mRNA_L-elsbetiae_contig10200.248.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10200.248.1
Unique NamemRNA_L-elsbetiae_contig10200.248.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10200.248.1 vs. uniprot
Match: A0A6H5KTV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.500e-14
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:   16 GSVLVELYCAMVACMPLAALAQ-----------GVRLLTAGSAGRSILGL-PAAGGGDAGAGLVGPSAQGAARFALATAATGHAIVALALKLLQGRTGG 276
            GSV++ELY A+VA MP A +AQ           G++LL  G  GR+++GL P  G  + G+G  G +AQGAARFALATAATGHA++A+ALKLL+ RTGG
Sbjct:  174 GSVVIELYVAVVAFMPAAGIAQASQGAGWKEIKGLQLLILGPVGRNLMGLAPPTGHNNDGSGG-GTNAQGAARFALATAATGHAVIAVALKLLEERTGG 271
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BLAST of mRNA_L-elsbetiae_contig10200.248.1 vs. uniprot
Match: D8LKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN2_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.320e-7
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   16 GSVLVELYCAMVACMPLAALAQGVRLLTAGSAGRSILGL-PAAGGGDAGAGLVGPSAQGAARFALAT--AATGHAIVALALKLLQGRTGG 276
            GSV+VELY A+VA MP A +AQG++LL  G  GR+++GL P  G  D G                    AATGHA++ +ALKLL+ RTGG
Sbjct:  221 GSVVVELYVAVVAFMPAAGIAQGLQLLILGPVGRNLMGLAPPTGHNDGGXXXXXXXXXXXXXXXXXXXXAATGHAVITVALKLLEERTGG 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10200.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTV5_9PHAE4.500e-1454.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKN2_ECTSI6.320e-746.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10200contigL-elsbetiae_contig10200:1717..2864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815251.2462387-CDS-L-elsbetiae_contig10200:1716..17971622815251.2462387-CDS-L-elsbetiae_contig10200:1716..1797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10200 1717..1797 +
1691682796.5449474-CDS-L-elsbetiae_contig10200:1716..17971691682796.5449474-CDS-L-elsbetiae_contig10200:1716..1797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10200 1717..1797 +
1622815251.2611198-CDS-L-elsbetiae_contig10200:2645..28641622815251.2611198-CDS-L-elsbetiae_contig10200:2645..2864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10200 2646..2864 +
1691682796.5559852-CDS-L-elsbetiae_contig10200:2645..28641691682796.5559852-CDS-L-elsbetiae_contig10200:2645..2864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10200 2646..2864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10200.248.1prot_L-elsbetiae_contig10200.248.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10200 1717..2864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10200.248.1

>prot_L-elsbetiae_contig10200.248.1 ID=prot_L-elsbetiae_contig10200.248.1|Name=mRNA_L-elsbetiae_contig10200.248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
GTVAAGSVLVELYCAMVACMPLAALAQGVRLLTAGSAGRSILGLPAAGGG
DAGAGLVGPSAQGAARFALATAATGHAIVALALKLLQGRTGGGGGGGRGG
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mRNA from alignment at L-elsbetiae_contig10200:1717..2864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10200.248.1 ID=mRNA_L-elsbetiae_contig10200.248.1|Name=mRNA_L-elsbetiae_contig10200.248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1148bp|location=Sequence derived from alignment at L-elsbetiae_contig10200:1717..2864+ (Laminarionema elsbetiae ELsaHSoW15)
GGGACGGTTGCGGCAGGAAGCGTCCTGGTTGAGCTGTACTGCGCCATGGT
GGCGTGTATGCCGTTGGCGGCGTTAGCTCAGGTGAGTTACCGAGGTCAAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAAGTCATGTAC
TTGCATGTATGACTACCCCCCCCTTCCTGTGTGACCCCGGTGGGGTCGTC
TAGCTAGTCGTAGGGGAGGAAGGGGGCCAGTGGGGCAGATGACGAATAAA
TAGGTCAATAATGGGAGAAAATAAAAAAAACAAAAAATATGTTATGTCTA
GCGGTGAAGTAAGTGTTGTCTCAGCGAAAGTAGCGCAGCACCTTTTGCCT
CAAGTGGCAGGTGGTGCAGTTTTGTTTTATAGCATCGCTGGGGGCGACGT
GGCGATGTGTGTATGCATGACGGAGCTGCCGATACATACATACCTCTCAG
ACGTCTCAGGCGAGAGGACTGCGGCAGGGAACGAGGGCTGCGCTACAAGT
ACTCCGTTGTTGGCGTGTCTACTTTGGGCTTTGGAATCACATTTGGGAAC
TCTTGTGCTTGACACCTCCTCGTGGTATAATACTGGACCAATCGAGTCGA
AGTATCTTTGCTGCTGTGACTCGACTCTGGTGGTGATGCGTGGAAGTGCA
CACCGAGTTGGCATAGGCACAAGGGTCTCTTCTCGGGTATCTACCGACCT
GGCGTGGCTTCTAAATGAATAAGCGAACGTATGCACCTCTCTGCGCTCAC
GCGACCGCAAGGTAGAACCAAAACCGACCCAGGCGACGAGCGGTTACTTG
GATGAGACATATATATATTTTTTTCATTCCGACATCGGGCGGCAAGCACC
CTGAGCTAACTTGCTAACTTTAGTGTTTTCTCTCTCGCATCCCTACCGCC
GTTGCGAACACATATCGCCCAAACTCCAGGGGGTGCGGCTGCTGACGGCC
GGGTCGGCAGGGAGGAGTATCCTGGGGCTCCCGGCAGCCGGGGGTGGTGA
CGCCGGCGCCGGGTTAGTCGGCCCAAGCGCGCAAGGCGCCGCCCGTTTCG
CGCTGGCCACCGCCGCCACCGGACACGCAATCGTTGCTCTCGCCCTCAAG
CTTCTGCAGGGCCGTACGGGCGGCGGTGGTGGTGGCGGAAGAGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10200:1717..2864+

>mRNA_L-elsbetiae_contig10200.248.1 ID=mRNA_L-elsbetiae_contig10200.248.1|Name=mRNA_L-elsbetiae_contig10200.248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig10200:1717..2864+ (Laminarionema elsbetiae ELsaHSoW15)
GGGACGGTTGCGGCAGGAAGCGTCCTGGTTGAGCTGTACTGCGCCATGGT
GGCGTGTATGCCGTTGGCGGCGTTAGCTCAGGGGACGGTTGCGGCAGGAA
GCGTCCTGGTTGAGCTGTACTGCGCCATGGTGGCGTGTATGCCGTTGGCG
GCGTTAGCTCAGGGGGTGCGGCTGCTGACGGCCGGGTCGGCAGGGAGGAG
TATCCTGGGGCTCCCGGCAGCCGGGGGTGGTGACGCCGGCGCCGGGTTAG
TCGGCCCAAGCGCGCAAGGCGCCGCCCGTTTCGCGCTGGCCACCGCCGCC
ACCGGACACGCAATCGTTGCTCTCGCCCTCAAGCTTCTGCAGGGCCGTAC
GGGCGGCGGTGGTGGTGGCGGAAGAGGGGGGGGGGTGCGGCTGCTGACGG
CCGGGTCGGCAGGGAGGAGTATCCTGGGGCTCCCGGCAGCCGGGGGTGGT
GACGCCGGCGCCGGGTTAGTCGGCCCAAGCGCGCAAGGCGCCGCCCGTTT
CGCGCTGGCCACCGCCGCCACCGGACACGCAATCGTTGCTCTCGCCCTCA
AGCTTCTGCAGGGCCGTACGGGCGGCGGTGGTGGTGGCGGAAGAGGGGGG
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