFCIDVTCDNLLDAVKQTVEQETVGAMKRREVELVLKLREAVLEEQQLAAKAARFDSLRQPTPPDISSALELARFQKTSTEGKLTALQASLVNFKGLGHITVDLMDPSTAALQKLASHPRKKAVGLLRAGNTYEAARLDKNSTGGFTSTPLVFSLSSPVTSHPAP 181
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1327.2539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JE33_9PHAE6.840e-8370.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1327contigL-elsbetiae_contig1327:5625..8109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_010810.1
Exons5
Model size942
Cds size549
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.626454-UTR-L-elsbetiae_contig1327:5624..60011622815503.626454-UTR-L-elsbetiae_contig1327:5624..6001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1327 5625..6001 -
1691682930.2248979-UTR-L-elsbetiae_contig1327:5624..60011691682930.2248979-UTR-L-elsbetiae_contig1327:5624..6001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1327 5625..6001 -
1622815503.7019787-UTR-L-elsbetiae_contig1327:8093..81091622815503.7019787-UTR-L-elsbetiae_contig1327:8093..8109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1327 8094..8109 -
1691682930.2872658-UTR-L-elsbetiae_contig1327:8093..81091691682930.2872658-UTR-L-elsbetiae_contig1327:8093..8109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1327 8094..8109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.6372907-CDS-L-elsbetiae_contig1327:6001..60871622815503.6372907-CDS-L-elsbetiae_contig1327:6001..6087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 6002..6087 -
1691682930.238631-CDS-L-elsbetiae_contig1327:6001..60871691682930.238631-CDS-L-elsbetiae_contig1327:6001..6087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 6002..6087 -
1622815503.6518984-CDS-L-elsbetiae_contig1327:6541..66701622815503.6518984-CDS-L-elsbetiae_contig1327:6541..6670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 6542..6670 -
1691682930.2479641-CDS-L-elsbetiae_contig1327:6541..66701691682930.2479641-CDS-L-elsbetiae_contig1327:6541..6670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 6542..6670 -
1622815503.6679122-CDS-L-elsbetiae_contig1327:7093..72101622815503.6679122-CDS-L-elsbetiae_contig1327:7093..7210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 7094..7210 -
1691682930.2613297-CDS-L-elsbetiae_contig1327:7093..72101691682930.2613297-CDS-L-elsbetiae_contig1327:7093..7210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 7094..7210 -
1622815503.6792924-CDS-L-elsbetiae_contig1327:7696..78851622815503.6792924-CDS-L-elsbetiae_contig1327:7696..7885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 7697..7885 -
1691682930.2712085-CDS-L-elsbetiae_contig1327:7696..78851691682930.2712085-CDS-L-elsbetiae_contig1327:7696..7885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 7697..7885 -
1622815503.6921773-CDS-L-elsbetiae_contig1327:8065..80931622815503.6921773-CDS-L-elsbetiae_contig1327:8065..8093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 8066..8093 -
1691682930.2792697-CDS-L-elsbetiae_contig1327:8065..80931691682930.2792697-CDS-L-elsbetiae_contig1327:8065..8093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1327 8066..8093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1327.2539.1prot_L-elsbetiae_contig1327.2539.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1327 6002..8093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1327.2539.1

>prot_L-elsbetiae_contig1327.2539.1 ID=prot_L-elsbetiae_contig1327.2539.1|Name=mRNA_L-elsbetiae_contig1327.2539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MFVWVRFGEVERPERRCFCMDVTCDNLLDAVKQTVEEETARLRLRWEAEL
AVSLREAIFEEQQLGAKAGRFESLHEPVPPDISSGLELASFRRAATEGKI
SHLQGSMANFKGLAHSSIDLIEPSSGALQKLANNPRKKAVGLLRAGNTYE
AARLDKNSSGASTSTPLMFSLSAAVISQTAPT*
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mRNA from alignment at L-elsbetiae_contig1327:5625..8109-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1327.2539.1 ID=mRNA_L-elsbetiae_contig1327.2539.1|Name=mRNA_L-elsbetiae_contig1327.2539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2485bp|location=Sequence derived from alignment at L-elsbetiae_contig1327:5625..8109- (Laminarionema elsbetiae ELsaHSoW15)
CAACTAAACACTGACTATGTTCGTGTGGGTCAGGTTTGGTGAAGGTTAGT
GCCTCGGTAATTATTTGAAGACATGAGATGAGATGATCCAGATTCGCGTA
CAATGCACTTTGTTGATAATGGGGTAGATTTAACAAAGTATAGAACTCGC
TCGCTCCACCGACTTGCCGTTACAATCCTCCGTGTTGTGGGTCCGGCGCG
CCTTCGACATCGCACGCTCTGCAGTTGAGAGACCAGAGAGGAGATGTTTT
TGTATGGATGTGACGTGCGACAACCTCTTGGATGCGGTTAAGCAAACAGT
CGAGGAGGAAACTGCGAGGCTAAGGTTACGATGGGAGGCTGAACTCGCTG
TAAGTCTTCGCGAGGCTATTTTTGAGGAGCAGCAGCTGGGGGCGAAGGCT
GGAAGATTCGAATGTGAGTTGAAGTGGAGTCCAACCATGGTGAAGCATAG
ACGCATATCACCGTCTGTCAAATCGAAACAAAACGAAGTATCTAGACTAG
AGACGTGTGGATGACCGGTACGTCTCAACGCACGTTGTTTACTGAAATGA
CCACCCAGTTCTCCACCTCCTCGTGAGCGACGCTGTGCTTTGTTCTGCTC
CAACATCCGTTTCCGACCCTGTCACCGCCCACTGACGCTCCCGCAAGATC
TCAACAAGAAATGGATTATTTTTCAGTTAGGTTGAGGGAATATTGCACAC
ATATATGCACAGACAAAATAATGAAAAACCTGATGAGGAACCCTATTGGA
CACTTCTTCGAAGTTTTTGAACACGCATGCAGGTATTATGCAGTCGTAGA
TATGTGTAGATATCTATGCGAGCATGTGATGTATGTACATAGTATGCGTT
CACGTGTAAACTGCTTGACACCGCCGTATGCTGCCACGATGCCCCTAAGC
GCTCCACGAACCAGTCCCACCGGATATATCATCGGGACTCGAGTTGGCGA
GTTTTCGAAGAGCGGCGACTGAGGGGAAGATATCACACCTCCAAGGCAGT
ATGGCCAACTTCAAAGGTACGGCCATCGCATCGGCACAGCACATCGGAAC
AGCTCGCTGCCATCTGTGAATAGTTAGTGTTCTATAAGAACGCACCAGCT
ATTCCTAAGACTCCCATTAAAAAACTGCTGTCATCTGAACTGCCACACCA
GTTGGAAACAGTAGTGCGGGGACGGGGGGGGGGGGGGGTTCCACCCTCTA
CAGAGTGAGTGCCGGCCCGCTCACAAGAATGGTCCTTTGAAGTCAGCCTG
AGAGTTAGAAAACACCAAGAATGTGCTCAGCTTAGGTGGCGAATGCCAAC
ACTAATTTCTATATATTGGGGCGGCGGTTGGCTCTGGTCTCTGGTCTCAC
GTTGGGAAGTCATACGTACATATGTAGAGCCCTGTCTCTCTCTGGTTTCT
CATGAACGGGCACGACCTTGCCGCTTACGGTGTTACCAGGCCTCGCTCAC
AGTAGCATCGATCTCATTGAGCCATCCTCGGGTGCGCTGCAGAAGCTCGC
AAACAATCCGAGGAAAAAGGCTGTCGGGCTTTTGCGGGCAGGAAATACCT
ACGAAGCCGCCCGTCTTGGTGAGGACGCCATTCATGCTTGACTAATCTGT
GCCTTACAGGCGCGCGCATCACGTGCACATCACATTCCTTCACGCTTCAT
TCACTAGATACACAGTTTTGAAGAAAGATTAGGTATAGGTAGGTTGAAGA
GTCACCTCGTTTTTCCTGGCGAGACAGAACGTCTGGGATCCCTTTCTGAA
GCGGGCCGATGGTACTATATACACACTACCAGCTGCTATAGTCTATACCG
CGTAAGCATCTGACTAAACCGATTGTGCCATTTGTTGATGACGAAACTTG
CCACGAAGAATCTCCAGGAATGATGGGAAGTATGCCCAGCGCTTCTTCTT
GCCGAAGCTTTCACGCCCGGTAGACAGAAAATTCACGCCCCTTTTCTGTG
CAATCCGTTACTACCGTCAACGCTGTTTGCATTCTTCTTGATCTGTTCTC
ACATAAACGAATCTTCTTGAAGACAAAAACTCGTCGGGAGCTTCCACGTC
GACACCGCTCATGTTTTCTTTGTCGGCGGCGGTGATATCGCAGACAGCAC
CAACGTGATGGCAGAAGGAAAGAAAGCACGCCAAGCAAAATTTTCCGGTT
TATTTAGCGTTAGTATTGTAGTGCGAAGTATACACTGCTTCCCTTATGGA
AACATCTCTGTGTATTGGGATTGGATTAAGATCGGGGACCGGGTTGGCGC
GAAATGTGTCGTGAACATGTAGTCACCAATTCAGAGTAGTATCTGGAATT
GGGGAGTTTTCCCGATAACTGTCTGAGATTTTTTTAATGTAATAGATGGT
CGAGGGCTTGTAGGTTGCACTAGGCGGCTTCCTTAGTTTTTTGTGTCAGT
GCAAGTCTCGAAGCACCGTAAAGGATTAATGTGTAGCCGTTGTAGGCCAC
TGAAAGAAAACATGAAAAAAATAGGATAGATTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1327:5625..8109-

>mRNA_L-elsbetiae_contig1327.2539.1 ID=mRNA_L-elsbetiae_contig1327.2539.1|Name=mRNA_L-elsbetiae_contig1327.2539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig1327:5625..8109- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGTGTGGGTCAGGTTTGGTGAAGATGTTCGTGTGGGTCAGGTTTG
GTGAAGTTGAGAGACCAGAGAGGAGATGTTTTTGTATGGATGTGACGTGC
GACAACCTCTTGGATGCGGTTAAGCAAACAGTCGAGGAGGAAACTGCGAG
GCTAAGGTTACGATGGGAGGCTGAACTCGCTGTAAGTCTTCGCGAGGCTA
TTTTTGAGGAGCAGCAGCTGGGGGCGAAGGCTGGAAGATTCGAATTTGAG
AGACCAGAGAGGAGATGTTTTTGTATGGATGTGACGTGCGACAACCTCTT
GGATGCGGTTAAGCAAACAGTCGAGGAGGAAACTGCGAGGCTAAGGTTAC
GATGGGAGGCTGAACTCGCTGTAAGTCTTCGCGAGGCTATTTTTGAGGAG
CAGCAGCTGGGGGCGAAGGCTGGAAGATTCGAATCGCTCCACGAACCAGT
CCCACCGGATATATCATCGGGACTCGAGTTGGCGAGTTTTCGAAGAGCGG
CGACTGAGGGGAAGATATCACACCTCCAAGGCAGTATGGCCAACTTCAAA
GCGCTCCACGAACCAGTCCCACCGGATATATCATCGGGACTCGAGTTGGC
GAGTTTTCGAAGAGCGGCGACTGAGGGGAAGATATCACACCTCCAAGGCA
GTATGGCCAACTTCAAAGGCCTCGCTCACAGTAGCATCGATCTCATTGAG
CCATCCTCGGGTGCGCTGCAGAAGCTCGCAAACAATCCGAGGAAAAAGGC
TGTCGGGCTTTTGCGGGCAGGAAATACCTACGAAGCCGCCCGTCTTGGCC
TCGCTCACAGTAGCATCGATCTCATTGAGCCATCCTCGGGTGCGCTGCAG
AAGCTCGCAAACAATCCGAGGAAAAAGGCTGTCGGGCTTTTGCGGGCAGG
AAATACCTACGAAGCCGCCCGTCTTGACAAAAACTCGTCGGGAGCTTCCA
CGTCGACACCGCTCATGTTTTCTTTGTCGGCGGCGGTGATATCGCAGACA
GCACCAACGTGAACAAAAACTCGTCGGGAGCTTCCACGTCGACACCGCTC
ATGTTTTCTTTGTCGGCGGCGGTGATATCGCAGACAGCACCAACGTGA
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