mRNA_L-elsbetiae_contig13187.2489.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13187.2489.1
Unique NamemRNA_L-elsbetiae_contig13187.2489.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13187.2489.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 6.910e-96
Identity = 246/343 (71.72%), Postives = 264/343 (76.97%), Query Frame = 1 
Query:  157 MMEALKTPSDIQTLTFHNAGLTEASMAVLVDGLQHTSVRSLGLDYNTPLPLASLSSSSFMRPKEIKRGAQAAEDLANEAAFD---RNFAGLVREGSKLKALSLRGNGIRDFEAAALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLAPEQEKRAAADAKIAAQNKIAQDALKKKKDAKVETRLPLSAVVVQTGGDGSGKAIAGGSKSLAALNLSENRELGEGGALVGLLSRIVKARKEEAEEAGXXXXXXXXXXXVVLQELSLARCQGYAEQEEADGEDRDGMAVGDQAGALAAMSFALRPTKVVV 1176
            MMEALK  SD+ T+ FHNAGLT AS+ VLV+GL HT+VR   LDYNT LP+   SSS   RP        A E+      F    RNFAGLV EGSKLKALSLRGN + D EA ALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVL  EQEKRAAAD KIAAQNK+A DA+KKKKDAKVETRLPLSAV V+TG DG  +A+AGGS+SLAALNL++NR+LGEGGAL GLLSRIV ARKEEA EAG           VVLQEL L RCQGYAE  EA GED           A+AAMSFALRPTKVVV
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNT-LPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAE--EAGGEDDT---------AIAAMSFALRPTKVVV 331
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13187.2489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT35_ECTSI6.910e-9671.72Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13187contigL-elsbetiae_contig13187:2697..4790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.9
Seed ortholog evalue1.1e-79
Seed eggNOG ortholog2880.D7FT35
KEGG koko:K09257
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons3
Model size1179
Cds size1179
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13187.2489.1prot_L-elsbetiae_contig13187.2489.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13187 2697..4790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.564175-CDS-L-elsbetiae_contig13187:2696..33091622815496.564175-CDS-L-elsbetiae_contig13187:2696..3309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13187 2697..3309 -
1691682926.8546247-CDS-L-elsbetiae_contig13187:2696..33091691682926.8546247-CDS-L-elsbetiae_contig13187:2696..3309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13187 2697..3309 -
1622815496.5748205-CDS-L-elsbetiae_contig13187:3825..39611622815496.5748205-CDS-L-elsbetiae_contig13187:3825..3961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13187 3826..3961 -
1691682926.8654072-CDS-L-elsbetiae_contig13187:3825..39611691682926.8654072-CDS-L-elsbetiae_contig13187:3825..3961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13187 3826..3961 -
1622815496.5871212-CDS-L-elsbetiae_contig13187:4360..47901622815496.5871212-CDS-L-elsbetiae_contig13187:4360..4790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13187 4361..4790 -
1691682926.876639-CDS-L-elsbetiae_contig13187:4360..47901691682926.876639-CDS-L-elsbetiae_contig13187:4360..4790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13187 4361..4790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13187.2489.1

>prot_L-elsbetiae_contig13187.2489.1 ID=prot_L-elsbetiae_contig13187.2489.1|Name=mRNA_L-elsbetiae_contig13187.2489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=393bp
ISRVFEIPAHPCLASRRAKGTTEDGKPAPSTAKASSTVQLRNFAVDLATL
HLMMEALKTPSDIQTLTFHNAGLTEASMAVLVDGLQHTSVRSLGLDYNTP
LPLASLSSSSFMRPKEIKRGAQAAEDLANEAAFDRNFAGLVREGSKLKAL
SLRGNGIRDFEAAALAEAIEENAVLCSLNLFDNKITDVGAAAFAEMLRLN
TVLRGLSLARNSLTPASAEAFGLLLAGGYEVLAPEQEKRAAADAKIAAQN
KIAQDALKKKKDAKVETRLPLSAVVVQTGGDGSGKAIAGGSKSLAALNLS
ENRELGEGGALVGLLSRIVKARKEEAEEAGAGAGFGAGAGAVVLQELSLA
RCQGYAEQEEADGEDRDGMAVGDQAGALAAMSFALRPTKVVV*
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mRNA from alignment at L-elsbetiae_contig13187:2697..4790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13187.2489.1 ID=mRNA_L-elsbetiae_contig13187.2489.1|Name=mRNA_L-elsbetiae_contig13187.2489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2094bp|location=Sequence derived from alignment at L-elsbetiae_contig13187:2697..4790- (Laminarionema elsbetiae ELsaHSoW15)
ATATCAAGGGTGTTCGAGATCCCAGCTCACCCGTGTCTGGCGTCACGCCG
GGCGAAGGGTACGACTGAAGACGGGAAGCCCGCCCCCTCGACCGCAAAGG
CCTCTTCCACGGTCCAACTACGAAACTTTGCCGTGGATCTCGCGACTTTA
CACCTCATGATGGAAGCACTCAAGACGCCTTCTGACATACAAACGCTCAC
CTTTCACAACGCTGGACTCACAGAAGCCTCTATGGCTGTCCTCGTGGACG
GTCTCCAACATACGAGTGTCCGCTCCCTAGGCTTGGATTACAACACACCG
CTACCACTGGCATCGTTGTCCTCGTCATCATTCATGAGACCGAAGGAGAT
AAAGCGTGGAGCCCAAGCAGCGGAAGACTTGGCAAACGAAGCTGCATTTG
ACAGAAACTTTGCCGGTCTCGTCAGAGAAGGTACGAACCAAGGATCGTAG
AAACAGACAAGAGTCGTTTCAGAGTTGCAGAGCGATAATTTTTTACGAAA
GTTAAGGTACATCACTGGGTCAGGTAAGCCTTTGTATGTTTACATGTTTT
TTCAAGATGTCTGGTACCGACGGAAGCGCTCATTCCTTCAGCGTGGTGGT
ATTTAGTGTTGTCTTTCTGACCCAATATAGAGAGACTGTTGGTTTTGCTT
GTGACACAGACTTCTTTCATTTCATGTGATTGTTTCTAAGAGCACGAGCA
TTGACAAGGCTTGACAACGGCGGTTCAAACGTGAAATAAACAAAGAAACA
GGTGCCGACGATGTCAAGCCTGTCTATTGGTCTAACCAAACTTATCATTG
TTGACTTTTGGTCCTCTTCGCCCCAAAAGGTTCAAAGCTCAAGGCGCTGT
CCCTCAGAGGGAACGGAATCCGAGACTTCGAAGCGGCCGCCCTCGCGGAG
GCCATCGAAGAGAACGCTGTCTTGTGTTCTTTAAATCTTTTTGACAACAA
AATCACCGATGTCGGGTGAGCACGAGATCGAGCGAGAGAAACCAAATTTA
CATTTCAGTACATACCGAGAAACCAAATTTACATTTCAGTAAAGACCAGT
CGAGGTCGAGCGTATTGCCGATGATGTTAGAGAAAGAAGCCAATTCGGAA
TAACTGTTGTGCGGTGGGATACTTCTTTTTTACACCAATTCTAACCCGAT
TAGTATGCGTGCACCCACGCTTGCTCGGTGTAACTCGAAACGAGTGCCAT
AACGTACAGAAAAGGTATTTCAGCATAAAGTGGAGTGCCGTGGATTCCGT
TCGAGACCTTGTGCTGCAACGCCACATACGACGTGACCCGAGTAAAGCAG
TGCTTTGGGGAGGACTACTTTAGATTTTTCCCCTAGTTCACACGGGTTGC
TCCAGCCGTACGTTCCGCTTGAAACTTTTTCATTCGGTGAGCAAGACATC
CACGTTAGTTTGTTCGTTCTACTTCTTGCCGCATCTGATAAAACGCATGC
CTCGTCGTGCGTGCGCGCCCATCAAACGCAGCGCCGCTGCGTTCGCGGAA
ATGCTAAGGCTCAACACCGTTCTGCGTGGCCTTTCCCTAGCAAGAAATAG
CTTGACCCCAGCGTCGGCCGAGGCGTTCGGGCTGTTGTTGGCAGGCGGGT
ACGAGGTCCTGGCTCCTGAGCAAGAGAAACGAGCTGCGGCGGATGCGAAG
ATAGCAGCGCAGAACAAGATTGCCCAAGACGCTTTGAAAAAGAAGAAGGA
CGCCAAGGTGGAGACCCGACTTCCCCTGAGCGCGGTCGTAGTCCAAACGG
GAGGGGACGGGAGCGGCAAAGCCATCGCTGGAGGCAGCAAGAGCTTGGCA
GCGCTCAACTTGTCAGAAAATCGGGAGCTCGGCGAGGGCGGAGCGCTTGT
GGGGCTCCTTTCGAGGATAGTTAAGGCGAGGAAGGAAGAAGCAGAAGAGG
CGGGGGCGGGAGCGGGGTTCGGGGCCGGGGCTGGGGCGGTCGTCTTGCAA
GAGCTAAGCTTGGCTCGTTGTCAAGGGTACGCCGAGCAGGAGGAGGCGGA
CGGGGAGGACAGGGACGGCATGGCCGTAGGAGATCAAGCGGGGGCGCTCG
CTGCCATGTCTTTCGCGCTGAGGCCGACCAAGGTTGTCGTATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13187:2697..4790-

>mRNA_L-elsbetiae_contig13187.2489.1 ID=mRNA_L-elsbetiae_contig13187.2489.1|Name=mRNA_L-elsbetiae_contig13187.2489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2358bp|location=Sequence derived from alignment at L-elsbetiae_contig13187:2697..4790- (Laminarionema elsbetiae ELsaHSoW15)
ATATCAAGGGTGTTCGAGATCCCAGCTCACCCGTGTCTGGCGTCACGCCG
GGCGAAGGGTACGACTGAAGACGGGAAGCCCGCCCCCTCGACCGCAAAGG
CCTCTTCCACGGTCCAACTACGAAACTTTGCCGTGGATCTCGCGACTTTA
CACCTCATGATGGAAGCACTCAAGACGCCTTCTGACATACAAACGCTCAC
CTTTCACAACGCTGGACTCACAGAAGCCTCTATGGCTGTCCTCGTGGACG
GTCTCCAACATACGAGTGTCCGCTCCCTAGGCTTGGATTACAACACACCG
CTACCACTGGCATCGTTGTCCTCGTCATCATTCATGAGACCGAAGGAGAT
AAAGCGTGGAGCCCAAGCAGCGGAAGACTTGGCAAACGAAGCTGCATTTG
ACAGAAACTTTGCCGGTCTCGTCAGAGAAGATATCAAGGGTGTTCGAGAT
CCCAGCTCACCCGTGTCTGGCGTCACGCCGGGCGAAGGGTACGACTGAAG
ACGGGAAGCCCGCCCCCTCGACCGCAAAGGCCTCTTCCACGGTCCAACTA
CGAAACTTTGCCGTGGATCTCGCGACTTTACACCTCATGATGGAAGCACT
CAAGACGCCTTCTGACATACAAACGCTCACCTTTCACAACGCTGGACTCA
CAGAAGCCTCTATGGCTGTCCTCGTGGACGGTCTCCAACATACGAGTGTC
CGCTCCCTAGGCTTGGATTACAACACACCGCTACCACTGGCATCGTTGTC
CTCGTCATCATTCATGAGACCGAAGGAGATAAAGCGTGGAGCCCAAGCAG
CGGAAGACTTGGCAAACGAAGCTGCATTTGACAGAAACTTTGCCGGTCTC
GTCAGAGAAGGTTCAAAGCTCAAGGCGCTGTCCCTCAGAGGGAACGGAAT
CCGAGACTTCGAAGCGGCCGCCCTCGCGGAGGCCATCGAAGAGAACGCTG
TCTTGTGTTCTTTAAATCTTTTTGACAACAAAATCACCGATGTCGGGTTC
AAAGCTCAAGGCGCTGTCCCTCAGAGGGAACGGAATCCGAGACTTCGAAG
CGGCCGCCCTCGCGGAGGCCATCGAAGAGAACGCTGTCTTGTGTTCTTTA
AATCTTTTTGACAACAAAATCACCGATGTCGGCGCCGCTGCGTTCGCGGA
AATGCTAAGGCTCAACACCGTTCTGCGTGGCCTTTCCCTAGCAAGAAATA
GCTTGACCCCAGCGTCGGCCGAGGCGTTCGGGCTGTTGTTGGCAGGCGGG
TACGAGGTCCTGGCTCCTGAGCAAGAGAAACGAGCTGCGGCGGATGCGAA
GATAGCAGCGCAGAACAAGATTGCCCAAGACGCTTTGAAAAAGAAGAAGG
ACGCCAAGGTGGAGACCCGACTTCCCCTGAGCGCGGTCGTAGTCCAAACG
GGAGGGGACGGGAGCGGCAAAGCCATCGCTGGAGGCAGCAAGAGCTTGGC
AGCGCTCAACTTGTCAGAAAATCGGGAGCTCGGCGAGGGCGGAGCGCTTG
TGGGGCTCCTTTCGAGGATAGTTAAGGCGAGGAAGGAAGAAGCAGAAGAG
GCGGGGGCGGGAGCGGGGTTCGGGGCCGGGGCTGGGGCGGTCGTCTTGCA
AGAGCTAAGCTTGGCTCGTTGTCAAGGGTACGCCGAGCAGGAGGAGGCGG
ACGGGGAGGACAGGGACGGCATGGCCGTAGGAGATCAAGCGGGGGCGCTC
GCTGCCATGTCTTTCGCGCTGAGGCCGACCAAGGTTGTCGTATGACGCCG
CTGCGTTCGCGGAAATGCTAAGGCTCAACACCGTTCTGCGTGGCCTTTCC
CTAGCAAGAAATAGCTTGACCCCAGCGTCGGCCGAGGCGTTCGGGCTGTT
GTTGGCAGGCGGGTACGAGGTCCTGGCTCCTGAGCAAGAGAAACGAGCTG
CGGCGGATGCGAAGATAGCAGCGCAGAACAAGATTGCCCAAGACGCTTTG
AAAAAGAAGAAGGACGCCAAGGTGGAGACCCGACTTCCCCTGAGCGCGGT
CGTAGTCCAAACGGGAGGGGACGGGAGCGGCAAAGCCATCGCTGGAGGCA
GCAAGAGCTTGGCAGCGCTCAACTTGTCAGAAAATCGGGAGCTCGGCGAG
GGCGGAGCGCTTGTGGGGCTCCTTTCGAGGATAGTTAAGGCGAGGAAGGA
AGAAGCAGAAGAGGCGGGGGCGGGAGCGGGGTTCGGGGCCGGGGCTGGGG
CGGTCGTCTTGCAAGAGCTAAGCTTGGCTCGTTGTCAAGGGTACGCCGAG
CAGGAGGAGGCGGACGGGGAGGACAGGGACGGCATGGCCGTAGGAGATCA
AGCGGGGGCGCTCGCTGCCATGTCTTTCGCGCTGAGGCCGACCAAGGTTG
TCGTATGA
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