mRNA_L-elsbetiae_contig10207.253.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10207.253.1
Unique NamemRNA_L-elsbetiae_contig10207.253.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10207.253.1 vs. uniprot
Match: A0A6H5JRF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF0_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.410e-32
Identity = 92/159 (57.86%), Postives = 103/159 (64.78%), Query Frame = 1 
Query:   58 LSDARKAEASREI-----SSDGESSGRAGTQEEVWRLRRDCDRLRDQLGEFENGDVPPPGAKRMKSLEDQVERLSEENMRQIENARFLALRVEREKEELSQELISAKLQVAQLYMEVDGLKLQHRQAT-VAAEAAHALEMESASASPANSKSDPPSPAS 516
            L+D R+A   RE      S+D  +SG AG++EEV RLRRDCD+LRDQL EFE G+VPPPGAKR+KSLE QVERLSEENMRQ + A                             MEVDGLKLQHRQAT VAA  AHAL M+SAS SPA  KS PPSPAS
Sbjct:  658 LNDLRRAGGVREAARRGGSADDLTSGEAGSEEEVLRLRRDCDKLRDQLSEFEGGEVPPPGAKRIKSLEAQVERLSEENMRQSDKANXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEVDGLKLQHRQATAVAAREAHALGMDSASGSPATPKSAPPSPAS 816
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BLAST of mRNA_L-elsbetiae_contig10207.253.1 vs. uniprot
Match: D8LMU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU0_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.930e-23
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:  277 MRQIENARFLALRVEREKEELSQELISAKLQVAQLYMEVDGLKLQHRQAT-VAAEAAHALEMESASASPANSKSDPPSPAS 516
            MRQ + A  LA++VEREKEEL+Q+LISAKLQVAQLYMEVDGLKLQHRQAT VAA  AHAL M+SAS SPA  KS PPSPAS
Sbjct:    1 MRQSDKANSLAVQVEREKEELNQQLISAKLQVAQLYMEVDGLKLQHRQATAVAAREAHALGMDSASGSPATPKSAPPSPAS 81
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10207.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRF0_9PHAE3.410e-3257.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMU0_ECTSI2.930e-2377.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10207contigL-elsbetiae_contig10207:4927..6737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size624
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10207.253.1prot_L-elsbetiae_contig10207.253.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10207 4948..6737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815251.5389714-UTR-L-elsbetiae_contig10207:4926..49471622815251.5389714-UTR-L-elsbetiae_contig10207:4926..4947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10207 4927..4947 +
1691682796.6997788-UTR-L-elsbetiae_contig10207:4926..49471691682796.6997788-UTR-L-elsbetiae_contig10207:4926..4947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10207 4927..4947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815251.5505378-CDS-L-elsbetiae_contig10207:4947..51091622815251.5505378-CDS-L-elsbetiae_contig10207:4947..5109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10207 4948..5109 +
1691682796.713631-CDS-L-elsbetiae_contig10207:4947..51091691682796.713631-CDS-L-elsbetiae_contig10207:4947..5109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10207 4948..5109 +
1622815251.564-CDS-L-elsbetiae_contig10207:5877..60091622815251.564-CDS-L-elsbetiae_contig10207:5877..6009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10207 5878..6009 +
1691682796.7217472-CDS-L-elsbetiae_contig10207:5877..60091691682796.7217472-CDS-L-elsbetiae_contig10207:5877..6009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10207 5878..6009 +
1622815251.5743988-CDS-L-elsbetiae_contig10207:6428..67371622815251.5743988-CDS-L-elsbetiae_contig10207:6428..6737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10207 6429..6737 +
1691682796.7334247-CDS-L-elsbetiae_contig10207:6428..67371691682796.7334247-CDS-L-elsbetiae_contig10207:6428..6737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10207 6429..6737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10207.253.1

>prot_L-elsbetiae_contig10207.253.1 ID=prot_L-elsbetiae_contig10207.253.1|Name=mRNA_L-elsbetiae_contig10207.253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MLKDVSAERDAALSDARKAEASREISSDGESSGRAGTQEEVWRLRRDCDR
LRDQLGEFENGDVPPPGAKRMKSLEDQVERLSEENMRQIENARFLALRVE
REKEELSQELISAKLQVAQLYMEVDGLKLQHRQATVAAEAAHALEMESAS
ASPANSKSDPPSPASHQYSQSPPSPASPPPASPPPISPSGSLASPNTMEL
*
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mRNA from alignment at L-elsbetiae_contig10207:4927..6737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10207.253.1 ID=mRNA_L-elsbetiae_contig10207.253.1|Name=mRNA_L-elsbetiae_contig10207.253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1811bp|location=Sequence derived from alignment at L-elsbetiae_contig10207:4927..6737+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCTGGACGACGTGAACTTGATGCTTAAGGACGTTTCCGCCGAGAGGGA
CGCCGCCCTCAGCGACGCCCGGAAGGCGGAGGCCAGCCGAGAAATTTCCT
CCGACGGGGAGAGCAGCGGGAGGGCCGGCACCCAGGAGGAGGTCTGGAGG
TTGAGGAGAGACTGCGACAGGCTCCGCGACCAGGTTTGCCGAGCCCCCTC
CCTCCGTTTCTGTCCTTTTTTTTTTGTGTGTGTTTGGGTATTTGTTCGTT
TCGTGCGTGTCGTGTTTTTTGAGCGGAGGCCATTTTTAAAAAGTCTGGCC
CTGCCTGCCCACGTGAGGGGAGCCGCGGAAGAGAATCAACGAGAGGGCCA
AGGGTTTGTGCTCTTCTTGTGTTGCCAGTGCGTGTGTGGCTTGTTTCATG
GGTTCCGATTTGTGGGCTTGGGTTGGGGAGAGCTTACGGGCGAAGTACGG
GGACGACTGCGACAAATACGCCGCACACCCCAGGTCTGAAAGTCGGCTCG
TGTTGTTGTTGGTGCCGTGTGTTTTGGCCACACATGTCTCTCTTGCTCCC
TGTAGTTATTTTTTTTTTGTGTGTGACTTTTTTTTACTGCTGTGTGTGTG
TTTCTTTTTGTGACTTTTTTTTACTGCTGTGTGGTTTTATTTTTTCCCTT
GACGTGCGGTGAATTCGTTTCTTCTTGGAGAGCAAAAGATTTGAAGAGGC
GTGCACAAGCTAGATCCGAAGCTGAGACCGCAACTCGCGGTGCGACATAA
GGTTTGCACGTGGGCTTGCTCACGACTGGAGATTACGAGTGTATGTAGAG
ATAATTTTGCGGATTTTGTGTACCGTAGTTTTTTGTTTCAACGATCTTGT
ATGAGCTAAGTATGTAAGTCCTGCTTTTACGCCATTTCTGCCCCCATGCT
GGCACCAAACCCTCGCGTTGATCTCTTCATACCTTGCCCTGAAACTGCTA
GTTGGGCGAGTTCGAAAACGGGGATGTGCCTCCCCCGGGGGCGAAGAGGA
TGAAGTCGTTGGAGGACCAAGTCGAGCGCTTGTCGGAGGAGAACATGCGG
CAGATCGAGAACGCCAGATTCTTGGCGCTACGGGTGTGTACACACACATA
TGTGTCCTGTCGTCGTCGTCGTCGTCGCCATTAAAGTTGCTGCTTTCGTG
GATGAGGCGCCTGCCGCCGTCATTAAAGTTGCTGCTTTCGTGGACGAGGC
GCCTGCCGCCGTCGCTAAAGTTGCTTCTTTCGTGGACGAGGCGTTGGGGT
TGTGGTTGGTTTTGTTCATGGCTGTTTGGAGGTACATGTACACTCCTCTT
CAGGTTACTCCATGCCACGTTCTTGTCAACCAGTAAATGCTAGGAGCGCG
CGTGCTTTGTCAACCCGAGCCCTTTGGTGCCCCCCCTCCCTCCCCGAGGC
TGCTAGACTACATACATAGCCAACTCCTTTTTTTCTTCCCGCGATGGACA
AGAAACAAAACGCCTCTTTTCTGTTGCCTGGCGCCTGCGCTCTCGCGAAA
AGGTGGAGCGCGAAAAGGAAGAACTGAGCCAGGAGCTGATATCGGCCAAG
CTGCAGGTGGCGCAGCTCTACATGGAGGTCGACGGCCTCAAGCTCCAGCA
CCGGCAGGCCACGGTGGCGGCCGAGGCGGCGCACGCGCTGGAGATGGAGA
GCGCCAGCGCGTCCCCGGCCAACTCCAAGTCCGACCCGCCCTCGCCGGCA
TCCCACCAATACTCGCAGTCTCCCCCGTCTCCCGCCTCCCCTCCCCCGGC
TTCTCCCCCTCCCATCTCGCCCTCTGGCTCCCTCGCGTCGCCCAACACCA
TGGAGTTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10207:4927..6737+

>mRNA_L-elsbetiae_contig10207.253.1 ID=mRNA_L-elsbetiae_contig10207.253.1|Name=mRNA_L-elsbetiae_contig10207.253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig10207:4927..6737+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTAAGGACGTTTCCGCCGAGAGGGACGCCGCCCTCAGCGACGCCCG
GAAGGCGGAGGCCAGCCGAGAAATTTCCTCCGACGGGGAGAGCAGCGGGA
GGGCCGGCACCCAGGAGGAGGTCTGGAGGTTGAGGAGAGACTGCGACAGG
CTCCGCGACCAGATGCTTAAGGACGTTTCCGCCGAGAGGGACGCCGCCCT
CAGCGACGCCCGGAAGGCGGAGGCCAGCCGAGAAATTTCCTCCGACGGGG
AGAGCAGCGGGAGGGCCGGCACCCAGGAGGAGGTCTGGAGGTTGAGGAGA
GACTGCGACAGGCTCCGCGACCAGTTGGGCGAGTTCGAAAACGGGGATGT
GCCTCCCCCGGGGGCGAAGAGGATGAAGTCGTTGGAGGACCAAGTCGAGC
GCTTGTCGGAGGAGAACATGCGGCAGATCGAGAACGCCAGATTCTTGGCG
CTACGGTTGGGCGAGTTCGAAAACGGGGATGTGCCTCCCCCGGGGGCGAA
GAGGATGAAGTCGTTGGAGGACCAAGTCGAGCGCTTGTCGGAGGAGAACA
TGCGGCAGATCGAGAACGCCAGATTCTTGGCGCTACGGGTGGAGCGCGAA
AAGGAAGAACTGAGCCAGGAGCTGATATCGGCCAAGCTGCAGGTGGCGCA
GCTCTACATGGAGGTCGACGGCCTCAAGCTCCAGCACCGGCAGGCCACGG
TGGCGGCCGAGGCGGCGCACGCGCTGGAGATGGAGAGCGCCAGCGCGTCC
CCGGCCAACTCCAAGTCCGACCCGCCCTCGCCGGCATCCCACCAATACTC
GCAGTCTCCCCCGTCTCCCGCCTCCCCTCCCCCGGCTTCTCCCCCTCCCA
TCTCGCCCTCTGGCTCCCTCGCGTCGCCCAACACCATGGAGTTGTGAGTG
GAGCGCGAAAAGGAAGAACTGAGCCAGGAGCTGATATCGGCCAAGCTGCA
GGTGGCGCAGCTCTACATGGAGGTCGACGGCCTCAAGCTCCAGCACCGGC
AGGCCACGGTGGCGGCCGAGGCGGCGCACGCGCTGGAGATGGAGAGCGCC
AGCGCGTCCCCGGCCAACTCCAAGTCCGACCCGCCCTCGCCGGCATCCCA
CCAATACTCGCAGTCTCCCCCGTCTCCCGCCTCCCCTCCCCCGGCTTCTC
CCCCTCCCATCTCGCCCTCTGGCTCCCTCGCGTCGCCCAACACCATGGAG
TTGTGA
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