mRNA_L-elsbetiae_contig10202.249.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10202.249.1
Unique NamemRNA_L-elsbetiae_contig10202.249.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10202.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10202contigL-elsbetiae_contig10202:3688..4917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size431
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10202.249.1prot_L-elsbetiae_contig10202.249.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10202 3688..4917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815251.291755-CDS-L-elsbetiae_contig10202:3687..37831622815251.291755-CDS-L-elsbetiae_contig10202:3687..3783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10202 3688..3783 +
1691682796.5706263-CDS-L-elsbetiae_contig10202:3687..37831691682796.5706263-CDS-L-elsbetiae_contig10202:3687..3783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10202 3688..3783 +
1622815251.303212-CDS-L-elsbetiae_contig10202:4231..43491622815251.303212-CDS-L-elsbetiae_contig10202:4231..4349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10202 4232..4349 +
1691682796.5809758-CDS-L-elsbetiae_contig10202:4231..43491691682796.5809758-CDS-L-elsbetiae_contig10202:4231..4349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10202 4232..4349 +
1622815251.3150368-CDS-L-elsbetiae_contig10202:4702..49171622815251.3150368-CDS-L-elsbetiae_contig10202:4702..4917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10202 4703..4917 +
1691682796.5898707-CDS-L-elsbetiae_contig10202:4702..49171691682796.5898707-CDS-L-elsbetiae_contig10202:4702..4917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10202 4703..4917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10202.249.1

>prot_L-elsbetiae_contig10202.249.1 ID=prot_L-elsbetiae_contig10202.249.1|Name=mRNA_L-elsbetiae_contig10202.249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
TAIGKTAVTEGVAAAAEAFPLQFARWIDATEQGSGCLERRHLQQQLRGLI
EARCRRCRQSLLRIDTKALLAGYYCARGSARRRRRQKTTREFGAGQIVRR
LWRVGCGWVAPRGCIWLTTREPREIQILERSALWQRHNIMSE*
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mRNA from alignment at L-elsbetiae_contig10202:3688..4917+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10202.249.1 ID=mRNA_L-elsbetiae_contig10202.249.1|Name=mRNA_L-elsbetiae_contig10202.249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig10202:3688..4917+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCGATAGGCAAGACAGCCGTGACAGAGGGAGTGGCGGCGGCGGCAGA
GGCATTCCCGCTCCAGTTCGCGCGATGGATCGATGCGACGGAACAGGTGA
CAAAAGAAGAAAAGCAGAGCGTCGTGCTTGCGTTTGGGATGGTCCGATAT
TCGATCCGCGTGCGCGGAGACAGGCAAGCTAAGGTTTTCGTATTATTTTG
CCCTTGGCGCTCTCCGGAATATAGTGTATTCGTGTTCAGTCGCGCTCGAG
TAGGGGTCGGCGACCGTTAAACTGTTGCCTACACATCGCTCGACTACACG
TCGAATTAATACGTTGTGATGTAGGCAAAAGTGCGCAGGGAGTCGAAAAT
CTCATTTTTTTCTGTGCAATGGTTCTCCTTTGTGCCCCCCACGTCTATCT
GTAAATTGACGACGCGAAATTCACGTGAGATTTATTGGCTTGACTTGAGT
CGTATGTATGTTGGGTGTCTTTGTTCTTTTTCGTTGTTTCCTGCCGCCAT
GTAACCTCTCTGTTGCGTTGTTGGTGTTCTTACATGTCGTTCAGGGATCG
GGGTGCCTGGAGAGGCGGCACTTGCAGCAACAGCTACGTGGATTGATCGA
AGCTCGCTGTCGGAGATGCCGTCAATCGCTGCTTCGCATCGACACTAAAG
CCTTACTTGCAGGTAAGAAATCACGTGTGATGGAGTACCCGTTGACTCTG
GCCTGCTGCCGAATTTCTTTCTTGCTGTGCTGCGCTATTCTCCTTATGAA
TTGCTTCGATGGTTTTCGCTCCCTTAAATAATACATGTGTTCGGTTTTCT
CATTTTAACCATGTTGGAAGTATTTAGCCATCCATATTTCTATCGATTTT
GACCGGTGCGAGGGTTGAGTTAGGGAGCGGAGGGGAGTGACAGAGGTGCT
GCTTTGGTGTGCGTCGCACAGCGGGCGTATGGCGAGATAGAAAGCTCTCA
AATTGTTTCGTCTGCGGTGCTTCTGATAGCTCGCCTGTTTTCTGTATTCC
TCTTCTCCGTGGCAGGATACTACTGTGCACGGGGAAGCGCAAGGAGGCGG
CGGCGCCAGAAGACAACGAGAGAGTTTGGAGCCGGACAAATAGTGCGGAG
ATTGTGGCGAGTTGGGTGTGGGTGGGTAGCACCTCGGGGGTGCATTTGGC
TCACCACCCGGGAGCCCCGAGAGATTCAGATTTTGGAACGATCGGCATTG
TGGCAAAGACACAATATTATGAGTGAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10202:3688..4917+

>mRNA_L-elsbetiae_contig10202.249.1 ID=mRNA_L-elsbetiae_contig10202.249.1|Name=mRNA_L-elsbetiae_contig10202.249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig10202:3688..4917+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCGATAGGCAAGACAGCCGTGACAGAGGGAGTGGCGGCGGCGGCAGA
GGCATTCCCGCTCCAGTTCGCGCGATGGATCGATGCGACGGAACAGACAG
CGATAGGCAAGACAGCCGTGACAGAGGGAGTGGCGGCGGCGGCAGAGGCA
TTCCCGCTCCAGTTCGCGCGATGGATCGATGCGACGGAACAGGGATCGGG
GTGCCTGGAGAGGCGGCACTTGCAGCAACAGCTACGTGGATTGATCGAAG
CTCGCTGTCGGAGATGCCGTCAATCGCTGCTTCGCATCGACACTAAAGCC
TTACTTGCAGGGATCGGGGTGCCTGGAGAGGCGGCACTTGCAGCAACAGC
TACGTGGATTGATCGAAGCTCGCTGTCGGAGATGCCGTCAATCGCTGCTT
CGCATCGACACTAAAGCCTTACTTGCAGGATACTACTGTGCACGGGGAAG
CGCAAGGAGGCGGCGGCGCCAGAAGACAACGAGAGAGTTTGGAGCCGGAC
AAATAGTGCGGAGATTGTGGCGAGTTGGGTGTGGGTGGGTAGCACCTCGG
GGGTGCATTTGGCTCACCACCCGGGAGCCCCGAGAGATTCAGATTTTGGA
ACGATCGGCATTGTGGCAAAGACACAATATTATGAGTGAATAGGATACTA
CTGTGCACGGGGAAGCGCAAGGAGGCGGCGGCGCCAGAAGACAACGAGAG
AGTTTGGAGCCGGACAAATAGTGCGGAGATTGTGGCGAGTTGGGTGTGGG
TGGGTAGCACCTCGGGGGTGCATTTGGCTCACCACCCGGGAGCCCCGAGA
GATTCAGATTTTGGAACGATCGGCATTGTGGCAAAGACACAATATTATGA
GTGAATAG
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