mRNA_L-elsbetiae_contig13161.2476.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13161.2476.1
Unique NamemRNA_L-elsbetiae_contig13161.2476.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13161.2476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13161contigL-elsbetiae_contig13161:4458..5005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13161.2476.1prot_L-elsbetiae_contig13161.2476.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13161 4611..5005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.5977843-UTR-L-elsbetiae_contig13161:4457..46101622815495.5977843-UTR-L-elsbetiae_contig13161:4457..4610Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13161 4458..4610 +
1691682926.4105797-UTR-L-elsbetiae_contig13161:4457..46101691682926.4105797-UTR-L-elsbetiae_contig13161:4457..4610Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13161 4458..4610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.6097395-CDS-L-elsbetiae_contig13161:4610..47701622815495.6097395-CDS-L-elsbetiae_contig13161:4610..4770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13161 4611..4770 +
1691682926.420342-CDS-L-elsbetiae_contig13161:4610..47701691682926.420342-CDS-L-elsbetiae_contig13161:4610..4770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13161 4611..4770 +
1622815495.6193137-CDS-L-elsbetiae_contig13161:4895..50051622815495.6193137-CDS-L-elsbetiae_contig13161:4895..5005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13161 4896..5005 +
1691682926.4302082-CDS-L-elsbetiae_contig13161:4895..50051691682926.4302082-CDS-L-elsbetiae_contig13161:4895..5005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13161 4896..5005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13161.2476.1

>prot_L-elsbetiae_contig13161.2476.1 ID=prot_L-elsbetiae_contig13161.2476.1|Name=mRNA_L-elsbetiae_contig13161.2476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MNTFWAPNEKALSLPILFRRKSRNAPNGTTWQGVLPPAVVAFKLQRFRSP
QHQRNLGRSGGFSRATSDGRRFFALGYGPGGEFERLPGDC
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mRNA from alignment at L-elsbetiae_contig13161:4458..5005+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13161.2476.1 ID=mRNA_L-elsbetiae_contig13161.2476.1|Name=mRNA_L-elsbetiae_contig13161.2476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=548bp|location=Sequence derived from alignment at L-elsbetiae_contig13161:4458..5005+ (Laminarionema elsbetiae ELsaHSoW15)
GCCATATCCGGGGATTCAGAGTTTTGATTAATTTATTTTGTTTGGCGATA
CATTCAAATAAACATACACGTGTGTTTGAAGCTCGCGTTGCACATCGAGT
GGCAACTGGAAGTTCCAAGAACGTTCCTTGGGGACGGCAGGAACTTAGCA
CGCATGAACACCTTTTGGGCACCTAACGAAAAGGCTCTGAGTCTGCCGAT
CTTGTTTCGACGGAAGAGTAGGAACGCTCCCAACGGAACCACATGGCAGG
GCGTGCTCCCTCCAGCGGTGGTAGCGTTCAAGCTGCAGCGGTTTCGGAGC
CCACAACACCAGAGGTAAGAATACAACACCAGAGGTGAGAATGGCACTTG
TAGGTTGACCTTCTGAAACTTGTCGACATGGATGCAGCCGATTTTGCAAA
GCCTCCTTCTTTTCTGAACCCCCCCTGTGTTTCCCACGGGAACTTGGGGA
GGTCGGGCGGCTTCTCGCGGGCAACAAGCGATGGCCGGCGTTTCTTCGCG
CTGGGATACGGGCCCGGGGGGGAGTTTGAACGACTGCCCGGAGATTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13161:4458..5005+

>mRNA_L-elsbetiae_contig13161.2476.1 ID=mRNA_L-elsbetiae_contig13161.2476.1|Name=mRNA_L-elsbetiae_contig13161.2476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig13161:4458..5005+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACACCTTTTGGGCACCTAACGAAAAGGCTCTGAGTCTGCCGATCTT
GTTTCGACGGAAGAGTAGGAACGCTCCCAACGGAACCACATGGCAGGGCG
TGCTCCCTCCAGCGGTGGTAGCGTTCAAGCTGCAGCGGTTTCGGAGCCCA
CAACACCAGAATGAACACCTTTTGGGCACCTAACGAAAAGGCTCTGAGTC
TGCCGATCTTGTTTCGACGGAAGAGTAGGAACGCTCCCAACGGAACCACA
TGGCAGGGCGTGCTCCCTCCAGCGGTGGTAGCGTTCAAGCTGCAGCGGTT
TCGGAGCCCACAACACCAGAGGAACTTGGGGAGGTCGGGCGGCTTCTCGC
GGGCAACAAGCGATGGCCGGCGTTTCTTCGCGCTGGGATACGGGCCCGGG
GGGGAGTTTGAACGACTGCCCGGAGATTGTGGAACTTGGGGAGGTCGGGC
GGCTTCTCGCGGGCAACAAGCGATGGCCGGCGTTTCTTCGCGCTGGGATA
CGGGCCCGGGGGGGAGTTTGAACGACTGCCCGGAGATTGT
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