mRNA_L-elsbetiae_contig13226.2513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13226.2513.1
Unique NamemRNA_L-elsbetiae_contig13226.2513.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: D7G2C0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2C0_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 2.500e-49
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 2
Query:    2 FYGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            ++G  +ILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW
Sbjct:  270 YFGNDKILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 348          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A836CC21_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC21_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.170e-47
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 2
Query:    2 FYGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            ++G  +ILCGITSVAFSRSGRLLFAGYDDYNCYVWDVT++TG+PAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW
Sbjct:  272 YFGNDKILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTSNTGMPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 350          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A3R6Z757_9STRA (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A3R6Z757_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.840e-37
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    5 YGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            +   +ILCGITSV++S+SGR +FAGYDDYNCY WDV ++TG   YQL GHENRVSCLGV+P G+ALCTGSWDTLLK+W
Sbjct:  280 FSNDKILCGITSVSYSKSGRFMFAGYDDYNCYCWDVLSNTGAHVYQLTGHENRVSCLGVSPSGQALCTGSWDTLLKVW 357          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A7S2TQI3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQI3_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 4.980e-36
Identity = 59/78 (75.64%), Postives = 65/78 (83.33%), Query Frame = 2
Query:    5 YGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            Y   +ILCGITSVAFS+SG+ LFAGYDDYNCYVWD    TG    QL+GHENRVSCLGV+P+G ALCTGSWDTLLKIW
Sbjct:  168 YANEKILCGITSVAFSKSGKHLFAGYDDYNCYVWDTI--TGENTQQLSGHENRVSCLGVHPEGRALCTGSWDTLLKIW 243          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A397FXD3_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397FXD3_9STRA)

HSP 1 Score: 137 bits (344), Expect = 7.450e-36
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    5 YGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            +   +ILCGITSV++S+SGR +FAGYDDYNCY WDV ++TG   YQL GHENRVSCLGV+P G+ALCTGSWDTLLK+W
Sbjct:  635 FSNDKILCGITSVSYSKSGRFMFAGYDDYNCYCWDVLSNTGAHVYQLTGHENRVSCLGVSPSGQALCTGSWDTLLKVW 712          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A482SP31_9ARCH (WD40 repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP31_9ARCH)

HSP 1 Score: 125 bits (315), Expect = 5.370e-35
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 2
Query:   17 QILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
             I+CGITSV FSRSGR+LFAGYDDYNC  WDV  ST    YQL GHENRVSCL + P GEALCTGSWDT+LKIW
Sbjct:  104 NIVCGITSVTFSRSGRILFAGYDDYNCLGWDVLGSTDKHHYQLQGHENRVSCLDMAPSGEALCTGSWDTMLKIW 177          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A7R9U5X6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5X6_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.620e-34
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 2
Query:    5 YGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAY-QLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            +   +ILCG+TSV+FSRSGRLLFAGYDDY   VWD + S+  PA+  L GHENRVSCLGV+P G+ALCTGSWDTLLKIW
Sbjct:   57 FASEKILCGVTSVSFSRSGRLLFAGYDDYTNCVWDASLSSFSPAFGSLQGHENRVSCLGVSPNGDALCTGSWDTLLKIW 135          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A6V1KDD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KDD3_HETAK)

HSP 1 Score: 128 bits (321), Expect = 3.780e-34
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = 2
Query:    5 YGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            +G  +ILCGITSV+FS+SGRLLFAGYDDYN YVWD   +     ++L GH+NRVSCLGVNP GEAL TGSWDTLLKIW
Sbjct:  269 FGNDRILCGITSVSFSKSGRLLFAGYDDYNSYVWDTLKNDPSETFKLQGHDNRVSCLGVNPTGEALVTGSWDTLLKIW 346          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A7S2HG74_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HG74_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.350e-34
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 2
Query:    5 YGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQL-AGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            +G  +ILCGITSV FS+SGRLLFAGYDDYN  VWDV ++    A+QL   HENRVSCLGVNPKG+ALCTGSWDTLLKIW
Sbjct:  274 FGNDRILCGITSVGFSKSGRLLFAGYDDYNTIVWDVLSTGKQQAFQLHQPHENRVSCLGVNPKGDALCTGSWDTLLKIW 352          
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Match: A0A7S0DSU9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DSU9_9EUKA)

HSP 1 Score: 125 bits (315), Expect = 3.250e-33
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 2
Query:    5 YGRPQILCGITSVAFSRSGRLLFAGYDDYNCYVWDVTNSTGIPAYQLAGHENRVSCLGVNPKGEALCTGSWDTLLKIW 238
            Y   +ILCGITSVAFS+SGR LFAGYDDYNCYVWD  +  G+   QL GHENRVSCLGV   G+ALCTG WDTLL+IW
Sbjct:  276 YANEKILCGITSVAFSKSGRQLFAGYDDYNCYVWDTIS--GLNIQQLTGHENRVSCLGVQSNGQALCTGGWDTLLRIW 351          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13226.2513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2C0_ECTSI2.500e-4993.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CC21_9STRA1.170e-4789.87WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A3R6Z757_9STRA1.840e-3771.79Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A7S2TQI3_9EUKA4.980e-3675.64Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A397FXD3_9STRA7.450e-3671.79Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A482SP31_9ARCH5.370e-3575.68WD40 repeat domain-containing protein n=1 Tax=arch... [more]
A0A7R9U5X6_9STRA2.620e-3470.89Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6V1KDD3_HETAK3.780e-3471.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2HG74_9STRA8.350e-3474.68Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0DSU9_9EUKA3.250e-3371.79Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13226contigL-elsbetiae_contig13226:3772..4842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.3251166-CDS-L-elsbetiae_contig13226:3772..38551622815501.3251166-CDS-L-elsbetiae_contig13226:3772..3855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13226 3773..3855 -
1691682928.8346114-CDS-L-elsbetiae_contig13226:3772..38551691682928.8346114-CDS-L-elsbetiae_contig13226:3772..3855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13226 3773..3855 -
1622815501.3360033-CDS-L-elsbetiae_contig13226:4685..48421622815501.3360033-CDS-L-elsbetiae_contig13226:4685..4842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13226 4686..4842 -
1691682928.853042-CDS-L-elsbetiae_contig13226:4685..48421691682928.853042-CDS-L-elsbetiae_contig13226:4685..4842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13226 4686..4842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13226.2513.1prot_L-elsbetiae_contig13226.2513.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13226 3773..4842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13226.2513.1

>prot_L-elsbetiae_contig13226.2513.1 ID=prot_L-elsbetiae_contig13226.2513.1|Name=mRNA_L-elsbetiae_contig13226.2513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
FLWSSPDPLRHHVGGILPEWSALVRGLRRLQLLRLGRDQQHRHSGVPAGR
ARESCLLLGGKPQGGGSVHGFVGHAPQDLG
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mRNA from alignment at L-elsbetiae_contig13226:3772..4842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13226.2513.1 ID=mRNA_L-elsbetiae_contig13226.2513.1|Name=mRNA_L-elsbetiae_contig13226.2513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1071bp|location=Sequence derived from alignment at L-elsbetiae_contig13226:3772..4842- (Laminarionema elsbetiae ELsaHSoW15)
TTTTTATGGTCGTCCCCAGATCCTTTGCGGCATCACGTCGGTGGCATTCT CCCGGAGTGGTCGGCTCTTGTTCGCGGGCTACGACGACTACAACTGCTAC GTCTGGGACGTGACCAACAGCACCGGCATTCCGGCGTACCAGCTGGCAGG GCACGAGGTACGCTAAATACCCTTGCGTTTCTGGGCTGCTTTTTAGTTAA CGCCTCTTTGCTGTCGTCGGGTCGTCGGGACCGCCTCCGCGAATAATTCC TCTTGTCTGTCTACGTAGCAAATAATCGGTATTTAGTCTAAGCAGGTTTT TGTTCGGCGAAACATATGGGACAAAATTATGGAATCGGGGAATGTTTGGG GGGTCGGTGGTTAGGGTTAGGGTTTGGGTTACGGAACCCCTACTACTCTA TATCACATATAAACCAATATTCCCCGTTTTTTCTCGCGAAGGCAAGTCCG AAATAATAGACAGGGGTTCGGTAACCGTAACCGTAACCCTAACCCCAAGC CGACCGACCCCCCATCAGCCGATTCCATACTTACTTTATCCCATATGAAT ATTATTCCAGTGAAGCCTGCGAAGGCTATATACTACTGTGTCGTCGATTG CCCCTCTTGTGTGATGATGCCACTTACTTGATGTCGCCGCCTCTGGGGGT CTTGTGTAAATGTTTCCGGCTGCTTGCCCCCTCAGGCATGCATGTATGTA TATGCCGCATCCTCGTATATGCCTCATCCTCACATTCCTGACAGAACTGC GCAGTGAATGACATTGGTGTGTTTGTGTGTGTGTGTTGCACGATTTTTTG GGTGGAACGTGCTGCACTCACTGACTTGACTGACTGTGTGCTTTGTTGAC TCGGGGCGCAGTGGCGTTACAGTACAAACAGTAGTGTCTCGAAATGGCGG CTTAATGAAAACCCTTTCTTTGCCCCCCCCCCCTGGACGACCCGTCTCTC CCTCCCGTCCCCCCCGCTGCTTCTCAAAACATCTCAGAATCGTGTCTCTT GCTTGGGGGTAAACCCCAAGGGGGAGGCTCTGTGCACGGGTTCGTGGGAC ACGCTCCTCAAGATCTGGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13226:3772..4842-

>mRNA_L-elsbetiae_contig13226.2513.1 ID=mRNA_L-elsbetiae_contig13226.2513.1|Name=mRNA_L-elsbetiae_contig13226.2513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig13226:3772..4842- (Laminarionema elsbetiae ELsaHSoW15)
TTTTTATGGTCGTCCCCAGATCCTTTGCGGCATCACGTCGGTGGCATTCT
CCCGGAGTGGTCGGCTCTTGTTCGCGGGCTACGACGACTACAACTGCTAC
GTCTGGGACGTGACCAACAGCACCGGCATTCCGGCGTACCAGCTGGCAGG
GCACGAGTTTTTATGGTCGTCCCCAGATCCTTTGCGGCATCACGTCGGTG
GCATTCTCCCGGAGTGGTCGGCTCTTGTTCGCGGGCTACGACGACTACAA
CTGCTACGTCTGGGACGTGACCAACAGCACCGGCATTCCGGCGTACCAGC
TGGCAGGGCACGAGAATCGTGTCTCTTGCTTGGGGGTAAACCCCAAGGGG
GAGGCTCTGTGCACGGGTTCGTGGGACACGCTCCTCAAGATCTGGGCAAT
CGTGTCTCTTGCTTGGGGGTAAACCCCAAGGGGGAGGCTCTGTGCACGGG
TTCGTGGGACACGCTCCTCAAGATCTGGGC
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