mRNA_L-elsbetiae_contig13239.2519.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13239.2519.1
Unique NamemRNA_L-elsbetiae_contig13239.2519.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13239.2519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13239contigL-elsbetiae_contig13239:2594..3058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_006110.1
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.0315046-CDS-L-elsbetiae_contig13239:2593..30581622815502.0315046-CDS-L-elsbetiae_contig13239:2593..3058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13239 2594..3058 +
1691682929.2806437-CDS-L-elsbetiae_contig13239:2593..30581691682929.2806437-CDS-L-elsbetiae_contig13239:2593..3058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13239 2594..3058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13239.2519.1prot_L-elsbetiae_contig13239.2519.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13239 2594..3058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13239.2519.1

>prot_L-elsbetiae_contig13239.2519.1 ID=prot_L-elsbetiae_contig13239.2519.1|Name=mRNA_L-elsbetiae_contig13239.2519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
PPGRTSASTSAGTRMLPLPLPLPLPLLLQLPLPPAAVPHFQPEDPSRSRV
SIAGGSGACTGGGSGARSPPPLPTPLGPPPVSWPAGGGGARWEGGGGAGG
EGAAVGGDGAVVLGGGGRTTSGVLSTAESSAGQVVGKIAAMAASSRGAVS
PPPPP
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mRNA from alignment at L-elsbetiae_contig13239:2594..3058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13239.2519.1 ID=mRNA_L-elsbetiae_contig13239.2519.1|Name=mRNA_L-elsbetiae_contig13239.2519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=465bp|location=Sequence derived from alignment at L-elsbetiae_contig13239:2594..3058+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCAGGACGCACAAGCGCATCCACCTCCGCCGGCACGAGGATGCTGCC
GCTCCCGCTGCCGCTGCCACTGCCGCTGCTGCTGCAGCTACCGCTGCCCC
CGGCCGCCGTGCCCCACTTCCAGCCCGAAGACCCCTCTCGCTCGCGCGTC
TCGATCGCCGGGGGTAGCGGGGCCTGCACCGGCGGGGGCTCCGGCGCCCG
CAGCCCCCCCCCGCTCCCGACCCCTCTGGGCCCCCCGCCAGTGTCGTGGC
CCGCGGGCGGCGGCGGCGCGCGCTGGGAGGGCGGAGGCGGAGCGGGCGGG
GAGGGCGCAGCGGTGGGCGGGGACGGTGCCGTGGTTCTCGGCGGCGGCGG
GCGCACCACCTCCGGTGTCCTCAGTACGGCGGAGTCATCGGCGGGGCAAG
TGGTCGGGAAAATCGCAGCAATGGCCGCTTCGTCCAGGGGGGCGGTGTCG
CCGCCGCCGCCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13239:2594..3058+

>mRNA_L-elsbetiae_contig13239.2519.1 ID=mRNA_L-elsbetiae_contig13239.2519.1|Name=mRNA_L-elsbetiae_contig13239.2519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig13239:2594..3058+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCAGGACGCACAAGCGCATCCACCTCCGCCGGCACGAGGATGCTGCC
GCTCCCGCTGCCGCTGCCACTGCCGCTGCTGCTGCAGCTACCGCTGCCCC
CGGCCGCCGTGCCCCACTTCCAGCCCGAAGACCCCTCTCGCTCGCGCGTC
TCGATCGCCGGGGGTAGCGGGGCCTGCACCGGCGGGGGCTCCGGCGCCCG
CAGCCCCCCCCCGCTCCCGACCCCTCTGGGCCCCCCGCCAGTGTCGTGGC
CCGCGGGCGGCGGCGGCGCGCGCTGGGAGGGCGGAGGCGGAGCGGGCGGG
GAGGGCGCAGCGGTGGGCGGGGACGGTGCCGTGGTTCTCGGCGGCGGCGG
GCGCACCACCTCCGGTGTCCTCAGTACGGCGGAGTCATCGGCGGGGCAAG
TGGTCGGGAAAATCGCAGCAATGGCCGCTTCGTCCAGGGGGGCGGTGTCG
CCGCCGCCGCCGCCGCCGCCAGGACGCACAAGCGCATCCACCTCCGCCGG
CACGAGGATGCTGCCGCTCCCGCTGCCGCTGCCACTGCCGCTGCTGCTGC
AGCTACCGCTGCCCCCGGCCGCCGTGCCCCACTTCCAGCCCGAAGACCCC
TCTCGCTCGCGCGTCTCGATCGCCGGGGGTAGCGGGGCCTGCACCGGCGG
GGGCTCCGGCGCCCGCAGCCCCCCCCCGCTCCCGACCCCTCTGGGCCCCC
CGCCAGTGTCGTGGCCCGCGGGCGGCGGCGGCGCGCGCTGGGAGGGCGGA
GGCGGAGCGGGCGGGGAGGGCGCAGCGGTGGGCGGGGACGGTGCCGTGGT
TCTCGGCGGCGGCGGGCGCACCACCTCCGGTGTCCTCAGTACGGCGGAGT
CATCGGCGGGGCAAGTGGTCGGGAAAATCGCAGCAATGGCCGCTTCGTCC
AGGGGGGCGGTGTCGCCGCCGCCGCCGCCG
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