mRNA_L-elsbetiae_contig13200.2502.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13200.2502.1
Unique NamemRNA_L-elsbetiae_contig13200.2502.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: A0A285M122_9HYPH (Methyl-accepting chemotaxis protein n=2 Tax=Cohaesibacter sp. ES.047 TaxID=1798205 RepID=A0A285M122_9HYPH)

HSP 1 Score: 155 bits (392), Expect = 4.390e-42
Identity = 93/136 (68.38%), Postives = 115/136 (84.56%), Query Frame = 1
Query:    1 AVPSASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAATGSAV 408
            AV SA+QEA+TNV+TVAAA EELS++I EI NQVA+S ++S  AVAQAD  N ++ GL EA ++IG+++++I+DIAEQTNLLALNATIEAARAGEAGKGFAVVA EVK LA+QT+KATE+IS QI  +Q  T SAV
Sbjct:  325 AVSSAAQEAATNVETVAAATEELSSSIGEIGNQVAKSANISSQAVAQADQTNAQINGLVEAAEKIGQVVNIIADIAEQTNLLALNATIEAARAGEAGKGFAVVAAEVKELASQTSKATEEISSQISTIQTETRSAV 460          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: UPI0005B25212 (methyl-accepting chemotaxis protein n=1 Tax=Azospirillum sp. B506 TaxID=137721 RepID=UPI0005B25212)

HSP 1 Score: 147 bits (371), Expect = 1.530e-41
Identity = 87/131 (66.41%), Postives = 114/131 (87.02%), Query Frame = 1
Query:   13 ASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAATGSA 405
            A+++AS NVQTVA+A +EL+ +I+EIS QV++ST+++  AV +AD+ N++++GL EA QRIG+++ LI+DIA QTNLLALNATIEAARAGEAGKGFAVVA+EVK+LANQTAKATE+I+ QI  MQ ATG A
Sbjct:   27 AAEQASVNVQTVASATDELTASISEISAQVSRSTTIAAQAVDEADATNRQVQGLVEAAQRIGDVVKLITDIASQTNLLALNATIEAARAGEAGKGFAVVASEVKNLANQTAKATEEIAGQILAMQQATGEA 157          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: UPI001D3811A0 (methyl-accepting chemotaxis protein n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001D3811A0)

HSP 1 Score: 155 bits (391), Expect = 3.230e-41
Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    1 AVPSASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAATGSAV 408
            AV SAS++ASTNVQTVAAAAEELS++IAEIS Q+  S+ V+ GA  +A   N  + GL +A QRIG++++LI +IA QTNLLALNATIEAARAGEAGKGFAVVA EVK+LA QTAKATE+IS Q+ +MQAATG AV
Sbjct:  546 AVASASEQASTNVQTVAAAAEELSSSIAEISRQLNASSQVAMGAAGKARETNTIVEGLADAAQRIGQVVNLIGEIASQTNLLALNATIEAARAGEAGKGFAVVATEVKNLAGQTAKATEEISSQVADMQAATGGAV 681          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: UPI0012BD7638 (methyl-accepting chemotaxis protein n=1 Tax=Curvivirga aplysinae TaxID=2529852 RepID=UPI0012BD7638)

HSP 1 Score: 152 bits (383), Expect = 1.130e-40
Identity = 91/135 (67.41%), Postives = 113/135 (83.70%), Query Frame = 1
Query:    4 VPSASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAATGSAV 408
            V SA+ EA+TNVQTVA+AAE+L+ +I EIS+QVA S  +S  A  QAD+  Q+++GLDEA Q+IG++M LIS+IA+QTNLLALNATIEAARAGEAGKGFAVVANEVK+LANQTA AT +I  QI ++Q+AT  AV
Sbjct:  350 VSSAANEAATNVQTVASAAEQLTASIREISHQVAISAQISTNATGQADAIAQQIKGLDEAAQKIGDVMGLISEIADQTNLLALNATIEAARAGEAGKGFAVVANEVKNLANQTANATGEIDMQITQVQSATKEAV 484          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: A0A7U6Y2S6_9PROT (Methyl-accepting chemotaxis protein n=1 Tax=Rhodospirillaceae bacterium LM-1 TaxID=2682548 RepID=A0A7U6Y2S6_9PROT)

HSP 1 Score: 146 bits (369), Expect = 1.590e-39
Identity = 90/135 (66.67%), Postives = 107/135 (79.26%), Query Frame = 1
Query:    4 VPSASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAATGSAV 408
            V  A+  A+ NVQTVAAAAEEL+ +I+E+  QVAQST+++Q AVA+A  AN  + GL  A  RIGE++ LI+DIA QTNLLALNATIEAARAGEAGKGFAVVANEVK LANQTAKA E+I + IG +Q AT  AV
Sbjct:  204 VAQAADSAAGNVQTVAAAAEELAASISEVRRQVAQSTAIAQAAVAEASKANDMIGGLSSAAGRIGEVVQLINDIASQTNLLALNATIEAARAGEAGKGFAVVANEVKHLANQTAKAAEEIVQLIGSVQGATTDAV 338          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: A0A2E7K207_9RICK (Methyl-accepting transducer domain-containing protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E7K207_9RICK)

HSP 1 Score: 145 bits (367), Expect = 3.690e-39
Identity = 88/130 (67.69%), Postives = 109/130 (83.85%), Query Frame = 1
Query:   19 QEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAATGSAV 408
            QEA  N++TVAAAAEEL+ +I EIS +V +ST V+Q AV  A ++N  + GL EA  +IG+++ LISDIA QTNLLALNATIEAARAGEAG+GFAVVA EVK+LA+QT+KATEDISRQIG++Q +TGSAV
Sbjct:  211 QEARHNLETVAAAAEELTYSINEISGRVQESTRVAQQAVEHAKASNTTVMGLSEASNKIGDVVKLISDIAGQTNLLALNATIEAARAGEAGRGFAVVATEVKNLADQTSKATEDISRQIGDIQNSTGSAV 340          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: H6SLY6_PARPM (Methyl-accepting chemotaxis sensory transducer n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SLY6_PARPM)

HSP 1 Score: 142 bits (359), Expect = 3.920e-39
Identity = 86/128 (67.19%), Postives = 104/128 (81.25%), Query Frame = 1
Query:   13 ASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAAT 396
            A+++AS NVQ  AAAAEELS +I EI  QV QS  +S  AV +A + N+ +RGL EA  RIGE++ LI+DIA QTNLLALNATIEAARAG+AGKGFAVVA EVKSLANQTA+AT++IS QIG +QA+T
Sbjct:   79 ATRDASANVQNAAAAAEELSVSIREIGRQVEQSNRLSSSAVTEARATNETIRGLAEASARIGEVVKLINDIASQTNLLALNATIEAARAGDAGKGFAVVAGEVKSLANQTARATDEISAQIGAVQAST 206          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: A0A6L9YVS2_9CYAN (Chemotaxis protein n=1 Tax=Moorena sp. SIO3E8 TaxID=2607830 RepID=A0A6L9YVS2_9CYAN)

HSP 1 Score: 142 bits (357), Expect = 4.510e-39
Identity = 86/128 (67.19%), Postives = 104/128 (81.25%), Query Frame = 1
Query:   13 ASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAAT 396
            A+QEAST+  T+AA+ EEL+ AI EIS+QVA S  V+  AV +++ A + ++ LD   Q IGEI+SLI  IAEQTNLLALNATIEAARAGEAGKGFAVVANEVK+LA QTAKATEDIS Q+GE+Q+ T
Sbjct:   62 AAQEASTSADTIAASMEELTTAIREISSQVATSAGVAVEAVTRSEEAGELVQTLDSGAQAIGEIVSLIKGIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKNLATQTAKATEDISNQVGEIQSVT 189          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: A0A2N3KM70_9PROT (Methyl-accepting chemotaxis protein n=2 Tax=Thalassospira marina TaxID=2048283 RepID=A0A2N3KM70_9PROT)

HSP 1 Score: 147 bits (371), Expect = 4.810e-39
Identity = 90/135 (66.67%), Postives = 111/135 (82.22%), Query Frame = 1
Query:    4 VPSASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAATGSAV 408
            V SASQE STN+ TVAAAAEELS +I EIS QV+QS+ V+ GAV +++   +++  L +A  +IGE++SLISDIA QTNLLALNATIEAARAG+AGKGFAVVANEVK+LA+QTAKATEDI  Q+  +Q AT +AV
Sbjct:  332 VSSASQEMSTNIDTVAAAAEELSASIGEISTQVSQSSQVANGAVTKSEDTYKKIELLADAANQIGEVISLISDIAAQTNLLALNATIEAARAGDAGKGFAVVANEVKTLASQTAKATEDIRTQVSGIQTATDTAV 466          
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Match: A0A418W2T7_9PROT (Methyl-accepting chemotaxis protein n=1 Tax=Azospirillum cavernae TaxID=2320860 RepID=A0A418W2T7_9PROT)

HSP 1 Score: 149 bits (375), Expect = 5.330e-39
Identity = 90/136 (66.18%), Postives = 110/136 (80.88%), Query Frame = 1
Query:    1 AVPSASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADSANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKSLANQTAKATEDISRQIGEMQAATGSAV 408
            AV +AS++A+TNVQTVAAAAEELS++IAEIS Q+  S+  + GA  +A   N  + GL  A +RIG+++ LI +IAEQTNLLALNATIEAARAGEAGKGFAVVA EVK+LA QTAKATE+IS Q+ +MQ ATG AV
Sbjct:  567 AVATASEQATTNVQTVAAAAEELSSSIAEISRQLNASSEAAVGAAEKAVQTNSIVEGLSHAAERIGQVVGLIGEIAEQTNLLALNATIEAARAGEAGKGFAVVATEVKNLAGQTAKATEEISAQVADMQTATGGAV 702          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13200.2502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A285M122_9HYPH4.390e-4268.38Methyl-accepting chemotaxis protein n=2 Tax=Cohaes... [more]
UPI0005B252121.530e-4166.41methyl-accepting chemotaxis protein n=1 Tax=Azospi... [more]
UPI001D3811A03.230e-4169.12methyl-accepting chemotaxis protein n=1 Tax=Azospi... [more]
UPI0012BD76381.130e-4067.41methyl-accepting chemotaxis protein n=1 Tax=Curviv... [more]
A0A7U6Y2S6_9PROT1.590e-3966.67Methyl-accepting chemotaxis protein n=1 Tax=Rhodos... [more]
A0A2E7K207_9RICK3.690e-3967.69Methyl-accepting transducer domain-containing prot... [more]
H6SLY6_PARPM3.920e-3967.19Methyl-accepting chemotaxis sensory transducer n=1... [more]
A0A6L9YVS2_9CYAN4.510e-3967.19Chemotaxis protein n=1 Tax=Moorena sp. SIO3E8 TaxI... [more]
A0A2N3KM70_9PROT4.810e-3966.67Methyl-accepting chemotaxis protein n=2 Tax=Thalas... [more]
A0A418W2T7_9PROT5.330e-3966.18Methyl-accepting chemotaxis protein n=1 Tax=Azospi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13200contigL-elsbetiae_contig13200:4774..5184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.1
Seed ortholog evalue5.9e-33
Seed eggNOG ortholog1150469.RSPPHO_02375
Hectar predicted targeting categoryother localisation
EggNOG free text desc.methyl-accepting chemotaxis protein
EggNOG OGs1MU9B@1224,2TQR7@28211,COG0840@1,COG0840@2
COG Functional cat.T
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.057697-CDS-L-elsbetiae_contig13200:4773..51841622815500.057697-CDS-L-elsbetiae_contig13200:4773..5184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13200 4774..5184 +
1691682928.2272828-CDS-L-elsbetiae_contig13200:4773..51841691682928.2272828-CDS-L-elsbetiae_contig13200:4773..5184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13200 4774..5184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13200.2502.1prot_L-elsbetiae_contig13200.2502.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13200 4774..5184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13200.2502.1

>prot_L-elsbetiae_contig13200.2502.1 ID=prot_L-elsbetiae_contig13200.2502.1|Name=mRNA_L-elsbetiae_contig13200.2502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
AVPSASQEASTNVQTVAAAAEELSNAIAEISNQVAQSTSVSQGAVAQADS
ANQEMRGLDEAGQRIGEIMSLISDIAEQTNLLALNATIEAARAGEAGKGF
AVVANEVKSLANQTAKATEDISRQIGEMQAATGSAVS
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mRNA from alignment at L-elsbetiae_contig13200:4774..5184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13200.2502.1 ID=mRNA_L-elsbetiae_contig13200.2502.1|Name=mRNA_L-elsbetiae_contig13200.2502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=411bp|location=Sequence derived from alignment at L-elsbetiae_contig13200:4774..5184+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGTTCCTTCAGCCTCCCAGGAGGCCTCGACCAACGTCCAGACCGTTGC CGCGGCGGCTGAAGAGCTATCCAATGCCATCGCCGAGATCAGCAACCAGG TCGCGCAGTCGACCTCTGTTTCGCAGGGCGCCGTGGCACAGGCCGATTCC GCCAACCAGGAAATGCGGGGCCTGGATGAGGCCGGTCAGCGCATTGGCGA GATCATGTCCTTGATCTCCGATATCGCCGAGCAGACCAATCTGCTGGCGC TGAATGCCACCATCGAGGCGGCCCGTGCGGGAGAGGCTGGCAAGGGCTTT GCCGTCGTGGCCAACGAAGTGAAGTCTCTTGCCAATCAGACGGCCAAGGC GACCGAGGACATCTCCCGCCAGATCGGCGAGATGCAGGCGGCAACTGGCA GCGCGGTCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13200:4774..5184+

>mRNA_L-elsbetiae_contig13200.2502.1 ID=mRNA_L-elsbetiae_contig13200.2502.1|Name=mRNA_L-elsbetiae_contig13200.2502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig13200:4774..5184+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGTTCCTTCAGCCTCCCAGGAGGCCTCGACCAACGTCCAGACCGTTGC
CGCGGCGGCTGAAGAGCTATCCAATGCCATCGCCGAGATCAGCAACCAGG
TCGCGCAGTCGACCTCTGTTTCGCAGGGCGCCGTGGCACAGGCCGATTCC
GCCAACCAGGAAATGCGGGGCCTGGATGAGGCCGGTCAGCGCATTGGCGA
GATCATGTCCTTGATCTCCGATATCGCCGAGCAGACCAATCTGCTGGCGC
TGAATGCCACCATCGAGGCGGCCCGTGCGGGAGAGGCTGGCAAGGGCTTT
GCCGTCGTGGCCAACGAAGTGAAGTCTCTTGCCAATCAGACGGCCAAGGC
GACCGAGGACATCTCCCGCCAGATCGGCGAGATGCAGGCGGCAACTGGCA
GCGCGGTCAGCGCAGTTCCTTCAGCCTCCCAGGAGGCCTCGACCAACGTC
CAGACCGTTGCCGCGGCGGCTGAAGAGCTATCCAATGCCATCGCCGAGAT
CAGCAACCAGGTCGCGCAGTCGACCTCTGTTTCGCAGGGCGCCGTGGCAC
AGGCCGATTCCGCCAACCAGGAAATGCGGGGCCTGGATGAGGCCGGTCAG
CGCATTGGCGAGATCATGTCCTTGATCTCCGATATCGCCGAGCAGACCAA
TCTGCTGGCGCTGAATGCCACCATCGAGGCGGCCCGTGCGGGAGAGGCTG
GCAAGGGCTTTGCCGTCGTGGCCAACGAAGTGAAGTCTCTTGCCAATCAG
ACGGCCAAGGCGACCGAGGACATCTCCCGCCAGATCGGCGAGATGCAGGC
GGCAACTGGCAGCGCGGTCAGC
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