mRNA_L-elsbetiae_contig1319.2494.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Match: A0A6H5KP28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP28_9PHAE) HSP 1 Score: 869 bits (2245), Expect = 1.550e-288 Identity = 584/1229 (47.52%), Postives = 707/1229 (57.53%), Query Frame = 1
Query: 1 GLQDLDSMWRLLMMEDEAACITCPVQPVDPFESFLAAAQFLEYALWDNIGESHFAVQTACRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLDSFSKTAAGVPALILLDTAPEEGLLVLLRQRDFDVRACGVTGGVTCVPNSWLEFYAQRRRWYAGSMLAVASHLTGKECYFQLAWCRWIISLYAVVANLYLHSGLAFLPVLLAQGIYRIVYRMIDFG---DRWDRGESERQRLGNDSDDSQPADLEWLIFGLVWAFLLLNVGVYLTRSQDHLWMWINVTSVLWMALCLVTLLGSGVAVSPFIPIAVIVVPVVWAGLN--KKMPGHWCTLVVAAVPFVLLTAVNSVLVFLYALATLDSTEWGTRDVGFFDSGVSKSRAASMRQRKLCILFTVVAACGGVGILVMLYPAHTLLPVVVGIPVAAYALKLSLVIIPARLEKSRQSILLGDVGHRPLSLRRNMSELAPIHGRAPEYHTDRHGPSSRSSGRSRKGAL--KDPNESSSHIT-KDGTPSPGDMDVSTPGAFFAFPAGTSA-GSETMSGPAPGRPGHRXXXXXXXXXXXXXXXXXXXXGXIGXGS-VVGAQSTHSAGSRHSSAGSRGGRKTRSXXXXXXXXXXXXXXXXXXXXXXXXPATPAEGVPDALLTGIAGKGGRVARVAGAGIRA--------------------GADVQGNVPKAPKGARRTGFAQFLPPKGGT-GVLTDGTPPSSRTASVRSTKEEIRNAWGLKQETLESDDDSIRLDATDMKAFQS-----------GGVPSLPRDLGVEAALGPPPKAQAKRAXXXXXXXX-----------------------------------------------------------------------------------------------------DAGVKRYSWALKRPSTSEFDVPPRTPERG-RGGIRTSLARCSKGSQDDIQCPSPAAINAILNSRIGATRRGDEVDEYARGV--VRGSRRQSSGAALAGIRAAWGTSMGGSQDDIGISSPS---------IGGVYSTSIVDDYDFSASEAENVE-------LNTTFRRPVGGGTLAGARAAWGTSMGGSQDDMACPRPMEADVARNSRTGATSYRASFQPDDDSGSELDDY-SRSLVLGVASSRRRPTGN-TLAGVRAAWGASVGDSQDDMACPSPATANAILNSRAGAVYSRGGDG--------GSSTSAGIRNGR 3171
GLQDL+SMWRLLM E+E AC+TCPV+PV P SFLAA+Q LE+ALWDN+GESHF VQT CRGAQCMFKYRCLVEDGRLA+PP+GEGAMPPLL+ FSKTAAG+PALILLD++P EGLLVLLRQR FDVR+CG GVTCVP SW+EFYAQRRRWYAGS++AV+SHLTGKE YFQ W RWIIS YA VANL+LHSGLA +PVLLA+G++++V G D W+ SE Q D Q +L+W++F LVW F LLNVG YLTRSQD LWMWINVTSVLWM LC TL+GSG AVSP IP+ ++++P V AGLN + W L VAAVPFVLLT VNSVLVFLYALATLDSTEWGTRDVG FDSGVSK RAASMR+RKLCILFT +A +G+++M+ + LP+V+GIP AAY LKL LV++PA+LE+SRQ+ LLGDVG RPLSLR +++ELAPI+G PE+ TDRH R+ G + L K P ++ SH+T +DGTPSPG MDVST G+FF AG S G + SGPA GHR X X XG + + S H+ GSR SSA G XXXXXXXXX + + V + G+ + + G+G+RA G D G A KGARRTGFA+FL K G+ DG P++ S K EIR AWGL++ T ESDD +T+M +S G S P D A PPP +A+ X D V+RYSWA +PSTSEFD P P+ R + S D + S AAIN LN+R+GAT + D G V RR S LAGIRAAWGTS+GGSQDDI P +G VY+T I+++ + + SE E V+ + RR + GTLAG RAAWG+S+ GSQ+D+ + +V N R G RA DD+S SE + SRSL+ G+A+ RRRP G TLAG+RAAWG S+G+SQDD+ACPSPAT+N LNSRAG VYSRGGD G AG+RNGR
Sbjct: 192 GLQDLESMWRLLMAEEEVACVTCPVRPVHPMGSFLAASQSLEFALWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAEPPIGEGAMPPLLNPFSKTAAGLPALILLDSSPSEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIEFYAQRRRWYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANLFLHSGLALMPVLLAKGLHQLVLYDESRGESDDDWNDEWSEWQEESADDGIDQHTNLDWIVFALVWGFFLLNVGFYLTRSQDQLWMWINVTSVLWMLLCGGTLVGSGFAVSPLIPVMLVIIPPVLAGLNTARGTIATWRYLCVAAVPFVLLTTVNSVLVFLYALATLDSTEWGTRDVGSFDSGVSKPRAASMRRRKLCILFTTMATSCALGVVMMISSSLIFLPIVIGIPSAAYLLKLLLVVVPAKLERSRQTYLLGDVGSRPLSLRGSVAELAPINGCPPEFSTDRHSGGDRNGGGIGQKGLGPKSPAKTGSHVTAEDGTPSPGGMDVSTSGSFFG--AGMSVVGDSSASGPAADGLGHRRHGSKSASISSGFAGVAGVXXXXXXGGDICWSNSAHATGSRQSSAAGMAGXXXXXNTSGKDGSAAGRPRAXXXXXXXXXXXS-RQDVSETAAMATQGRNRKTSSALGSGLRASLKRMNSRGRSSSTGPSSAVGDDAHG---VAIKGARRTGFARFLSAKDSVEGITLDGAKPTT------SKKAEIRKAWGLRKATSESDD------STEMFVMESLNRKLNPHGIRGNSSSCPPDSSF--AESPPPAFRARNTALAAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMGAPADGEVRRYSWACPQPSTSEFDAPVSKPDAAARAAEQNRRLSWGNSSMDSEEFDSQAAINTKLNARVGATSIRSQRDAIGSGFADVGNRRRPPSTGTLAGIRAAWGTSIGGSQDDIACRLPETKTSTRNSRLGAVYATGIIEEDEENESEMEEVDPRLFAPGVQGNRRRSLSAGTLAGIRAAWGSSLDGSQEDIPYTSTDKMNVIHNPRVGVNGVRAHIL-DDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATSNTRLNSRAGVVYSRGGDRYASGHVVRGQPMPAGMRNGR 1399
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Match: D8LBH7_ECTSI (Chitin synthase 1, chs-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH7_ECTSI) HSP 1 Score: 405 bits (1042), Expect = 4.000e-127 Identity = 194/271 (71.59%), Postives = 224/271 (82.66%), Query Frame = 1
Query: 1 GLQDLDSMWRLLMMEDEAACITCPVQPVDPFESFLAAAQFLEYALWDNIGESHFAVQTACRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLDSFSKTAAGVPALILLDTAPEEGLLVLLRQRDFDVRACGVTGGVTCVPNSWLEFYAQRRRWYAGSMLAVASHLTGKECYFQLAWCRWIISLYAVVANLYLHSGLAFLPVLLAQGIYRIVYRMIDFG---DRWDRGESERQRLGNDSDDSQPADLEWLIFGLVWAFLLLNVGVYLTRSQD 804
GL+DL+SMWRLLM E+E AC+TCPV+PV P ESFLAA+Q LE+ALWDN+GESHF VQT CRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLL+SFSKTAAG+PALILLD++P EGLLVLLRQR FDVR+CG GVTCVP SW+E YAQRRRWYAGS++AV+SHLTGKE YFQ W RWIIS YA VAN++LHSGLA +PVLLA+GI+R+V G D W+ S Q D D + +L+W++F LVW FLLLNVGVYLTRSQ+
Sbjct: 192 GLEDLESMWRLLMAEEEVACVTCPVRPVHPMESFLAASQSLEFALWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLNSFSKTAAGLPALILLDSSPNEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIELYAQRRRWYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANVFLHSGLALMPVLLAKGIHRLVLYDESRGESDDEWNNEWSAWQEESADDDIDRHTNLDWIVFALVWGFLLLNVGVYLTRSQE 462
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Match: D8LBH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH6_ECTSI) HSP 1 Score: 178 bits (452), Expect = 1.150e-42 Identity = 127/264 (48.11%), Postives = 156/264 (59.09%), Query Frame = 1
Query: 2464 SPAAINAILNSRIGATRRGDEVDEYARGV--VRGSRRQSSGAALAGIRAAWGTSMGGSQDDIGISSPS---------IGGVYSTSIVDDYDFSASEAENVE-------LNTTFRRPVGGGTLAGARAAWGTSMGGSQDDMACPRPMEADVARNSRTGATSYRASFQPDDDSGSELDDY-SRSLVLGVASSRRRPTGN-TLAGVRAAWGASVGDSQDDMACPSPATANAILNSRAGAVYSRGGDG--------GSSTSAGIRNGR 3171
S AAIN LN+R+GAT + D G V RR S +AGIRAAWGTSMGGS DDI P +G VY+T I+++ + S SE E V+ + RR + GTLAG RAAWG+S+ SQ+D+ + +V N R G S RA DD+S SE + SRSL+ G+A+ RRRP G TLAG+RAAWG S+G+SQDD+ACPSPAT NA LNSRAG VYSRG D G AG+RNGR
Sbjct: 8 SQAAINTKLNARVGATSIRSQRDAIGSGFADVGNRRRPPSTGTMAGIRAAWGTSMGGSLDDIACPLPETNNSMRNSRVGAVYATGIIEEDEESESEMEEVDPRLFIPGVQGNRRRALSAGTLAGIRAAWGSSLDDSQEDIPYTSTDKINVIHNPRVGVNSVRAHIL-DDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATVNARLNSRAGVVYSRGSDRYASGHVVHGQPMPAGMRNGR 270
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Match: F0XZN2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZN2_AURAN) HSP 1 Score: 62.8 bits (151), Expect = 4.950e-6 Identity = 40/162 (24.69%), Postives = 75/162 (46.30%), Query Frame = 1
Query: 1 GLQDLDSMWRLLMMEDEAACITCPVQPVD--PFESFLAAAQFLEYALWDNIGESHFAVQTACR-GAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLDSFSKTAAGVPALILLDTAPEEGLLVLLRQRDFDVRACGVTGGVTCVPNSWLEFYAQRRRWYAGSML 477
GL D++ ++ LL+ +D+ + +P P+ L Q ++ +G + C G M+++ L DG V EG +L+ + T+ + L++LD + G+ + + Q +T TCVP +W +++ QRRRWY G ++
Sbjct: 2038 GLADVEKLFLLLLEDDDTGVVCSKTRPAQYSPWVWLLRTQQLEYLEMFGGLGGFSWFRSVGCAVGMSVMYRWTAL-RDG-----VVHEGMT--VLEKYVSTSRSIVDLVMLDMVEDYGMTMYILQSGAGSVMSHLTHFRTCVPETWCDYFGQRRRWYTGGLV 2191 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1319.2494.1 >prot_L-elsbetiae_contig1319.2494.1 ID=prot_L-elsbetiae_contig1319.2494.1|Name=mRNA_L-elsbetiae_contig1319.2494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1109bp MWRLLMMEDEAACITCPVQPVDPFESFLAAAQFLEYALWDNIGESHFAVQback to top mRNA from alignment at L-elsbetiae_contig1319:16526..25401- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1319.2494.1 ID=mRNA_L-elsbetiae_contig1319.2494.1|Name=mRNA_L-elsbetiae_contig1319.2494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8876bp|location=Sequence derived from alignment at L-elsbetiae_contig1319:16526..25401- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1319:16526..25401- >mRNA_L-elsbetiae_contig1319.2494.1 ID=mRNA_L-elsbetiae_contig1319.2494.1|Name=mRNA_L-elsbetiae_contig1319.2494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6654bp|location=Sequence derived from alignment at L-elsbetiae_contig1319:16526..25401- (Laminarionema elsbetiae ELsaHSoW15)back to top |