mRNA_L-elsbetiae_contig1320.2497.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1320.2497.1
Unique NamemRNA_L-elsbetiae_contig1320.2497.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: D7G3P2_ECTSI (Similar to ankyrin 3, epithelial isoform e isoform 19 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P2_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 2.440e-97
Identity = 189/310 (60.97%), Postives = 219/310 (70.65%), Query Frame = 1
Query:    1 LHYAAKHRHPDSIDALVEAGADLEAEAGFGKGTALHIAAESPGCETTLLALLRHGAKVDPVRHGDKTPLLLAVEDDNVGVANLLVSAGAEVRAPLLLASESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMTGNFPFVDVLLKAGGDETTANNHGETPLDVVGRRKGTW-WLIFGP--PDYNIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPS-----AASSASDDSFISRENKKRVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            LHYAAKH     IDALVEAGADLEAE G G GTALH+AAE P  E TLLALLRHGAKVDP+R+G +TPL +AV+  NV  A  LVSAGA+VR  LL  S       M+L LL  GA VNTK ASDGNTPLHLAA       VDVLL+AG DET  N+ G+TPLDV+G +  T   L+FG    +  IR LLVNAP+DRA+RAWSRRGFF+LCRAFPERV+ QL  S DDRVN   S     A+    DD   SR N KRVATA E+ G + ER + A  +EG ATAFRAAMGRL+GL+ ++VFRT++EFV
Sbjct:  220 LHYAAKHSQLGVIDALVEAGADLEAEGGLGVGTALHVAAEFPDSEATLLALLRHGAKVDPIRNGSETPLSVAVKARNVCAAKALVSAGADVREHLLRESVECSQHDMLLALLGRGAHVNTKGASDGNTPLHLAAEKSFRVKVDVLLQAGADETAVNHKGQTPLDVIGLKTDTMRTLMFGDHREEDAIRTLLVNAPKDRANRAWSRRGFFVLCRAFPERVQQQLVLSGDDRVNVVCSNVCSQASCGNDDDRSDSRNNAKRVATAEEKEGVE-ERPSAAHVEEG-ATAFRAAMGRLIGLQVEVVFRTVLEFV 527          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: A0A6H5L850_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L850_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 5.440e-52
Identity = 137/305 (44.92%), Postives = 169/305 (55.41%), Query Frame = 1
Query:    1 LHYAAKHRHPDSIDALVEAGADLEAEAGFGKGTALHIAAESPGCETTLLALLRHGAKVDPVRHGDKTPLLLAVEDDNVGVANLLVSAGAEVRAPLLLASESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMTGNFPFVDVLLKAGGDETTANNHGETPLDVVGRRKGTW-WLIFGP--PDYNIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPSAASSASDDSFISRENKKRVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            LHYAA       IDALVEAGADLEAE G G  TA H                     VDP+R+G +T L +AVE  NV  A  L SAGA+VR   L  S    S+ M++ +L  GA VNTK ASDGNTPLHLAA       VDVLL+AG  ET  N++G+TPLDV+G    T   L+FG    +  IR LLVNAP++                   ER  + ++  +DD  +D              +R N KRVATA E GG +G   + A  +EG ATAFRAAMGRL+GLE ++VFRT++EFV
Sbjct:  158 LHYAANQSQLGVIDALVEAGADLEAEGGLGVSTAFH---------------------VDPIRNGSETSLSVAVEAHNVCAAKELASAGADVREHPLRESAEKWSNHMLIAMLGHGAHVNTKGASDGNTPLHLAAEKSFRVKVDVLLQAGAHETAVNHNGQTPLDVIGLNTDTMRTLVFGNHREEDAIRTLLVNAPKE----------------GRIERGLVGVSFGKDDEPSD--------------NRSNAKRVATAKETGGVEGP-PSDAPVEEG-ATAFRAAMGRLIGLEVEVVFRTVLEFV 409          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: D7G0W2_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.580e-31
Identity = 111/299 (37.12%), Postives = 148/299 (49.50%), Query Frame = 1
Query:   55 AGADLEAEAGFGKGTALHIAAESPGCETTLLALLRHGAKVDPVRHGDKTPLLLAVEDDNVGVANLLVSAGAEVRA---------PLLLASESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMT----GNFPFVDVLLKAGGDETTANNHGETPLDVVGRRKGTWWLIFGPPDY--NIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPSAASSASDDSFISRENKKRVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            AGAD+    G    + L  +  S G + T   L R     +    G  T L  A  + N    +LLV AGA + A         PL LA+  + + A+I  L R GADV+ +    GNTPLH+AA       ++  VD LLKAG DET  +  G+TPLDV+  R     L+    +     R++LVNAP+DRA RAWSRR FF++CRA P+RVRL +                   DD+  S   KK +A AA   G  G R  GA  D   A  F+ AM  L+ L+ D +FR I+ F+
Sbjct:    3 AGADVNVRDGSNGYSPLDCSVRSDGMDLTRQVLQRGAIATESSSDGC-TALHWAGWNMNASAIDLLVGAGANLEAKIAADAEATPLHLAARQAGNAAVIEALARHGADVHAQETPSGNTPLHVAAQNCTTESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAAGDLMGASVNEAERTRSVLVNAPKDRAQRAWSRRSFFVMCRAHPDRVRLTVV------------------DDTTTSPRAKKTMAAAATAVG-SGRR--GANRDS--ADNFQRAMRSLIRLKEDGLFRKIVAFL 277          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: A0A6H5KHT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.140e-18
Identity = 101/327 (30.89%), Postives = 131/327 (40.06%), Query Frame = 1
Query:   43 ALVEAGADLEAEAGFGKGTALHIAAESPGCETTLLALLRHGAKVDPVRHGDKTPLLLAVEDDNVGVANLLVSAGAEVRAPLLLASESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAA-MTGN--------------------------------------FPFVDVLLKAGGDETTANNHGETPLDVVGRRKGTWWLIFGPPDYNIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPSAASSASDDSFISRENKKRVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            AL+ AGAD+    G    + L  A  S G + T   L R     +    G  T L  A  + N    +LLV AG                           AD+  K A +  TPLHLAA   GN                                      +  VD LLKAG DET  +  G+TPLDV+  R     ++      + R++LVNAP+DRA RAWSRR FF++CRA P R RL +     D    +PSA               K++AT A      G    G   D   A  F+ AM  LM L+ D +FR I+ F+
Sbjct:  207 ALMAAGADVNVRRGSNGYSPLDCAVRSGGMDLTRQVLQRGAIATESASDGC-TALHWAGWNMNASAVDLLVGAG---------------------------ADLEAKLADEEVTPLHLAARQAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNCTTESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAVGDVVGANAAEHTRSMLVNAPKDRAQRAWSRRSFFVMCRAHPNRARLTVV----DGTTTSPSA---------------KKLATEATA---VGSGWRGTNWDSR-ADIFQRAMRSLMLLKEDGLFRKIVAFL 482          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.150e-15
Identity = 79/239 (33.05%), Postives = 113/239 (47.28%), Query Frame = 1
Query:  226 DNVGVANLLVSAGAEVRA---------PLLLA-SESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMTGNFPFVDVLLKAGGDETTANNHGETPLDVVG--RRKGTWWLIFGPPDYNIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPSAASSASDDSFISRENKKRVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            D      +L+ AGA+V           PL LA +    S   I  LL GGA++N + A D +TPLH+A        V++LL+ G DE   NN G+TP DVVG   +           +  I  +L  AP   ADR+W RRG+ +L R+ P RV +                A+ +S  S ISR N      A  R  G+G       T++ +    R  +GRL+GLEA+ +FR ++ F+
Sbjct:  295 DKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGD-DTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAP---ADRSWRRRGWLVLSRSCPTRVHI----------------ANGSSSSSSISRINGNSAKVA--RVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.960e-14
Identity = 82/243 (33.74%), Postives = 112/243 (46.09%), Query Frame = 1
Query:    1 LHYAAKHRHPDSIDALVEAGADLEAEAGFGKGT--ALHIAAESPGCETTLLALLRHGAKVDPVRHGDKTPLLLAVEDDNVGVANLLVSAGAEVRA-------PLLLASESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMT----GNFPFVDVLLKAGGDETTANNHGETPLDVVGRRKGTWWLIFGPPDYN-IRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVN 687
            LH A ++ H  ++ AL+ A  D          +   L +AA+  G    L A+L+HG  V+    G  T L +A  ++ V   ++LV AGA V         P L A  +   +A  L L + G+++   R   G TPL +AA      G    VD+LL+ G DET  N  G T  +VVG             D   +R LL NAP    DRAW RRGF +LCRAF  + R   A S +   N
Sbjct:   75 LHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQK-GDACVLRAILQHGVDVNRRTDG-YTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAA-LALYKHGSNIEA-RDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAP---VDRAWRRRGFLVLCRAFWIKARRLRAASSNASSN 310          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: A0A6H5JU78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU78_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.660e-13
Identity = 84/293 (28.67%), Postives = 130/293 (44.37%), Query Frame = 1
Query:   76 EAGFGKGTALHIAAESPGCETTLLALLRHGAKVDPVRHGDKTPLLLAVE-----DDNVGVANLLVSAGAEVRAPLLLASESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMTGNFPFVDVLLKAGGDETTANNHGETPLDVVGRRKGTWWLIFGPPDYNIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPSAASSASDDSFISRENKKRVATA-----AERGGG------KGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            +AG      +H+AA   G +  +LA++  G  ++ + +  + PLLLA+      ++      +L  AGA++ A L              TL + GA VN+K  ++  T L  A   GN     +LL  GGDE   ++ GET + +V ++         PP   +  LL  AP+DRA   W RRGF +L R  P+RVRL +         + P AA+ A++     +  ++R +T         GGG       G R       EG    F      +M L  + VFR I+ F+
Sbjct:  105 QAGSNGNFPIHLAA-CHGLDEVVLAVVEKGIDLNCLNNKREIPLLLALLRIAACENKAAAIRVLFEAGADIEARL--------------TLFQLGAKVNSKE-NERITSLSSACSFGNHDAAGLLLSWGGDENAMDSEGETVVFMVMQQIAEAPASVRPPLERLSRLLARAPQDRA---WRRRGFLVLGRVHPDRVRLAV---------EIPPAAADATEQP--QQRPRRRASTGQVEVDGTNGGGGXTGASSGVRAGIEAVHEGTVAGFGGVSAWMMALTEEGVFRRIVGFL 367          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.160e-12
Identity = 74/240 (30.83%), Postives = 114/240 (47.50%), Query Frame = 1
Query:  226 DNVGVANLLVSAGAEVRA----------PLLLA-SESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMTGNFPFVDVLLKAGGDETTANNHGETPLDVVGRRK--GTWWLIFGPPDYNIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPSAASSASDDSFISRENKKRVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            D      +L++AGA+V A          PL +A      S   I  LL GGADVN +   D  TPLH A    +   V++LL+ G DE   ++   TP D++G     G+           I  +L  AP   ADR+W RR + +L R+ P RV++    + ++R   +  ++SS       S  N  ++A  +    G GER     T++ +    R  + RL+GLEAD +FR ++ F+
Sbjct:  293 DKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIED-RTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAP---ADRSWRRRSWLVLSRSCPTRVKI----ANENRSGSSVGSSSS-------SNGNSTKLARFSGEDSGGGERE----TEDQMMVDLRGLVTRLVGLEADGLFRLVVGFL 513          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: A0A6H5JN84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN84_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.060e-12
Identity = 106/368 (28.80%), Postives = 142/368 (38.59%), Query Frame = 1
Query:    1 LHYAAKHRHPDSIDALVEAGADLEAEAGFGKGTALHIA----------AESPGCE--TTLLALLRHGAKVDP-----------------VRHG--------------------------DKTPLLLAVEDDNVGVANLLVSAGAEVRAPLLLASESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMTGNFPF--------VDVLLKAGGDETTANNHGETPLDVVGRRKGTWWLIFGPPDYNIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPSAASSASDDSFISRE---NKKRVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            LH AA +   D ID L+ AGA +EA     K T L +             S G +    ++ LL+HGA  DP                 VR G                           KT L +A EDDN      L+SAGA                          A +N         PLHLAA      F        +D+LL+ G DE   N+ G TP+  V RR G    +      ++  +    PRD+A   W RRG+ +LCRA P RVRL        + +DA +   S +  S  +R         +T+    G  G    G+L  E +A    A + +++GL  D VFRTIMEFV
Sbjct:  524 LHRAAMYNKVDGIDLLISAGAIIEAPDNH-KSTPLAVTFREAVYRWKKEHSCGLQDFAAMITLLKHGA--DPNIGNIQEGCPHSLLWYFVRCGCPISVFRELLAAGPNLDADTNVQTKRGKTALHMAAEDDNGVCIEALISAGAXXXXXXXX-----------XXXXXXXATIN---------PLHLAAARDQRDFGDSAVPTTIDLLLRWGADENAVNSAGRTPV-TVWRRNGYVHRLPAASRTSVPKMFHWIPRDKA---WRRRGWLVLCRALPNRVRL--------KADDAGTC--SGAGQSLRARRVGAGSGSCSTSVPPVGKAGGVPVGSLPREKIAGGLSALVAKVVGLHEDGVFRTIMEFV 854          
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.570e-11
Identity = 88/299 (29.43%), Postives = 127/299 (42.47%), Query Frame = 1
Query:   46 LVEAGADLEAEAGFGKGTALHIAAESPGCETTLLALLRHGAKVDPVRHGDKTPLLLAVEDDNVGVANLLVSAGAEV-------RAPLLLASESSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMTGNFPFVDVLLKAGGDETTANNHGETPLDVVGRRKGTWWLIFGPPDYNIRALLVNAPRDRADRAWSRRGFFMLCRAFPERVRLQL-----APSQDDRVNDAPSAASSASDDSFISRENKKRVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIMEFV 906
            L+  G +L+  A  G  T L ++ + P   T LL    HGA  +       T L  A E++N      L SAG          R P  LA+    S +++  LLR   D    R S   T             +D+LL+ G DE   ++ G TPL V    + T+ L +     +++ +   APRD+    W +RG+ +LCRAFP  VRL+       P+    V      A S S  S +    + R          K   +AG L+         A + +++GL  D VFRTIMEFV
Sbjct:  580 LLAVGPNLDVRADDGY-TPLTVSQDHPELFTELLL---HGADTNVQTKRGATALHKAAENNNGVCIEALTSAGTSTSIKDNDGRTPFQLAT-ICHSRSVMRMLLRSAHDRCDSRDSAMATT------------IDLLLRWGADENAVDSLGNTPLTVWRENESTYTLSWANKQ-SVKKIFKRAPRDKR---WRQRGWLVLCRAFPNSVRLKADSDGTCPAAGRSVRARSVRAGSWSGSSSVPPFGEARGGPVGPLPREKHGVIAGGLS---------ALVAKVVGLHEDGVFRTIMEFV 848          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1320.2497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3P2_ECTSI2.440e-9760.97Similar to ankyrin 3, epithelial isoform e isoform... [more]
A0A6H5L850_9PHAE5.440e-5244.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0W2_ECTSI1.580e-3137.12Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KHT9_9PHAE3.140e-1830.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQN0_ECTSI1.150e-1533.05Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D7G6X8_ECTSI1.960e-1433.74Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JU78_9PHAE2.660e-1328.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI1.160e-1230.83MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5JN84_9PHAE7.060e-1228.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN15_9PHAE8.570e-1129.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1320contigL-elsbetiae_contig1320:1366..4187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue7.3e-84
Seed eggNOG ortholog2880.D7G3P2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1676
Cds size909
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1320.2497.1prot_L-elsbetiae_contig1320.2497.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1320 3279..4187 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.1822135-UTR-L-elsbetiae_contig1320:1365..21171622815498.1822135-UTR-L-elsbetiae_contig1320:1365..2117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1320 1366..2117 -
1691682927.9291334-UTR-L-elsbetiae_contig1320:1365..21171691682927.9291334-UTR-L-elsbetiae_contig1320:1365..2117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1320 1366..2117 -
1622815498.1951904-UTR-L-elsbetiae_contig1320:3263..32781622815498.1951904-UTR-L-elsbetiae_contig1320:3263..3278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1320 3264..3278 -
1691682927.9401252-UTR-L-elsbetiae_contig1320:3263..32781691682927.9401252-UTR-L-elsbetiae_contig1320:3263..3278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1320 3264..3278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.2062573-CDS-L-elsbetiae_contig1320:3278..41871622815498.2062573-CDS-L-elsbetiae_contig1320:3278..4187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1320 3279..4187 -
1691682927.9485247-CDS-L-elsbetiae_contig1320:3278..41871691682927.9485247-CDS-L-elsbetiae_contig1320:3278..4187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1320 3279..4187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1320.2497.1

>prot_L-elsbetiae_contig1320.2497.1 ID=prot_L-elsbetiae_contig1320.2497.1|Name=mRNA_L-elsbetiae_contig1320.2497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=303bp
LHYAAKHRHPDSIDALVEAGADLEAEAGFGKGTALHIAAESPGCETTLLA
LLRHGAKVDPVRHGDKTPLLLAVEDDNVGVANLLVSAGAEVRAPLLLASE
SSRSDAMILTLLRGGADVNTKRASDGNTPLHLAAMTGNFPFVDVLLKAGG
DETTANNHGETPLDVVGRRKGTWWLIFGPPDYNIRALLVNAPRDRADRAW
SRRGFFMLCRAFPERVRLQLAPSQDDRVNDAPSAASSASDDSFISRENKK
RVATAAERGGGKGERLAGALTDEGVATAFRAAMGRLMGLEADIVFRTIME
FV*
back to top

mRNA from alignment at L-elsbetiae_contig1320:1366..4187-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1320.2497.1 ID=mRNA_L-elsbetiae_contig1320.2497.1|Name=mRNA_L-elsbetiae_contig1320.2497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2822bp|location=Sequence derived from alignment at L-elsbetiae_contig1320:1366..4187- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACTACGCTGCCAAACATAGGCATCCAGACTCAATCGACGCTCTTGT CGAGGCAGGGGCCGATCTCGAAGCTGAGGCCGGCTTTGGAAAGGGCACCG CTCTCCACATCGCGGCTGAATCCCCTGGCTGCGAGACCACGCTGCTTGCT CTGCTTCGGCACGGCGCTAAGGTCGACCCTGTGCGGCACGGCGATAAAAC GCCCCTCCTGTTGGCAGTCGAGGATGACAACGTGGGAGTGGCAAACTTGC TTGTATCAGCCGGTGCGGAAGTGAGAGCCCCTCTGCTTTTGGCCTCGGAG AGCTCAAGGTCGGATGCAATGATTCTCACCCTGTTGAGGGGCGGCGCCGA CGTCAACACGAAACGAGCGTCCGACGGAAATACCCCGTTACACCTAGCCG CTATGACAGGAAATTTTCCCTTCGTTGACGTCCTTTTGAAAGCGGGTGGG GATGAAACCACTGCCAACAACCACGGTGAAACCCCGTTAGATGTAGTTGG ACGCAGAAAAGGCACGTGGTGGTTGATCTTCGGTCCCCCCGACTACAATA TCCGGGCTCTGCTGGTGAACGCACCGAGGGACAGGGCGGACAGGGCGTGG TCTCGTCGGGGTTTCTTCATGCTGTGTCGCGCGTTCCCGGAAAGGGTGCG GCTGCAGCTGGCACCGTCTCAGGACGACAGGGTCAACGACGCACCCTCAG CAGCATCCTCCGCAAGCGATGATTCCTTCATCAGCCGCGAGAACAAGAAA CGAGTAGCCACCGCAGCGGAGAGGGGCGGTGGTAAGGGGGAACGACTGGC AGGCGCGCTAACAGACGAGGGCGTCGCGACAGCGTTTCGTGCTGCGATGG GCAGGCTTATGGGGCTCGAAGCAGACATCGTATTCCGGACGATCATGGAG TTCGTGTGAGGGTGCATGCAGCAGGTGAGACTTGACGGCTTTCATGTGCG TGGAGCCGTGAAACTAAAACGCGTGTACACGTGTACACCTTCCATGTTGT TTGCGCGTGCTTCACGAGCGTTCAACGTTACGGAGTCGTTGTTTCAAGCA GTTCTGTGAGATAAGTGGCGATAACACCCCCTCGCCCTCACCGCTCCGCC TTTTTTACCGAGTATGCGGCACAAAATCCGGGTTTGAGGGACGCTGGATC CATCTGATGCACACCGCCAGTGCTCTTGTTCGATGCGGATATTTGACGAC TTTTGCACAAGAATGCACCTGAGGGCAATATTATCCCGCCTGAAAAACTA GCGTTTCGGCAAAGAACTGGGTCGCTTTAACGAGGAGGAAGATTTGTGCA CCGCAGGATCGAAGTCGTTTTAGAACACATCTCTACATACAGCAGTAAGA TCGCGGAAGCAAGCCGAGCTGTTCGTTGTGGGAAAAAACATCGAAAATTC TGAATCCCTGACAAGCTTGTGTCTCACCTTTGAGGAGGAGAAAGCACCTG GCGACTTGGTCGCAGATATATTTACCCATGCTTTGTTGTTTGCCGGACCG TTCGACTGGCTTTTGCCCTCTCGAACGAGTCCAAATGACCTTCCATGTCC TGTCGATGATCAGTGAAATATAAAGACTTCGCCGTTATAGGAAGCTGCTA ATACCTCGAGTACCGCTCGCACCACAGTCATGGGAAGTGCCTGGTATATC TGACATCGACTGTCACATAGCTTCCGATGCCATCCCCTGAGGTAGTCGGA CGGCGCCCTGCTCTCCTCTTGCCCTCGGAAAACTACATGTTGCCCAAAAC TATTGCTATGTAGTGTGTGTGTGTGAGAAAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGACGCTTTGTGTAAAAGCGAGAGAGATGTTTCAAAGTTTTGC GATGACCTCTCCACCCCCTCTCTCTCCACAAATGCGTGGCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCCACGCATGCTTGCATCATGTGTTCCGGGTC GAGCCGCCACCCGTTTAACCCCCCACACACACACACCCTGTCATTCTCCA ACGGTTACGTTTCACCGCCGACCCATCTTGTTTGTTCCTCTGTTTCTGTC TGGTCGTGTTTGTGCACCAGGATCGGGATTGGCCGGTCTTGCTGGCGCCC ATGTCGAAGGTCGGGGCGATGGGGTTTGGCTATGGTGTACACCATGGACA CGACGGAGGCTCGGTGCCCAGATTGGGCACAGTTCTGCGGTAGACACCTT GCTGCGTCATCGTATGGGAAGGAAGTACGTACACCATGTGTAGTCCTTTC CTGTTTATCCCATCCTCCCTTAAGAAGGAGCACGGTGCCTACCTACTACT TCGTACGTACTTTTCATGATTTTTCTTCGGCAGCATATATGCTACTGATA ATATTGTTTTGAGTGTGCCTTGGGATGGGTTACGTTTTGGTACCAGCTCG GCGGGCTCGATCACCAGTTTGAGTGCAGAAAAGTGCAAAATATGGTGCCG GGGTCAACAAGAGTGTTTGCGTTGCTGTGCTCTCGGTGGTGCCCTCCCTT GGTATTTCCTTATTTAAGGTTGTACACCTTTCTGCTGCTCCGCGCGCTAC TTGTTTCTCACCTTTGCCTTGAAAGACTCTTGCCCTGGAGATGGCGTTCC GTTAAGTACTTTAAGAGCACAAGTTTGGAGTCGGTGGTTGCATTTTCTCC CACAGGAAATAGAGCATCCCGGACCAGTGTCGCGCGCGTTCAAAGGGGTT TTCACGATCTTAAAGCTTAAAGGCGCAAGATCTCCGCTTCCATGGCGGAG CTGGTTTCGGTGAGATTTTCTTGGGTGCGAGGGCTGCATCATATGCGCGC TGAGACAAGGCGTCGTAAGCTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1320:1366..4187-

>mRNA_L-elsbetiae_contig1320.2497.1 ID=mRNA_L-elsbetiae_contig1320.2497.1|Name=mRNA_L-elsbetiae_contig1320.2497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1818bp|location=Sequence derived from alignment at L-elsbetiae_contig1320:1366..4187- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACTACGCTGCCAAACATAGGCATCCAGACTCAATCGACGCTCTTGT
CGAGGCAGGGGCCGATCTCGAAGCTGAGGCCGGCTTTGGAAAGGGCACCG
CTCTCCACATCGCGGCTGAATCCCCTGGCTGCGAGACCACGCTGCTTGCT
CTGCTTCGGCACGGCGCTAAGGTCGACCCTGTGCGGCACGGCGATAAAAC
GCCCCTCCTGTTGGCAGTCGAGGATGACAACGTGGGAGTGGCAAACTTGC
TTGTATCAGCCGGTGCGGAAGTGAGAGCCCCTCTGCTTTTGGCCTCGGAG
AGCTCAAGGTCGGATGCAATGATTCTCACCCTGTTGAGGGGCGGCGCCGA
CGTCAACACGAAACGAGCGTCCGACGGAAATACCCCGTTACACCTAGCCG
CTATGACAGGAAATTTTCCCTTCGTTGACGTCCTTTTGAAAGCGGGTGGG
GATGAAACCACTGCCAACAACCACGGTGAAACCCCGTTAGATGTAGTTGG
ACGCAGAAAAGGCACGTGGTGGTTGATCTTCGGTCCCCCCGACTACAATA
TCCGGGCTCTGCTGGTGAACGCACCGAGGGACAGGGCGGACAGGGCGTGG
TCTCGTCGGGGTTTCTTCATGCTGTGTCGCGCGTTCCCGGAAAGGGTGCG
GCTGCAGCTGGCACCGTCTCAGGACGACAGGGTCAACGACGCACCCTCAG
CAGCATCCTCCGCAAGCGATGATTCCTTCATCAGCCGCGAGAACAAGAAA
CGAGTAGCCACCGCAGCGGAGAGGGGCGGTGGTAAGGGGGAACGACTGGC
AGGCGCGCTAACAGACGAGGGCGTCGCGACAGCGTTTCGTGCTGCGATGG
GCAGGCTTATGGGGCTCGAAGCAGACATCGTATTCCGGACGATCATGGAG
TTCGTGTGACTGCACTACGCTGCCAAACATAGGCATCCAGACTCAATCGA
CGCTCTTGTCGAGGCAGGGGCCGATCTCGAAGCTGAGGCCGGCTTTGGAA
AGGGCACCGCTCTCCACATCGCGGCTGAATCCCCTGGCTGCGAGACCACG
CTGCTTGCTCTGCTTCGGCACGGCGCTAAGGTCGACCCTGTGCGGCACGG
CGATAAAACGCCCCTCCTGTTGGCAGTCGAGGATGACAACGTGGGAGTGG
CAAACTTGCTTGTATCAGCCGGTGCGGAAGTGAGAGCCCCTCTGCTTTTG
GCCTCGGAGAGCTCAAGGTCGGATGCAATGATTCTCACCCTGTTGAGGGG
CGGCGCCGACGTCAACACGAAACGAGCGTCCGACGGAAATACCCCGTTAC
ACCTAGCCGCTATGACAGGAAATTTTCCCTTCGTTGACGTCCTTTTGAAA
GCGGGTGGGGATGAAACCACTGCCAACAACCACGGTGAAACCCCGTTAGA
TGTAGTTGGACGCAGAAAAGGCACGTGGTGGTTGATCTTCGGTCCCCCCG
ACTACAATATCCGGGCTCTGCTGGTGAACGCACCGAGGGACAGGGCGGAC
AGGGCGTGGTCTCGTCGGGGTTTCTTCATGCTGTGTCGCGCGTTCCCGGA
AAGGGTGCGGCTGCAGCTGGCACCGTCTCAGGACGACAGGGTCAACGACG
CACCCTCAGCAGCATCCTCCGCAAGCGATGATTCCTTCATCAGCCGCGAG
AACAAGAAACGAGTAGCCACCGCAGCGGAGAGGGGCGGTGGTAAGGGGGA
ACGACTGGCAGGCGCGCTAACAGACGAGGGCGTCGCGACAGCGTTTCGTG
CTGCGATGGGCAGGCTTATGGGGCTCGAAGCAGACATCGTATTCCGGACG
ATCATGGAGTTCGTGTGA
back to top