mRNA_L-elsbetiae_contig13240.2522.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13240.2522.1
Unique NamemRNA_L-elsbetiae_contig13240.2522.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13240.2522.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.270e-33
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = -3 
Query:    1 GGMRSGLSRKFVRSLMRHLNMRADSRQREELRAMVETLKNRSAVRGVDMKHELKREAVSLLGPELAREAFEASLSETRTEF 243
            GGMRSGLSRKFVRSLMRHLNMRADSRQREELR+MVETLK+RS+VRGVDMK E+KREAVSLLGPELAREAFEASLSETR EF
Sbjct:  308 GGMRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETRNEF 388
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13240.2522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE1.270e-3392.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13240contigL-elsbetiae_contig13240:73..929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size859
Cds size537
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.4369485-CDS-L-elsbetiae_contig13240:72..6091622815502.4369485-CDS-L-elsbetiae_contig13240:72..609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13240 73..609 +
1691682929.5277348-CDS-L-elsbetiae_contig13240:72..6091691682929.5277348-CDS-L-elsbetiae_contig13240:72..609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13240 73..609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.448161-UTR-L-elsbetiae_contig13240:609..9291622815502.448161-UTR-L-elsbetiae_contig13240:609..929Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13240 610..929 +
1691682929.5389984-UTR-L-elsbetiae_contig13240:609..9291691682929.5389984-UTR-L-elsbetiae_contig13240:609..929Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13240 610..929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13240.2522.1prot_L-elsbetiae_contig13240.2522.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13240 73..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13240.2522.1

>prot_L-elsbetiae_contig13240.2522.1 ID=prot_L-elsbetiae_contig13240.2522.1|Name=mRNA_L-elsbetiae_contig13240.2522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
ELSPGLRQGCLEGLSGELGAQERHRLALELVLHVDPPHGAPVLERLDHGP
ELFSLAGVGPHVEVAHQAAHELSGETRAHAATNAAAAAEGAATAERTPLP
PGCCCRSNTGAGASSTAAPLAERSCCRHLVLLAPRRRADAAVADAPPHEG
SAARNSGAGGSGGGGGGGGGRSVHRRRG*
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mRNA from alignment at L-elsbetiae_contig13240:73..929+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13240.2522.1 ID=mRNA_L-elsbetiae_contig13240.2522.1|Name=mRNA_L-elsbetiae_contig13240.2522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=857bp|location=Sequence derived from alignment at L-elsbetiae_contig13240:73..929+ (Laminarionema elsbetiae ELsaHSoW15)
GAACTCAGTCCGGGTCTCCGACAAGGATGCCTCGAAGGCCTCTCGGGCGA
GCTCGGGGCCCAGGAGAGACACCGCCTCGCGCTTGAGCTCGTGCTTCATG
TCGACCCCCCTCACGGCGCTCCGGTTCTTGAGCGTCTCGACCATGGCCCT
GAGCTCTTCTCGCTGGCGGGAGTCGGCCCTCATGTTGAGGTGGCGCATCA
GGCTGCGCACGAACTTTCGGGAGAGACCCGAGCGCATGCCGCCACCAATG
CCGCCGCTGCTGCCGAGGGCGCCGCCACCGCCGAGCGAACCCCCCTGCCT
CCTGGGTGCTGCTGCCGCAGCAACACCGGCGCCGGGGCTTCGTCCACTGC
TGCTCCCCTGGCGGAACGAAGCTGCTGCCGTCACCTCGTGCTGCTGGCGC
CCCGCCGCCGCGCTGACGCTGCCGTCGCTGATGCTCCTCCGCATGAAGGC
AGTGCCGCTAGAAACAGCGGTGCTGGAGGCAGCGGCGGCGGCGGCGGCGG
CGGCGGCGGTAGGAGCGTGCATCGACGACGGGGGTGATGACGCCACCGCA
TAGGCGCCTTCTTCGTTGTCCGTCGCCATGGCGGCCAGACCTCCGTCGTC
GAACATGGGCATGTCGACGTCTTCGGAGGGGGCCGTCGACACACCGCTCG
AACTGCTGCTGCTGCTGCGAGACGCAGGCGCAAGCGCACCGGCGGTGAGA
TAAGAAGAGGAGGAGCTTGTCTCCTCTTCGTCGCCAAGTGCAATTGCAAC
GACGCTCTCGATCCCGCCGGCGCCGCCATCCGTAGCCACGGCTTCGCCCG
TAAGAACGTCGAGGCTACCGTTGCTGCTGCTGCTGCTGCTGCGGCCGCCA
CCGCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13240:73..929+

>mRNA_L-elsbetiae_contig13240.2522.1 ID=mRNA_L-elsbetiae_contig13240.2522.1|Name=mRNA_L-elsbetiae_contig13240.2522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig13240:73..929+ (Laminarionema elsbetiae ELsaHSoW15)
GAACTCAGTCCGGGTCTCCGACAAGGATGCCTCGAAGGCCTCTCGGGCGA
GCTCGGGGCCCAGGAGAGACACCGCCTCGCGCTTGAGCTCGTGCTTCATG
TCGACCCCCCTCACGGCGCTCCGGTTCTTGAGCGTCTCGACCATGGCCCT
GAGCTCTTCTCGCTGGCGGGAGTCGGCCCTCATGTTGAGGTGGCGCATCA
GGCTGCGCACGAACTTTCGGGAGAGACCCGAGCGCATGCCGCCACCAATG
CCGCCGCTGCTGCCGAGGGCGCCGCCACCGCCGAGCGAACCCCCCTGCCT
CCTGGGTGCTGCTGCCGCAGCAACACCGGCGCCGGGGCTTCGTCCACTGC
TGCTCCCCTGGCGGAACGAAGCTGCTGCCGTCACCTCGTGCTGCTGGCGC
CCCGCCGCCGCGCTGACGCTGCCGTCGCTGATGCTCCTCCGCATGAAGGC
AGTGCCGCTAGAAACAGCGGTGCTGGAGGCAGCGGCGGCGGCGGCGGCGG
CGGCGGCGGTAGGAGCGTGCATCGACGACGGGGGTGAGAACTCAGTCCGG
GTCTCCGACAAGGATGCCTCGAAGGCCTCTCGGGCGAGCTCGGGGCCCAG
GAGAGACACCGCCTCGCGCTTGAGCTCGTGCTTCATGTCGACCCCCCTCA
CGGCGCTCCGGTTCTTGAGCGTCTCGACCATGGCCCTGAGCTCTTCTCGC
TGGCGGGAGTCGGCCCTCATGTTGAGGTGGCGCATCAGGCTGCGCACGAA
CTTTCGGGAGAGACCCGAGCGCATGCCGCCACCAATGCCGCCGCTGCTGC
CGAGGGCGCCGCCACCGCCGAGCGAACCCCCCTGCCTCCTGGGTGCTGCT
GCCGCAGCAACACCGGCGCCGGGGCTTCGTCCACTGCTGCTCCCCTGGCG
GAACGAAGCTGCTGCCGTCACCTCGTGCTGCTGGCGCCCCGCCGCCGCGC
TGACGCTGCCGTCGCTGATGCTCCTCCGCATGAAGGCAGTGCCGCTAGAA
ACAGCGGTGCTGGAGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGG
AGCGTGCATCGACGACGGGGGTGA
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