mRNA_L-elsbetiae_contig13264.2534.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13264.2534.1
Unique NamemRNA_L-elsbetiae_contig13264.2534.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13264.2534.1 vs. uniprot
Match: D7FK94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK94_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 9.780e-7
Identity = 51/125 (40.80%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   37 MRFGSPEAFRSDLHPPPTFWSTSASNQ---TPTAFLDDGSSHA--HRTTGAHAI---FQRTAGANTICSTLR-------RRKK---LTAANPGKAACDG-VVGGRLRRGRSASRRRRRPNRGAMG 354
            M FG+P  F S +HPPP+FWSTSA+NQ   T  A  DD  +H+  HR  G       F   A A+T+CS LR       RRKK   + AA  G+    G  VGG +R     + +R RP R   G
Sbjct:    1 MSFGAPGVFESGIHPPPSFWSTSAANQAAPTTAAVADDFHTHSGGHRPQGHREYDSRFDGAATADTVCSMLRALETASDRRKKPPGMVAAGAGQGTGGGRAVGGNVR----GTVKRLRPRRNLAG 121
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BLAST of mRNA_L-elsbetiae_contig13264.2534.1 vs. uniprot
Match: A0A6H5JV24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV24_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.330e-6
Identity = 54/125 (43.20%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   37 MRFGSPEAFRSDLHPPPTFWSTSASNQT-PTAFLDDGSSHA----HRTTGAHAIFQR---TAGANTICSTLR-------RRKK---LTAANPGKAACDG-VVGGRLRRGRSASRRRRRPNRGAMG 354
            M FG+  AF S +HPPP+FWSTSA NQ  P A  DD   HA    HR  G      R    A A+T+CS LR       RRKK   +  A  GK +  G VVGG++R     S +R RP R   G
Sbjct:    1 MNFGASGAFESGIHPPPSFWSTSAVNQAVPAADADDF--HAPFGGHRPQGHREYDSRCDVAATADTVCSMLRTLENASDRRKKPPGVVEAGAGKGSGGGRVVGGKVR----GSVKRLRPRRNLAG 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13264.2534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK94_ECTSI9.780e-740.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV24_9PHAE1.330e-643.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13264contigL-elsbetiae_contig13264:1089..3443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size558
Cds size555
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13264.2534.1prot_L-elsbetiae_contig13264.2534.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13264 1091..3443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.3621714-CDS-L-elsbetiae_contig13264:1090..12201622815503.3621714-CDS-L-elsbetiae_contig13264:1090..1220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13264 1091..1220 -
1691682930.0849013-CDS-L-elsbetiae_contig13264:1090..12201691682930.0849013-CDS-L-elsbetiae_contig13264:1090..1220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13264 1091..1220 -
1622815503.3758326-CDS-L-elsbetiae_contig13264:2094..24021622815503.3758326-CDS-L-elsbetiae_contig13264:2094..2402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13264 2095..2402 -
1691682930.0957277-CDS-L-elsbetiae_contig13264:2094..24021691682930.0957277-CDS-L-elsbetiae_contig13264:2094..2402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13264 2095..2402 -
1622815503.3907995-CDS-L-elsbetiae_contig13264:3326..34431622815503.3907995-CDS-L-elsbetiae_contig13264:3326..3443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13264 3327..3443 -
1691682930.105582-CDS-L-elsbetiae_contig13264:3326..34431691682930.105582-CDS-L-elsbetiae_contig13264:3326..3443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13264 3327..3443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13264.2534.1

>prot_L-elsbetiae_contig13264.2534.1 ID=prot_L-elsbetiae_contig13264.2534.1|Name=mRNA_L-elsbetiae_contig13264.2534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
SRTREKGGAHKAMRFGSPEAFRSDLHPPPTFWSTSASNQTPTAFLDDGSS
HAHRTTGAHAIFQRTAGANTICSTLRRRKKLTAANPGKAACDGVVGGRLR
RGRSASRRRRRPNRGAMGCLPRPPQSSVRGGVVSTFATKDISDRHGRSSP
QTAAPPPEPTECWGRDSSNRPYEPSPPRPPPSPFP
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mRNA from alignment at L-elsbetiae_contig13264:1089..3443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13264.2534.1 ID=mRNA_L-elsbetiae_contig13264.2534.1|Name=mRNA_L-elsbetiae_contig13264.2534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2355bp|location=Sequence derived from alignment at L-elsbetiae_contig13264:1089..3443- (Laminarionema elsbetiae ELsaHSoW15)
TCGCGCACGAGAGAGAAAGGGGGGGCGCACAAGGCCATGCGCTTTGGGTC
GCCAGAGGCGTTCAGGTCTGATTTGCACCCTCCCCCCACCTTCTGGTCCA
CGTCGGCATCGAATCAGGTATGCTCTTCCTCAACCCGAAACGGCATGTCA
CGAGGAAATCTCGCCGCTTCTACTTTCGCCGCAGCAGGCTTGCAGGCTTG
TAGGTTTTCGTATCGGCGGGAGATTTTCAACTGATCGATTGTTCCGATAT
GTACTTGGCTACTGTTTTAGCTGTCTGTTGGTACAAGGTTTGGAAAAGCC
CTTCGTGAAACATCGAAATATCTTACCGGTGCCGACACTGGCTCTATTGG
CGGAGTCTTTCGCTCTCCGCAGCTCAGAATCGGAATCGGCTATTGCCTGC
GAAACGCTGTTGTGAACATACAGGGGAGTCTCCCTACGATAGAGAGGAGA
CCCTCGAAGGGTTTCCCTGCCTAGTTGGGCTGGTTTGCGTATCGTATTCG
CAACACGGCTGCTTGTTCCGTTCCGGAGACGGCCAAGATACATATTGCAC
CGCATTATGTGGCATCCACAAGTAGTTTTCGGCATCGCTGTTGAGAGACG
GCGGTGCCAGTTGCTTGACATGAAGAAGAATCGTCGGTTTTGCGCGGGTA
TCTGCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTCCCCCTCCCTCTCTCT
CCCGTCTGCGCTTGTCGGCCTGTATGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTTGTCTCCCTCTCTGTCTCTCGTATATCTCCGCCTCTTATCATT
TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCCCTGGTATATCCATTC
GCGAACGCAGTCCAGGCCACAAACCTCGGGAGTATATGTAATCTTCCAGC
GAGCAGGCCTTCCGAAAACGACACCTGCTTCAACAAGCTGCGGAGGGTAT
CCGTGTAGTATGTACGACTCTGGCACTGCTAACGCCGACTCCCGACAGCC
ACACTGACGCAGAAACCCATTTCCCTCCGACACCCGCGCAGACTCCAACA
GCATTTCTCGACGACGGCTCTAGCCACGCCCACCGGACAACCGGCGCACA
CGCCATATTCCAGAGAACCGCGGGCGCAAACACCATTTGCAGCACGCTCC
GCCGCCGCAAAAAGCTGACAGCCGCCAACCCCGGTAAAGCTGCCTGCGAC
GGTGTCGTCGGCGGTAGACTCCGGCGCGGCCGTAGTGCCAGTCGAAGACG
CCGCAGGCCCAACAGGGGTGCGATGGGATGTTTGCCTCGGCCCCCGCAGA
GCTCTGTGAGGGGCGGCGTTGTTTCTACCTTTGCTACCAAGGACATCAGG
TGCGAGGGTGCATGCGGGTTCATTTGGACCGGCCATGCCAATATAATATG
GTGTTGCTCTTGATCGGGTTTCGCCATGAGAACAGGCTTTACCTCTCTCT
CTCTCCGTTTGTGTCGAGGGCCACCTTCAGCGTTTTAGGGTTACATAGCG
TTAAGGTGATATCGGAAGTCGGATACGAGGAGAGCGGAGGCACTTCTATA
TGCAACGGCTAGAACAGCGGCAATCGTCGTCGACAAAAGAAGAACACCAG
CAACAACACCAGCAGCAATACCAACAACCGCGACACCTAGGCACGGGCCT
GTCGAGGATAAGGAAGAAATGCTTTGAGACGCCGCTGTTGACTCAAACGT
ACAGACGGAAACTTTTTCCAACAAACTCCGCACTTCGTATTCAAGTAAAG
CGGTGAACAACCGACACTCGCCTAGTTCTGTTTGCATACCAAGTGCGGAG
TATATACGAAAGTGTGCACGAAGTGCTTCATATGCCGCTATTGCGCAATG
TAGGCGGTCTACCTCCGACTGGAAAGACGCATCGAACGGGAGGTGGTACA
CACGTCCTTACCTCTCACCCCCTCAGACGTGGTCTGCCTCCAGCAAGCAA
AACAAACTGTAACTCGGAGACCCTTCCCTCCCCTGCCTCCCTGCATAAGA
TCGGGTTGTTTACAGTAGTGGGGAGTCTTTAGGGCGAAGTTTTGAAAATA
AACCAGAAAAGGTGAAGTTTTGTTTCAGTGTTTTTCTCGCTTCAAGAGCC
CTCCCCCCCCGCATTAGCCAGCCAGTTTGTTCTGGCATGTTTGCCTGACC
CTGTCTTCGGGATCCCTTCGCAATGAGTCAGCTCATCTTTATACCTGCGC
GTGCTCTTCTCGCCCCCCGACAGCGATAGACACGGCCGCTCCAGCCCTCA
GACGGCGGCGCCTCCACCGGAGCCGACAGAATGCTGGGGAAGGGATAGCT
CAAATAGACCGTACGAGCCATCTCCACCGCGGCCGCCGCCGTCGCCGTTC
CCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13264:1089..3443-

>mRNA_L-elsbetiae_contig13264.2534.1 ID=mRNA_L-elsbetiae_contig13264.2534.1|Name=mRNA_L-elsbetiae_contig13264.2534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig13264:1089..3443- (Laminarionema elsbetiae ELsaHSoW15)
TCGCGCACGAGAGAGAAAGGGGGGGCGCACAAGGCCATGCGCTTTGGGTC
GCCAGAGGCGTTCAGGTCTGATTTGCACCCTCCCCCCACCTTCTGGTCCA
CGTCGGCATCGAATCAGTCGCGCACGAGAGAGAAAGGGGGGGCGCACAAG
GCCATGCGCTTTGGGTCGCCAGAGGCGTTCAGGTCTGATTTGCACCCTCC
CCCCACCTTCTGGTCCACGTCGGCATCGAATCAGACTCCAACAGCATTTC
TCGACGACGGCTCTAGCCACGCCCACCGGACAACCGGCGCACACGCCATA
TTCCAGAGAACCGCGGGCGCAAACACCATTTGCAGCACGCTCCGCCGCCG
CAAAAAGCTGACAGCCGCCAACCCCGGTAAAGCTGCCTGCGACGGTGTCG
TCGGCGGTAGACTCCGGCGCGGCCGTAGTGCCAGTCGAAGACGCCGCAGG
CCCAACAGGGGTGCGATGGGATGTTTGCCTCGGCCCCCGCAGAGCTCTGT
GAGGGGCGGCGTTGTTTCTACCTTTGCTACCAAGGACATCAGACTCCAAC
AGCATTTCTCGACGACGGCTCTAGCCACGCCCACCGGACAACCGGCGCAC
ACGCCATATTCCAGAGAACCGCGGGCGCAAACACCATTTGCAGCACGCTC
CGCCGCCGCAAAAAGCTGACAGCCGCCAACCCCGGTAAAGCTGCCTGCGA
CGGTGTCGTCGGCGGTAGACTCCGGCGCGGCCGTAGTGCCAGTCGAAGAC
GCCGCAGGCCCAACAGGGGTGCGATGGGATGTTTGCCTCGGCCCCCGCAG
AGCTCTGTGAGGGGCGGCGTTGTTTCTACCTTTGCTACCAAGGACATCAG
CGATAGACACGGCCGCTCCAGCCCTCAGACGGCGGCGCCTCCACCGGAGC
CGACAGAATGCTGGGGAAGGGATAGCTCAAATAGACCGTACGAGCCATCT
CCACCGCGGCCGCCGCCGTCGCCGTTCCCACGATAGACACGGCCGCTCCA
GCCCTCAGACGGCGGCGCCTCCACCGGAGCCGACAGAATGCTGGGGAAGG
GATAGCTCAAATAGACCGTACGAGCCATCTCCACCGCGGCCGCCGCCGTC
GCCGTTCCCA
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