mRNA_L-elsbetiae_contig13159.2469.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13159.2469.1
Unique NamemRNA_L-elsbetiae_contig13159.2469.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13159.2469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13159contigL-elsbetiae_contig13159:2738..4352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size761
Cds size729
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13159.2469.1prot_L-elsbetiae_contig13159.2469.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13159 2738..4320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.2254305-CDS-L-elsbetiae_contig13159:2737..34421622815495.2254305-CDS-L-elsbetiae_contig13159:2737..3442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13159 2738..3442 -
1691682926.2238076-CDS-L-elsbetiae_contig13159:2737..34421691682926.2238076-CDS-L-elsbetiae_contig13159:2737..3442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13159 2738..3442 -
1622815495.2393064-CDS-L-elsbetiae_contig13159:4296..43201622815495.2393064-CDS-L-elsbetiae_contig13159:4296..4320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13159 4297..4320 -
1691682926.2331185-CDS-L-elsbetiae_contig13159:4296..43201691682926.2331185-CDS-L-elsbetiae_contig13159:4296..4320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13159 4297..4320 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.2510467-UTR-L-elsbetiae_contig13159:4320..43521622815495.2510467-UTR-L-elsbetiae_contig13159:4320..4352Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13159 4321..4352 -
1691682926.2417946-UTR-L-elsbetiae_contig13159:4320..43521691682926.2417946-UTR-L-elsbetiae_contig13159:4320..4352Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13159 4321..4352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13159.2469.1

>prot_L-elsbetiae_contig13159.2469.1 ID=prot_L-elsbetiae_contig13159.2469.1|Name=mRNA_L-elsbetiae_contig13159.2469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MDDLAQRQATQLRLNAELDAGALATISDMESCLRAPLGRPSNANTKKASG
STNAGIPGNANANASANGSFSRGSNGTARREGPHDNGNSDSTTGNARGAA
FSTTAGRGRGGRGKAKASASASTRAIAVAAVSPVSLSSSGARPAMNASRG
PGGGAAWDSSSGSSNRRSSSGNSNSNNIFSEVNAADDQLFRMEQEATGQP
LGSVSAVAAAAAAAGGGDAGTLSSSSSLFRLSARVKGAARASG
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mRNA from alignment at L-elsbetiae_contig13159:2738..4352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13159.2469.1 ID=mRNA_L-elsbetiae_contig13159.2469.1|Name=mRNA_L-elsbetiae_contig13159.2469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1615bp|location=Sequence derived from alignment at L-elsbetiae_contig13159:2738..4352- (Laminarionema elsbetiae ELsaHSoW15)
CTTGAGCAGGCACATTCACACCACCTCAAACCATGGACGACCTTGCGCAG
CGACAGGTGCGTCTTTGCTCTCTCTTCCCAATCCAGTGCTGCCAATGCTT
CTTGCAGTCGTCGATCCGCACATAAGCACGAACGCGCAGCATTTACCTCT
TCCATTTGTATGTAGGTTGCTGTCCCTCCGCAAACAAACTCACCGTCATG
TTTATTAGGAACAGGCGGCACGCATCGCCTGAGACGTGCATAGTGCAGCT
GAGCCACAAGTTATTTCCCTCTCGACCTCTTTCACGACCGATAGAGTTAT
AGAAAAAACGCTGGTCGCAATCGATGGCGTCCGGTTGCTTCCTCTCCCGC
ACGCGGATCCGCATGGCATCGTCTCTCAGGATCGGATCCAGGCCGCTGGC
GCGGTTTGTCGGTTCGTTTGGATATCATATACATACATACGTCGCATATA
CCGTACGAGGTTATTTTTGCGATTGCATCATACAGTAGAAGGTCTGCGGT
TGAATACACCCGGGTTTAGAATGAACCAACTCTCCGTTCACGCTGGGGCG
CTTGCACAGCAGTCCTGAAATTCAATTGATCTCCTCACGGGGCCCCCGGT
CGTCCAGCGGCGTATGGACAAGTGGGTCAGGTGTGCTGTTATGTTTTGTC
CCAAAACGCTTGCATTCGCCGCTGAGACTGATGTCAATTTTGATGGACCA
ATCGGCGGGCGCGATCGATGTTGGGATGTACATAAATGCAGCCAACAGAC
TATCTACGTATCTAATGTAGGAGTATTATCTACTGGTTGTACATTAGGGT
ACATATTTAGTAGAAACCGCAACCCACGCAGGACGTGACTGTTATACATA
CCTACAGCAACACTTTGTCAGCGGGAGTCTCCTATTCGCTGTTGTGTTCC
TGTTCTCCAGGCAACGCAGCTGCGACTCAACGCGGAGCTAGATGCCGGTG
CTCTCGCCACCATATCCGATATGGAGAGCTGCCTCCGTGCTCCGCTCGGC
CGGCCCTCCAACGCCAACACCAAGAAAGCCAGCGGTAGCACCAACGCCGG
CATCCCCGGCAACGCCAACGCCAACGCCAGCGCCAACGGTAGTTTCAGCC
GTGGCAGCAACGGTACAGCTAGAAGGGAAGGGCCTCATGACAACGGCAAC
AGCGATAGCACCACCGGTAACGCCAGAGGTGCTGCTTTTTCGACGACGGC
TGGGCGAGGAAGAGGGGGGCGGGGGAAAGCAAAGGCGTCGGCGTCAGCAT
CAACGCGAGCGATAGCAGTGGCGGCGGTGTCACCGGTGTCATTGTCCAGC
TCGGGGGCGCGGCCCGCCATGAACGCTTCGAGAGGCCCAGGGGGCGGTGC
GGCATGGGACAGCTCGAGCGGCAGTAGCAACCGCCGCAGCAGCAGCGGCA
ACAGCAACAGCAACAACATATTCAGCGAAGTCAACGCGGCCGACGATCAG
CTGTTCAGGATGGAACAGGAGGCAACGGGGCAGCCCCTCGGTTCGGTTTC
GGCAGTGGCGGCGGCGGCGGCGGCGGCGGGGGGTGGCGACGCAGGCACGC
TTTCGAGCTCGTCTTCGCTGTTTCGCCTCTCGGCGAGGGTGAAGGGAGCG
GCCAGGGCTTCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13159:2738..4352-

>mRNA_L-elsbetiae_contig13159.2469.1 ID=mRNA_L-elsbetiae_contig13159.2469.1|Name=mRNA_L-elsbetiae_contig13159.2469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig13159:2738..4352- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGACCTTGCGCAGCGACAGATGGACGACCTTGCGCAGCGACAGGC
AACGCAGCTGCGACTCAACGCGGAGCTAGATGCCGGTGCTCTCGCCACCA
TATCCGATATGGAGAGCTGCCTCCGTGCTCCGCTCGGCCGGCCCTCCAAC
GCCAACACCAAGAAAGCCAGCGGTAGCACCAACGCCGGCATCCCCGGCAA
CGCCAACGCCAACGCCAGCGCCAACGGTAGTTTCAGCCGTGGCAGCAACG
GTACAGCTAGAAGGGAAGGGCCTCATGACAACGGCAACAGCGATAGCACC
ACCGGTAACGCCAGAGGTGCTGCTTTTTCGACGACGGCTGGGCGAGGAAG
AGGGGGGCGGGGGAAAGCAAAGGCGTCGGCGTCAGCATCAACGCGAGCGA
TAGCAGTGGCGGCGGTGTCACCGGTGTCATTGTCCAGCTCGGGGGCGCGG
CCCGCCATGAACGCTTCGAGAGGCCCAGGGGGCGGTGCGGCATGGGACAG
CTCGAGCGGCAGTAGCAACCGCCGCAGCAGCAGCGGCAACAGCAACAGCA
ACAACATATTCAGCGAAGTCAACGCGGCCGACGATCAGCTGTTCAGGATG
GAACAGGAGGCAACGGGGCAGCCCCTCGGTTCGGTTTCGGCAGTGGCGGC
GGCGGCGGCGGCGGCGGGGGGTGGCGACGCAGGCACGCTTTCGAGCTCGT
CTTCGCTGTTTCGCCTCTCGGCGAGGGTGAAGGGAGCGGCCAGGGCTTCG
GGGGCAACGCAGCTGCGACTCAACGCGGAGCTAGATGCCGGTGCTCTCGC
CACCATATCCGATATGGAGAGCTGCCTCCGTGCTCCGCTCGGCCGGCCCT
CCAACGCCAACACCAAGAAAGCCAGCGGTAGCACCAACGCCGGCATCCCC
GGCAACGCCAACGCCAACGCCAGCGCCAACGGTAGTTTCAGCCGTGGCAG
CAACGGTACAGCTAGAAGGGAAGGGCCTCATGACAACGGCAACAGCGATA
GCACCACCGGTAACGCCAGAGGTGCTGCTTTTTCGACGACGGCTGGGCGA
GGAAGAGGGGGGCGGGGGAAAGCAAAGGCGTCGGCGTCAGCATCAACGCG
AGCGATAGCAGTGGCGGCGGTGTCACCGGTGTCATTGTCCAGCTCGGGGG
CGCGGCCCGCCATGAACGCTTCGAGAGGCCCAGGGGGCGGTGCGGCATGG
GACAGCTCGAGCGGCAGTAGCAACCGCCGCAGCAGCAGCGGCAACAGCAA
CAGCAACAACATATTCAGCGAAGTCAACGCGGCCGACGATCAGCTGTTCA
GGATGGAACAGGAGGCAACGGGGCAGCCCCTCGGTTCGGTTTCGGCAGTG
GCGGCGGCGGCGGCGGCGGCGGGGGGTGGCGACGCAGGCACGCTTTCGAG
CTCGTCTTCGCTGTTTCGCCTCTCGGCGAGGGTGAAGGGAGCGGCCAGGG
CTTCGGGG
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