mRNA_L-elsbetiae_contig13264.2535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13264.2535.1
Unique NamemRNA_L-elsbetiae_contig13264.2535.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13264.2535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13264contigL-elsbetiae_contig13264:4577..5022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13264.2535.1prot_L-elsbetiae_contig13264.2535.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13264 4670..4981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.291909-UTR-L-elsbetiae_contig13264:4576..46691622815503.291909-UTR-L-elsbetiae_contig13264:4576..4669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13264 4577..4669 +
1691682930.0522594-UTR-L-elsbetiae_contig13264:4576..46691691682930.0522594-UTR-L-elsbetiae_contig13264:4576..4669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13264 4577..4669 +
1622815503.3140566-UTR-L-elsbetiae_contig13264:4981..50221622815503.3140566-UTR-L-elsbetiae_contig13264:4981..5022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13264 4982..5022 +
1691682930.076163-UTR-L-elsbetiae_contig13264:4981..50221691682930.076163-UTR-L-elsbetiae_contig13264:4981..5022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13264 4982..5022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.3029993-CDS-L-elsbetiae_contig13264:4669..49811622815503.3029993-CDS-L-elsbetiae_contig13264:4669..4981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13264 4670..4981 +
1691682930.067393-CDS-L-elsbetiae_contig13264:4669..49811691682930.067393-CDS-L-elsbetiae_contig13264:4669..4981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13264 4670..4981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13264.2535.1

>prot_L-elsbetiae_contig13264.2535.1 ID=prot_L-elsbetiae_contig13264.2535.1|Name=mRNA_L-elsbetiae_contig13264.2535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MYVKQNSYQCVFSINTAHSGIEHEQEPLPPEFPTLPFDLHLPPLPPLYIC
IFSSRESRAFLFTCLDITPFSLFLLPSIVAPVPFGSPNTSPSTPPSPPLS
PSL*
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mRNA from alignment at L-elsbetiae_contig13264:4577..5022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13264.2535.1 ID=mRNA_L-elsbetiae_contig13264.2535.1|Name=mRNA_L-elsbetiae_contig13264.2535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=446bp|location=Sequence derived from alignment at L-elsbetiae_contig13264:4577..5022+ (Laminarionema elsbetiae ELsaHSoW15)
CATGTGTACGATGTGGAAAGGTGCCTGCCGCCGTAGCTTCTCGCCAGTCA
CGTCTGGCGGGTGTAGCCTGAACACGATAAAAATAGCTCAGGTATGTATG
TAAAACAAAACTCATACCAGTGCGTGTTTTCCATCAATACCGCGCATTCT
GGAATCGAGCACGAACAAGAACCTCTCCCCCCCGAATTTCCGACTCTCCC
GTTCGATCTACATCTCCCCCCTCTCCCCCCCCTATATATTTGCATATTTT
CCTCCCGCGAGTCTCGCGCCTTTCTCTTTACCTGTTTAGATATAACACCA
TTTTCTCTGTTTCTTCTGCCTTCTATCGTCGCCCCTGTTCCTTTCGGTAG
CCCAAACACCTCTCCGTCGACACCCCCCTCCCCCCCTCTCTCTCCTTCTC
TATAACGCTCTCTTTTTACGTCTTCCTTCGCTTTGTGCTACCAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13264:4577..5022+

>mRNA_L-elsbetiae_contig13264.2535.1 ID=mRNA_L-elsbetiae_contig13264.2535.1|Name=mRNA_L-elsbetiae_contig13264.2535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig13264:4577..5022+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTAAAACAAAACTCATACCAGTGCGTGTTTTCCATCAATACCGC
GCATTCTGGAATCGAGCACGAACAAGAACCTCTCCCCCCCGAATTTCCGA
CTCTCCCGTTCGATCTACATCTCCCCCCTCTCCCCCCCCTATATATTTGC
ATATTTTCCTCCCGCGAGTCTCGCGCCTTTCTCTTTACCTGTTTAGATAT
AACACCATTTTCTCTGTTTCTTCTGCCTTCTATCGTCGCCCCTGTTCCTT
TCGGTAGCCCAAACACCTCTCCGTCGACACCCCCCTCCCCCCCTCTCTCT
CCTTCTCTATAAATGTATGTAAAACAAAACTCATACCAGTGCGTGTTTTC
CATCAATACCGCGCATTCTGGAATCGAGCACGAACAAGAACCTCTCCCCC
CCGAATTTCCGACTCTCCCGTTCGATCTACATCTCCCCCCTCTCCCCCCC
CTATATATTTGCATATTTTCCTCCCGCGAGTCTCGCGCCTTTCTCTTTAC
CTGTTTAGATATAACACCATTTTCTCTGTTTCTTCTGCCTTCTATCGTCG
CCCCTGTTCCTTTCGGTAGCCCAAACACCTCTCCGTCGACACCCCCCTCC
CCCCCTCTCTCTCCTTCTCTATAA
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