mRNA_L-elsbetiae_contig13165.2477.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13165.2477.1
Unique NamemRNA_L-elsbetiae_contig13165.2477.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13165.2477.1 vs. uniprot
Match: A0A6H5JHN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHN3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.310e-39
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 VEPDKDASNKDNGLLAEAAGMSMGVKSTRKDMVVQVHLNSVTVQDMARPSDSPFRYMMHSTPDGASHGGLIHVTYWASAGRVRRVPPASIADTSQK 288
            VE DKDA+ KD+GLL EAAGMSM VK+T +DM VQ+HL++VTV+D ARP DSPFRYM+HSTPD  SHGGLIH+TYW SAG V  VPPASIADT+QK
Sbjct:  511 VEDDKDAAKKDSGLLMEAAGMSMDVKTTTRDMTVQLHLDAVTVEDRARPDDSPFRYMIHSTPDETSHGGLIHITYWTSAGGVALVPPASIADTNQK 606
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BLAST of mRNA_L-elsbetiae_contig13165.2477.1 vs. uniprot
Match: D8LPW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 2.260e-36
Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    1 VEPDKDASNKDNGLLAEAAGMSMGVKSTRKDMVVQVHLNSVTVQDMARPSDSPFRYMMHSTPDGASHGGLIHVTYWASAGRVRRVPPASIADTSQK 288
            V+ DKDA+ +DNGL  EAAGMSM VK+T +DM VQ+HL++VTVQD ARP DSPFR M++S PD  SHGGLIHVTYWAS G V  VPPASIADT+QK
Sbjct:  859 VQDDKDATQRDNGLFMEAAGMSMDVKTTLRDMTVQLHLDAVTVQDRARPHDSPFRNMIYSKPDETSHGGLIHVTYWASTGGVALVPPASIADTNQK 954
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BLAST of mRNA_L-elsbetiae_contig13165.2477.1 vs. uniprot
Match: A0A6H5L0S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.530e-33
Identity = 64/93 (68.82%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:   10 DKDASNKDNGLLAEAAGMSMGVKSTRKDMVVQVHLNSVTVQDMARPSDSPFRYMMHSTPDGASHGGLIHVTYWASAGRVRRVPPASIADTSQK 288
            D+DA+ +DNGLL EAAGMSM VK+T +D+ VQ+HL++VTVQD ARP +SPFR M++S PD  SHGGLIHVTYWAS G V  VPPASIA T+QK
Sbjct:  248 DEDATQRDNGLLMEAAGMSMDVKTTLRDITVQLHLDAVTVQDRARPHESPFRNMIYSKPDETSHGGLIHVTYWASMGGVALVPPASIAGTNQK 340
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13165.2477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHN3_9PHAE1.310e-3973.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LPW3_ECTSI2.260e-3670.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0S6_9PHAE1.530e-3368.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13165contigL-elsbetiae_contig13165:3614..4076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.4e-33
Seed eggNOG ortholog2880.D7G938
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAutophagy-related, C-terminal
Ec32 orthologEc-15_001910.1
Exons2
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.8252203-CDS-L-elsbetiae_contig13165:3613..36711622815495.8252203-CDS-L-elsbetiae_contig13165:3613..3671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13165 3614..3671 +
1691682926.516551-CDS-L-elsbetiae_contig13165:3613..36711691682926.516551-CDS-L-elsbetiae_contig13165:3613..3671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13165 3614..3671 +
1622815495.85106-CDS-L-elsbetiae_contig13165:3841..40741622815495.85106-CDS-L-elsbetiae_contig13165:3841..4074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13165 3842..4074 +
1691682926.5268872-CDS-L-elsbetiae_contig13165:3841..40741691682926.5268872-CDS-L-elsbetiae_contig13165:3841..4074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13165 3842..4074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13165.2477.1prot_L-elsbetiae_contig13165.2477.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13165 3614..4074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13165.2477.1

>prot_L-elsbetiae_contig13165.2477.1 ID=prot_L-elsbetiae_contig13165.2477.1|Name=mRNA_L-elsbetiae_contig13165.2477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
VEPDKDASNKDNGLLAEAAGMSMGVKSTRKDMVVQVHLNSVTVQDMARPS
DSPFRYMMHSTPDGASHGGLIHVTYWASAGRVRRVPPASIADTSQKK
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mRNA from alignment at L-elsbetiae_contig13165:3614..4076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13165.2477.1 ID=mRNA_L-elsbetiae_contig13165.2477.1|Name=mRNA_L-elsbetiae_contig13165.2477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=463bp|location=Sequence derived from alignment at L-elsbetiae_contig13165:3614..4076+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAGCCTGACAAAGATGCTTCGAACAAGGACAACGGGCTCCTCGCGGA
GGCGGCAGGTACTCCTGCGTCTGTAAGAGCGGTGCGCCAACTCCGTACAT
ATCAAAACTGTGCGATTCCGCGGGGTTCCCGAGCCATGACATTTCATGTA
TCGTATGTAAGTATATCACGAATCATTTCCACCCAATGTGCCAAAAATGT
CGGCCTATGATGCGCAATGCTGCTGCAGGCATGTCCATGGGCGTCAAGAG
CACCCGCAAGGACATGGTCGTTCAGGTCCACCTGAACTCGGTGACTGTCC
AGGACATGGCCAGGCCGAGCGATTCTCCGTTCAGATACATGATGCACTCC
ACGCCGGACGGTGCGTCGCACGGCGGCCTGATTCACGTCACATACTGGGC
TTCCGCGGGGCGTGTGCGCCGCGTTCCCCCGGCTTCAATCGCCGACACGA
GCCAGAAGAAGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13165:3614..4076+

>mRNA_L-elsbetiae_contig13165.2477.1 ID=mRNA_L-elsbetiae_contig13165.2477.1|Name=mRNA_L-elsbetiae_contig13165.2477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig13165:3614..4076+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAGCCTGACAAAGATGCTTCGAACAAGGACAACGGGCTCCTCGCGGA
GGCGGCAGGTCGAGCCTGACAAAGATGCTTCGAACAAGGACAACGGGCTC
CTCGCGGAGGCGGCAGGCATGTCCATGGGCGTCAAGAGCACCCGCAAGGA
CATGGTCGTTCAGGTCCACCTGAACTCGGTGACTGTCCAGGACATGGCCA
GGCCGAGCGATTCTCCGTTCAGATACATGATGCACTCCACGCCGGACGGT
GCGTCGCACGGCGGCCTGATTCACGTCACATACTGGGCTTCCGCGGGGCG
TGTGCGCCGCGTTCCCCCGGCTTCAATCGCCGACACGAGCCAGAAGAAGG
CATGTCCATGGGCGTCAAGAGCACCCGCAAGGACATGGTCGTTCAGGTCC
ACCTGAACTCGGTGACTGTCCAGGACATGGCCAGGCCGAGCGATTCTCCG
TTCAGATACATGATGCACTCCACGCCGGACGGTGCGTCGCACGGCGGCCT
GATTCACGTCACATACTGGGCTTCCGCGGGGCGTGTGCGCCGCGTTCCCC
CGGCTTCAATCGCCGACACGAGCCAGAAGAAG
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