mRNA_L-elsbetiae_contig13241.2525.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13241.2525.1
Unique NamemRNA_L-elsbetiae_contig13241.2525.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13241.2525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13241contigL-elsbetiae_contig13241:3064..5143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size429
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13241.2525.1prot_L-elsbetiae_contig13241.2525.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13241 3064..4696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.590337-CDS-L-elsbetiae_contig13241:3063..32401622815502.590337-CDS-L-elsbetiae_contig13241:3063..3240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13241 3064..3240 -
1691682929.6132183-CDS-L-elsbetiae_contig13241:3063..32401691682929.6132183-CDS-L-elsbetiae_contig13241:3063..3240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13241 3064..3240 -
1622815502.6006541-CDS-L-elsbetiae_contig13241:4561..46961622815502.6006541-CDS-L-elsbetiae_contig13241:4561..4696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13241 4562..4696 -
1691682929.6237233-CDS-L-elsbetiae_contig13241:4561..46961691682929.6237233-CDS-L-elsbetiae_contig13241:4561..4696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13241 4562..4696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.614048-UTR-L-elsbetiae_contig13241:4696..47331622815502.614048-UTR-L-elsbetiae_contig13241:4696..4733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13241 4697..4733 -
1691682929.6334097-UTR-L-elsbetiae_contig13241:4696..47331691682929.6334097-UTR-L-elsbetiae_contig13241:4696..4733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13241 4697..4733 -
1622815502.6281083-UTR-L-elsbetiae_contig13241:5064..51431622815502.6281083-UTR-L-elsbetiae_contig13241:5064..5143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13241 5065..5143 -
1691682929.6431131-UTR-L-elsbetiae_contig13241:5064..51431691682929.6431131-UTR-L-elsbetiae_contig13241:5064..5143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13241 5065..5143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13241.2525.1

>prot_L-elsbetiae_contig13241.2525.1 ID=prot_L-elsbetiae_contig13241.2525.1|Name=mRNA_L-elsbetiae_contig13241.2525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MSQVCQAASNDPGTVNFINGFEPAKLPLALACQIARGQVHLQTIDDGQKD
VHFFPTRLEIDEFQQERRLPPFVSSAPLATEEEATRRLDKALAGGLFLIV
GAHM
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mRNA from alignment at L-elsbetiae_contig13241:3064..5143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13241.2525.1 ID=mRNA_L-elsbetiae_contig13241.2525.1|Name=mRNA_L-elsbetiae_contig13241.2525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2080bp|location=Sequence derived from alignment at L-elsbetiae_contig13241:3064..5143- (Laminarionema elsbetiae ELsaHSoW15)
GACCACAGAAGGGTAGTTTTGTCCGGAGGAGCGAGCCACGGCGCAAACTG
GAAACCATAATACTTAATCGTAAATAGCGGTGAGTCAAAGAGGGGCAACA
TTATACTAGTCTAACATGCTATCTAGACATGTATCTATGTACAGTATGTT
GCAGGATATTGAGCATCGAATATATTTTTGTGGGGGGGGCGAAAACGCTC
CTCACCACATCGATCGCTGTACAGACTCTGTGCACAGACAGGGACAGATG
ATGGTTATTTTTGGCGCGTTTACAGTACGTTGTTGGGTTTCTGTGTTTCT
TTCTGGGAAATACGTGGCTGATCTTGTTTTGATTGTAACCGTGCCTATTT
TCCTGTCGACGTGCGCCACCCTTCGCCCCTCGTCTCTCCCACACAAACAC
ACTTCCGCAGTCCAGCGAGGCCGAGACGGTCGTGTGCGTGTCCGACGATG
AGCCAAGTTTGCCAAGCAGCCTCCAATGACCCGGGCACTGTGAACTTTAT
CAACGGGTTTGAGCCAGCTAAGCTGCCGCTGGCTTTGGCCTGCCAAATCG
CCCGTGGTCAAGTGCATTTGCAGACAATCGACGTGAGTGGGGACTACTGC
TGCTGTTGTGCTCGGCATTGTTTCATATTGCACGAGGTTGGGCTATCTAT
ACCAACACAATTTATAATGAGTAGCCCGGCAACGAAAATGGCATCGTTGC
CGAAATAGGCTTCTAGAATTTAGCAAGTAGTGAGTGTGAAAATATCTGCT
GAGGGTGGTGTTTAAAATATCTGCTGAGGGTGGTGTTTAAAAAAACTCGA
TGTTGATGGTATCTGTGTGTGTGTCAGCTAGTCACAGGTCGCGACCACCA
AGGGCTTGAACGAAAGCGAAAAATAGCACACACCTGTTGGTACTTCTAAC
AATCGTAAACCGGGACGAGTCTGCACGGTGAAGTGCGAAAATGAGCGTTT
TGAGTCGCTGTAGGTAGTACCTCGCTTTTTACTTGTGCGATGAGCTCGGC
CCGCATCAGCACCACCGCGGAGTTCCGCGAAAGCTGTATGCTAGACAAAT
CGAATGCTTGCTACATTGTTACACACTGTCACCTCTTCGCCCTGTGAGGT
GAAAAATACGTTGGATAACGACCTTTTCTCCCGCCCGCAGGCTGTCGGCG
CGCTCGCGAGAAAAAAGCACGAACGAGTTTGCTGCGTGCAGTCACCGTCG
CTACCATACAGCAGTCGTATCCTATTAAACGTGTGACTGCCGGTGTCGGT
CCAATTTGTATACATATATGGCTTTACCCTGCGCCGAGAATACGCTGCTG
TGTGGTGTTGTCGTGATCGTGCGAGAGGCGGGGGTTCGCGAGGGCGGGGA
GGGAGGGGGGGCGTCATCTCGCAATCGGGATGCCGAGGGGGGGGGGTCAA
CCAAAGCAGGATTTTGCATAGAGCCGGTGCATTACCCGTAAGAATCCAGT
GCTTACTTGTTGCACCGCACACAGCTCAATGCAGTTACGAGGAGCACTGC
CCCCCGGCTGAATGGCCCGAGTAATATGTTCAAAAGTAGTTCCAGGGGCG
CTGTTGTAGACACTGTTACCCCCGTTCACCGACCCTGACTAACTATTAAG
CGGTAGGCCCAAAAACAGTCATCCGTGCCGGTTTCTGGTTTTTGGTCTGA
TTCTGGTTTGTTTCGGGGGTTTTATCTTCCGTTTTATTTCGTTGGCGTTG
TGCGAAAAAATCGCAACGGAGCGAGTGTCGTGTCGTGTACGCTTTCGTAG
AGTTTCGGTATTGTTGTTTTGTTACATCGGTTTTGTACGGGTGCACCTTT
GGTGGGATATAATTCAAGAAATCAAAGATGAAACCTCCCCTTCAGAGACA
AGACTCCGTGCTTAAGTAACAATAACATCCATTTTTTTTACATCGCACGG
CAGGACGGGCAAAAAGACGTCCATTTCTTTCCGACGAGGCTGGAGATCGA
TGAGTTCCAGCAGGAGCGGCGCTTACCCCCGTTTGTATCGTCTGCTCCTC
TGGCGACGGAGGAGGAAGCAACGCGGCGGCTAGACAAAGCACTAGCAGGA
GGGTTGTTTTTGATCGTGGGCGCCCATATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13241:3064..5143-

>mRNA_L-elsbetiae_contig13241.2525.1 ID=mRNA_L-elsbetiae_contig13241.2525.1|Name=mRNA_L-elsbetiae_contig13241.2525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig13241:3064..5143- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCAAGTTTGCCAAGCAGCCTCCAATGACCCGGGCACTGTGAACTT
TATCAACGGGTTTGAGCCAGCTAAGCTGCCGCTGGCTTTGGCCTGCCAAA
TCGCCCGTGGTCAAGTGCATTTGCAGACAATCGACATGAGCCAAGTTTGC
CAAGCAGCCTCCAATGACCCGGGCACTGTGAACTTTATCAACGGGTTTGA
GCCAGCTAAGCTGCCGCTGGCTTTGGCCTGCCAAATCGCCCGTGGTCAAG
TGCATTTGCAGACAATCGACGACGGGCAAAAAGACGTCCATTTCTTTCCG
ACGAGGCTGGAGATCGATGAGTTCCAGCAGGAGCGGCGCTTACCCCCGTT
TGTATCGTCTGCTCCTCTGGCGACGGAGGAGGAAGCAACGCGGCGGCTAG
ACAAAGCACTAGCAGGAGGGTTGTTTTTGATCGTGGGCGCCCATATGGAC
GGGCAAAAAGACGTCCATTTCTTTCCGACGAGGCTGGAGATCGATGAGTT
CCAGCAGGAGCGGCGCTTACCCCCGTTTGTATCGTCTGCTCCTCTGGCGA
CGGAGGAGGAAGCAACGCGGCGGCTAGACAAAGCACTAGCAGGAGGGTTG
TTTTTGATCGTGGGCGCCCATATG
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