mRNA_L-elsbetiae_contig1324.2520.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1324.2520.1 vs. uniprot
Match: A0A6H5KCA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCA8_9PHAE) HSP 1 Score: 461 bits (1187), Expect = 6.480e-155 Identity = 208/306 (67.97%), Postives = 253/306 (82.68%), Query Frame = 2 Query: 2 STLLANIFPRNAVVPTSMPSMGLKVAQLQGHDEDWWDPYQLMYAHNRPNVTDEIGIPPSKTPRLLLTVRNPLLHKASIYFESVCRFGLHLK-NGTIDMEEATVARTESNVYDSQQFSYCRDPELWVGSRQFMKIYRNFQTNWLSYGAAERHPCLLPNPEMNIWKAGPADSKGACGALAAKGEDAAGWEEYFERQADAAVRRLEGALWVGVTERMEESACLLFHTLGKKEREVPQFRLKSPRPVSVWHQKAKDKAAAYDKADWRVFDAANDILDLRLWAARERLKDAGDDERERLGGRCFDILAGKD 916 ++LLAN+FPR A+VPTS PS GL+V LQGHD +WW P+QLM++HNR NVTD IGIPP+KTPR+L+T+RNPLLHKASI+FESVCRFG H+ NGTID E AT+AR +++Q+++CRDPE+WVGS+QF K+YRNF+ WLSYGAAE HPC+ P+PE N W+ D G C A+ A G+DA W YFER ADAA+RR+EGALWVGVTERMEES CLLF TLGKKE E+PQ RLK+PRP++VWH+KAK+KAA+YD+ADWRVF+AAND LDLRLW ARERLK AG++ER RLG CF +LAGKD Sbjct: 122 TSLLANVFPRTALVPTSHPSKGLRVNHLQGHDSEWWKPFQLMFSHNRANVTDTIGIPPTKTPRVLITIRNPLLHKASIFFESVCRFGQHISDNGTIDQEAATLARVNGKGVETEQYNFCRDPEMWVGSKQFDKVYRNFEARWLSYGAAEGHPCIRPDPEFNRWRVDDTDVGGTCKAIKASGQDADVWAAYFERTADAAIRRMEGALWVGVTERMEESLCLLFLTLGKKESEMPQHRLKTPRPITVWHEKAKEKAASYDRADWRVFEAANDFLDLRLWTARERLKSAGEEERARLGDHCFQVLAGKD 427
BLAST of mRNA_L-elsbetiae_contig1324.2520.1 vs. uniprot
Match: D8LDK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK9_ECTSI) HSP 1 Score: 171 bits (434), Expect = 3.810e-45 Identity = 103/305 (33.77%), Postives = 144/305 (47.21%), Query Frame = 2 Query: 2 STLLANIFPRNAVVPTSMPSMGLKVAQLQGHDEDWWDPYQLM-YAHNRPNVTDEIGIPPSKTPRLLLTVRNPLLHKASIYFESVCRFGLHLKNGTIDMEEATVARTESNVYDSQQFSYCRDPELWVGSRQFMKIYRNFQTNWLSYGAAERHPCLLPNPEMNIWKAGPADSKGACGALAAKGEDAAGWEEYFERQADAAVRRLEGALWVGVTERMEESACLLFHTLGKKEREVPQFRLKSPRPVSVWHQKAKDKAAAYDKADWRVFDAANDILDLRLWAARERLKDAGDDERERLGGRCFDILAGK 913 S +L +IF AVVPTS S +K+ ++QGHD++WW PY+ + YAHN EE ++H C+ + + K G + +C +L A G+ A EEY++R A++A++RL LWVGVTER +E+ CLLF TLGK + +R K PRP+SVWH+ A K YD+ADW+VF+AANDILDLR+W ARERLK AG++E ERLG C +++ G+ Sbjct: 82 SFVLRDIFGEEAVVPTSHESGYMKLGEVQGHDDNWWAPYEAVTYAHN---------------------------------------------------EE------------------------------------------------DKHRCVYGHAWVKPEKGGDHHDEESCNSLKASGKHNAILEEYYDRMAESAIKRLGDGLWVGVTERSDEADCLLFLTLGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDLRIWTARERLKHAGEEELERLGKHCVNVINGQ 287 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1324.2520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1324.2520.1 >prot_L-elsbetiae_contig1324.2520.1 ID=prot_L-elsbetiae_contig1324.2520.1|Name=mRNA_L-elsbetiae_contig1324.2520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=291bp MPSMGLKVAQLQGHDEDWWDPYQLMYAHNRPNVTDEIGIPPSKTPRLLLTback to top mRNA from alignment at L-elsbetiae_contig1324:107..12549+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1324.2520.1 ID=mRNA_L-elsbetiae_contig1324.2520.1|Name=mRNA_L-elsbetiae_contig1324.2520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12443bp|location=Sequence derived from alignment at L-elsbetiae_contig1324:107..12549+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1324:107..12549+ >mRNA_L-elsbetiae_contig1324.2520.1 ID=mRNA_L-elsbetiae_contig1324.2520.1|Name=mRNA_L-elsbetiae_contig1324.2520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1746bp|location=Sequence derived from alignment at L-elsbetiae_contig1324:107..12549+ (Laminarionema elsbetiae ELsaHSoW15)back to top |