prot_L-elsbetiae_contig1319.2494.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1319.2494.1
Unique Nameprot_L-elsbetiae_contig1319.2494.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1109
Homology
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Match: A0A6H5KP28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP28_9PHAE)

HSP 1 Score: 856 bits (2212), Expect = 9.660e-284
Identity = 578/1222 (47.30%), Postives = 700/1222 (57.28%), Query Frame = 0
Query:    1 MWRLLMMEDEAACITCPVQPVDPFESFLAAAQFLEYALWDNIGESHFAVQTACRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLDSFSKTAAGVPALILLDTAPEEGLLVLLRQRDFDVRACGVTGGVTCVPNSWLEFYAQRRRWYAGSMLAVASHLTGKECYFQLAWCRWIISLYAVVANLYLHSGLAFLPVLLAQGIYRIVYRMIDFG---DRWDRGESERQRLGNDSDDSQPADLEWLIFGLVWAFLLLNVGVYLTRSQDHLWMWINVTSVLWMALCLVTLLGSGVAVSPFIPIAVIVVPVVWAGLN--KKMPGHWCTLVVAAVPFVLLTAVNSVLVFLYALATLDSTEWGTRDVGFFDSGVSKSRAASMRQRKLCILFTVVAACGGVGILVMLYPAHTLLPVVVGIPVAAYALKLSLVIIPARLEKSRQSILLGDVGHRPLSLRRNMSELAPIHGRAPEYHTDRHGPSSRSSGRSRKGAL--KDPNESSSHIT-KDGTPSPGDMDVSTPGAFFAFPAGTSA-GSETMSGPAPGRPGHRXXXXXXXXXXXXXXXXXXXXGXIGXGS-VVGAQSTHSAGSRHSSAGSRGGRKTRSXXXXXXXXXXXXXXXXXXXXXXXXPATPAEGVPDALLTGIAGKGGRVARVAGAGIRA--------------------GADVQGNVPKAPKGARRTGFAQFLPPKGGT-GVLTDGTPPSSRTASVRSTKEEIRNAWGLKQETLESDDDSIRLDATDMKAFQS-----------GGVPSLPRDLGVEAALGPPPKAQAKRAXXXXXXXX-----------------------------------------------------------------------------------------------------DAGVKRYSWALKRPSTSEFDVPPRTPERG-RGGIRTSLARCSKGSQDDIQCPSPAAINAILNSRIGATRRGDEVDEYARGV--VRGSRRQSSGAALAGIRAAWGTSMGGSQDDIGISSPS---------IGGVYSTSIVDDYDFSASEAENVE-------LNTTFRRPVGGGTLAGARAAWGTSMGGSQDDMACPRPMEADVARNSRTGATSYRASFQPDDDSGSELDDY-SRSLVLGVASSRRRPTGN-TLAGVRAAWGASVGDSQDDMACPSPATANAILNSRAGAVYSRGGDG--------GSSTSAGIRNGR 1050
            MWRLLM E+E AC+TCPV+PV P  SFLAA+Q LE+ALWDN+GESHF VQT CRGAQCMFKYRCLVEDGRLA+PP+GEGAMPPLL+ FSKTAAG+PALILLD++P EGLLVLLRQR FDVR+CG   GVTCVP SW+EFYAQRRRWYAGS++AV+SHLTGKE YFQ  W RWIIS YA VANL+LHSGLA +PVLLA+G++++V      G   D W+   SE Q    D    Q  +L+W++F LVW F LLNVG YLTRSQD LWMWINVTSVLWM LC  TL+GSG AVSP IP+ ++++P V AGLN  +     W  L VAAVPFVLLT VNSVLVFLYALATLDSTEWGTRDVG FDSGVSK RAASMR+RKLCILFT +A    +G+++M+  +   LP+V+GIP AAY LKL LV++PA+LE+SRQ+ LLGDVG RPLSLR +++ELAPI+G  PE+ TDRH    R+ G   +  L  K P ++ SH+T +DGTPSPG MDVST G+FF   AG S  G  + SGPA    GHR                   X X  XG  +  + S H+ GSR SSA    G                    XXXXXXXXX  +  + V +       G+  + +   G+G+RA                    G D  G    A KGARRTGFA+FL  K    G+  DG  P++      S K EIR AWGL++ T ESDD      +T+M   +S           G   S P D     A  PPP  +A+         X                                                                                                     D  V+RYSWA  +PSTSEFD P   P+   R   +         S D  +  S AAIN  LN+R+GAT    + D    G   V   RR  S   LAGIRAAWGTS+GGSQDDI    P          +G VY+T I+++ + + SE E V+       +    RR +  GTLAG RAAWG+S+ GSQ+D+      + +V  N R G    RA    DD+S SE +   SRSL+ G+A+ RRRP G  TLAG+RAAWG S+G+SQDD+ACPSPAT+N  LNSRAG VYSRGGD         G    AG+RNGR
Sbjct:  199 MWRLLMAEEEVACVTCPVRPVHPMGSFLAASQSLEFALWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAEPPIGEGAMPPLLNPFSKTAAGLPALILLDSSPSEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIEFYAQRRRWYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANLFLHSGLALMPVLLAKGLHQLVLYDESRGESDDDWNDEWSEWQEESADDGIDQHTNLDWIVFALVWGFFLLNVGFYLTRSQDQLWMWINVTSVLWMLLCGGTLVGSGFAVSPLIPVMLVIIPPVLAGLNTARGTIATWRYLCVAAVPFVLLTTVNSVLVFLYALATLDSTEWGTRDVGSFDSGVSKPRAASMRRRKLCILFTTMATSCALGVVMMISSSLIFLPIVIGIPSAAYLLKLLLVVVPAKLERSRQTYLLGDVGSRPLSLRGSVAELAPINGCPPEFSTDRHSGGDRNGGGIGQKGLGPKSPAKTGSHVTAEDGTPSPGGMDVSTSGSFFG--AGMSVVGDSSASGPAADGLGHRRHGSKSASISSGFAGVAGVXXXXXXGGDICWSNSAHATGSRQSSAAGMAGXXXXXNTSGKDGSAAGRPRAXXXXXXXXXXXS-RQDVSETAAMATQGRNRKTSSALGSGLRASLKRMNSRGRSSSTGPSSAVGDDAHG---VAIKGARRTGFARFLSAKDSVEGITLDGAKPTT------SKKAEIRKAWGLRKATSESDD------STEMFVMESLNRKLNPHGIRGNSSSCPPDSSF--AESPPPAFRARNTALAAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMGAPADGEVRRYSWACPQPSTSEFDAPVSKPDAAARAAEQNRRLSWGNSSMDSEEFDSQAAINTKLNARVGATSIRSQRDAIGSGFADVGNRRRPPSTGTLAGIRAAWGTSIGGSQDDIACRLPETKTSTRNSRLGAVYATGIIEEDEENESEMEEVDPRLFAPGVQGNRRRSLSAGTLAGIRAAWGSSLDGSQEDIPYTSTDKMNVIHNPRVGVNGVRAHIL-DDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATSNTRLNSRAGVVYSRGGDRYASGHVVRGQPMPAGMRNGR 1399          
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Match: D8LBH7_ECTSI (Chitin synthase 1, chs-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH7_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 8.520e-123
Identity = 189/264 (71.59%), Postives = 217/264 (82.20%), Query Frame = 0
Query:    1 MWRLLMMEDEAACITCPVQPVDPFESFLAAAQFLEYALWDNIGESHFAVQTACRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLDSFSKTAAGVPALILLDTAPEEGLLVLLRQRDFDVRACGVTGGVTCVPNSWLEFYAQRRRWYAGSMLAVASHLTGKECYFQLAWCRWIISLYAVVANLYLHSGLAFLPVLLAQGIYRIVYRMIDFG---DRWDRGESERQRLGNDSDDSQPADLEWLIFGLVWAFLLLNVGVYLTRSQD 261
            MWRLLM E+E AC+TCPV+PV P ESFLAA+Q LE+ALWDN+GESHF VQT CRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLL+SFSKTAAG+PALILLD++P EGLLVLLRQR FDVR+CG   GVTCVP SW+E YAQRRRWYAGS++AV+SHLTGKE YFQ  W RWIIS YA VAN++LHSGLA +PVLLA+GI+R+V      G   D W+   S  Q    D D  +  +L+W++F LVW FLLLNVGVYLTRSQ+
Sbjct:  199 MWRLLMAEEEVACVTCPVRPVHPMESFLAASQSLEFALWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLNSFSKTAAGLPALILLDSSPNEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIELYAQRRRWYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANVFLHSGLALMPVLLAKGIHRLVLYDESRGESDDEWNNEWSAWQEESADDDIDRHTNLDWIVFALVWGFLLLNVGVYLTRSQE 462          
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Match: D8LBH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH6_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.140e-42
Identity = 127/264 (48.11%), Postives = 156/264 (59.09%), Query Frame = 0
Query:  815 SPAAINAILNSRIGATRRGDEVDEYARGV--VRGSRRQSSGAALAGIRAAWGTSMGGSQDDIGISSPS---------IGGVYSTSIVDDYDFSASEAENVE-------LNTTFRRPVGGGTLAGARAAWGTSMGGSQDDMACPRPMEADVARNSRTGATSYRASFQPDDDSGSELDDY-SRSLVLGVASSRRRPTGN-TLAGVRAAWGASVGDSQDDMACPSPATANAILNSRAGAVYSRGGDG--------GSSTSAGIRNGR 1050
            S AAIN  LN+R+GAT    + D    G   V   RR  S   +AGIRAAWGTSMGGS DDI    P          +G VY+T I+++ + S SE E V+       +    RR +  GTLAG RAAWG+S+  SQ+D+      + +V  N R G  S RA    DD+S SE +   SRSL+ G+A+ RRRP G  TLAG+RAAWG S+G+SQDD+ACPSPAT NA LNSRAG VYSRG D         G    AG+RNGR
Sbjct:    8 SQAAINTKLNARVGATSIRSQRDAIGSGFADVGNRRRPPSTGTMAGIRAAWGTSMGGSLDDIACPLPETNNSMRNSRVGAVYATGIIEEDEESESEMEEVDPRLFIPGVQGNRRRALSAGTLAGIRAAWGSSLDDSQEDIPYTSTDKINVIHNPRVGVNSVRAHIL-DDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATVNARLNSRAGVVYSRGSDRYASGHVVHGQPMPAGMRNGR 270          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1319.2494.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KP28_9PHAE9.660e-28447.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBH7_ECTSI8.520e-12371.59Chitin synthase 1, chs-1 n=1 Tax=Ectocarpus silicu... [more]
D8LBH6_ECTSI1.140e-4248.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 172..197
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 238..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 289..307
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 258..262
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 400..420
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 263..282
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 421..1109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 343..373
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 308..318
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 198..237
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 319..342
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 283..288
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 374..394
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 395..399
NoneNo IPR availableTMHMMTMhelixcoord: 543..565
NoneNo IPR availableTMHMMTMhelixcoord: 173..195
NoneNo IPR availableTMHMMTMhelixcoord: 374..396
NoneNo IPR availableTMHMMTMhelixcoord: 400..422
NoneNo IPR availableTMHMMTMhelixcoord: 236..258
NoneNo IPR availableTMHMMTMhelixcoord: 320..342
NoneNo IPR availableTMHMMTMhelixcoord: 271..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1319contigL-elsbetiae_contig1319:16526..25380 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1319.2494.1mRNA_L-elsbetiae_contig1319.2494.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1319 16526..25401 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1319.2494.1 ID=prot_L-elsbetiae_contig1319.2494.1|Name=mRNA_L-elsbetiae_contig1319.2494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1109bp
MWRLLMMEDEAACITCPVQPVDPFESFLAAAQFLEYALWDNIGESHFAVQ
TACRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLDSFSKTAAGVPALIL
LDTAPEEGLLVLLRQRDFDVRACGVTGGVTCVPNSWLEFYAQRRRWYAGS
MLAVASHLTGKECYFQLAWCRWIISLYAVVANLYLHSGLAFLPVLLAQGI
YRIVYRMIDFGDRWDRGESERQRLGNDSDDSQPADLEWLIFGLVWAFLLL
NVGVYLTRSQDHLWMWINVTSVLWMALCLVTLLGSGVAVSPFIPIAVIVV
PVVWAGLNKKMPGHWCTLVVAAVPFVLLTAVNSVLVFLYALATLDSTEWG
TRDVGFFDSGVSKSRAASMRQRKLCILFTVVAACGGVGILVMLYPAHTLL
PVVVGIPVAAYALKLSLVIIPARLEKSRQSILLGDVGHRPLSLRRNMSEL
APIHGRAPEYHTDRHGPSSRSSGRSRKGALKDPNESSSHITKDGTPSPGD
MDVSTPGAFFAFPAGTSAGSETMSGPAPGRPGHRRHGSSASMSSGFAGVA
GIGGGGIGGGSVVGAQSTHSAGSRHSSAGSRGGRKTRSKTGSKVASLAGS
TRSGSRSSSKSPPATPAEGVPDALLTGIAGKGGRVARVAGAGIRAGADVQ
GNVPKAPKGARRTGFAQFLPPKGGTGVLTDGTPPSSRTASVRSTKEEIRN
AWGLKQETLESDDDSIRLDATDMKAFQSGGVPSLPRDLGVEAALGPPPKA
QAKRAAAAAPAPADAGVKRYSWALKRPSTSEFDVPPRTPERGRGGIRTSL
ARCSKGSQDDIQCPSPAAINAILNSRIGATRRGDEVDEYARGVVRGSRRQ
SSGAALAGIRAAWGTSMGGSQDDIGISSPSIGGVYSTSIVDDYDFSASEA
ENVELNTTFRRPVGGGTLAGARAAWGTSMGGSQDDMACPRPMEADVARNS
RTGATSYRASFQPDDDSGSELDDYSRSLVLGVASSRRRPTGNTLAGVRAA
WGASVGDSQDDMACPSPATANAILNSRAGAVYSRGGDGGSSTSAGIRNGR
RGTSNTRTVESVAVTSGTPKGVYTPARRPRSEHRAVGSGGDSVERGRAAN
SRGAGGGGG
back to top