mRNA_L-elsbetiae_contig13150.2466.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13150.2466.1
Unique NamemRNA_L-elsbetiae_contig13150.2466.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13150.2466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13150contigL-elsbetiae_contig13150:1313..4977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size278
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13150.2466.1prot_L-elsbetiae_contig13150.2466.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13150 1313..4952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.4652379-CDS-L-elsbetiae_contig13150:1312..13481622815494.4652379-CDS-L-elsbetiae_contig13150:1312..1348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13150 1313..1348 +
1691682926.0978224-CDS-L-elsbetiae_contig13150:1312..13481691682926.0978224-CDS-L-elsbetiae_contig13150:1312..1348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13150 1313..1348 +
1622815495.0107002-CDS-L-elsbetiae_contig13150:4062..40961622815495.0107002-CDS-L-elsbetiae_contig13150:4062..4096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13150 4063..4096 +
1691682926.1068127-CDS-L-elsbetiae_contig13150:4062..40961691682926.1068127-CDS-L-elsbetiae_contig13150:4062..4096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13150 4063..4096 +
1622815495.0226703-CDS-L-elsbetiae_contig13150:4770..49521622815495.0226703-CDS-L-elsbetiae_contig13150:4770..4952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13150 4771..4952 +
1691682926.1158686-CDS-L-elsbetiae_contig13150:4770..49521691682926.1158686-CDS-L-elsbetiae_contig13150:4770..4952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13150 4771..4952 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.0335295-UTR-L-elsbetiae_contig13150:4952..49771622815495.0335295-UTR-L-elsbetiae_contig13150:4952..4977Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13150 4953..4977 +
1691682926.1282392-UTR-L-elsbetiae_contig13150:4952..49771691682926.1282392-UTR-L-elsbetiae_contig13150:4952..4977Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13150 4953..4977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13150.2466.1

>prot_L-elsbetiae_contig13150.2466.1 ID=prot_L-elsbetiae_contig13150.2466.1|Name=mRNA_L-elsbetiae_contig13150.2466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
SPCRTDSRSTTPARLRQRVAAPAATSASAGEEARARAPPAAAADAARSKE
RHPARINVGPRIKRRTTALCTMAQRRVPLLLLL*
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mRNA from alignment at L-elsbetiae_contig13150:1313..4977+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13150.2466.1 ID=mRNA_L-elsbetiae_contig13150.2466.1|Name=mRNA_L-elsbetiae_contig13150.2466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3665bp|location=Sequence derived from alignment at L-elsbetiae_contig13150:1313..4977+ (Laminarionema elsbetiae ELsaHSoW15)
TCACCATGTCGAACGGACTCAAGATCAACGACGCCGGTAAGTGGCATATC
TCACTTCTTGGGGCGGCGCGTATACTAACTGACACGCACGCACGCCACGA
GCACGTATCTTTTCTGCTCTCTTCTCTCTAATCCGCCCCCTTGAGTAGTA
GGGGTTTGATGTGAGCCCTGCTTCCACGTTTGTCCGTGGGAAGGAGAGGG
GTGCGAGAGAATGGGTGCGAGAGAGCGGTGTTCTCTGGGCGTGTTTTCGG
ATAGATAGATACACCCTAGGATCCGTGTCTCTTTTGTCTATCCGTGTCTC
CTCTCGTCGTGGACATGGGTTGTTGAAGTTGTAACCGCAGCAAGAGAAGC
GATAGGTTGCATGTGTTGCGTGCGTTGCGTGTGCCACGCCCCTAGTTTAT
CTGGCACTCGAGAAAGGCCGGTAGTCTCAATTCTATCGGTCTCAAATTTG
TGTACGATCTTCCCAATCGAAAGTGGCCCATTTGGTGGCGGTACGAAGAG
ATAGAGTTGCTGCTGGGCCTGCCTGTAGTTTCGTGTCACACCTGCCGCAA
CATGTTTTTGTTTTTTTGCTCGTCACTATTCACATAGGAGTAATAAACAG
GAAACACCGGTGTGGAACGTCGAGTTTGCTTCGGGAAGGCGTTGTATAAA
TGTCAATTACTGTCGCATGCATTCTAGCGTCTGGTCTCTCTCTACCATTT
CCATAATAATCGACGTAGAATGCACCACGCACGAAGTAGGAGGTATGATG
CGTCATAGGCCCCCCTGCTGACATAGTCCTCGGCCAATCGGAAAAAATGA
AAACACCGACATTTTTTTATAGTTTTCCGACCGTTCGCTTGCCTGCCAGC
TTGCCTGTCTGTCTGCGTGCCTGCCTGCCTGCTCGCTTGTACAAATGTAC
ACAATCTGCGAAAGAGCTTCACGAAAAGTACCGATCGATGTGGAACTTGA
TGGATGTTCGCAATGTAGATACAATACGCCCACCCACCCGATTTTACCAG
TGTTTGGGTTCGTGGACGAGTCTTCCCTGAGATACGCGCAGGAACCAAAA
GAACGCGCGACACACCACCACACGCACTTCAACATGCATCGTAAGAAGTG
CTCTCCTCTCTTGGGCAACGCACATACATAATAGGAGTATGTAGATCATC
TCACAATCGGCATACTACCCGGACGTTTTAAGTGCAGCGCTCGCGGGGCA
TCTATAGTCTATATAATATATATATCATGTGTCAAAAGTTGTGATCGTAT
CTACACATAGACTATATGCAGTCATGCAAGAAAGGTCCCCCCCCTGAGGC
TCCCACACCCAGTACGCTGCCCTCTGCGGCGCTTGCCTTTCGTCGATTTT
TGATGCATGAAGAGTTCTTCAATCTCTTCTCAGACTTTCGTTTTTTTTTC
TTCGTTCACATTTTATTTCCGGCGCTCGAAGGACTCTCGCCATGAGGGGG
CATCTTGCATGAGCTCTGAACCGTGGTCCCATATAGATAACAAGGTTCCT
CTCCCTGAGGCTCCCCCCCCCCCCCCCCCCCCGGGTCTGGCGTGTCTTTT
TTTTTGTTTTTTTGGGGGGAAAATGTTTGGCGCTTGTTCCGTCTTGTGTG
NNNNNNNNNNTCCCCAAGGGGGGGGCTGTGGTGGGGGGTTGTGGCGGGGG
GCCCCTATGGGTGCCAACGCTCCCTCCCCCGGGGCCCCCCCCCCCCCCCC
CCTTGCGGTGCTTGCCTTTAAGTTTTTGAGTTTTTAGGCGAGAATAATTT
CGGCCGTCTCTGCCCTTAAGTGTACACACGAACTAGCGTTTGATCCACTT
GACAGGAACGAAAGCGAGAGAACAAATTCAGATCTTGTCAGGAAAAAGTA
GCTCAAGCCCGGGTGCTCGAACTCATGACCTGCTGCCTGCGATGTAGAAG
GTTTGCGGGGGTTACATTCCAACTAGACTCCCCAGACTGCTGCTGCTGTG
CATTAAAATTCCCTAAGCTCGCCAATTTCCGTCATTTTTTTCAAAAAGCC
AAAGGACCGTGACGTCGTGCACCGAAAAGTCCTTTCCGAATATGTACCCC
CCTCTTGACACAACCCCTTTTCAGCCCGCCCTGCAACGAAGTCGGAGCCG
CTTGTCAACAACAGTGTTTGGTTTGACACCGTGGAAATGACACGCCTCTA
AATAGATGGCAGTACCCCGCCGTGCCACGGAGAACCAAACTTTATTCTTG
TACGTATTTGTTTTTGTGGATTTGGTTCCGTCTCGGGGGGCGGGATGAGA
TGACCGCAAAATCAACGCAACGTCTTATGTAGCGACACTGCAGTCTTGAT
AGACTTCAGCACTTATAGAACTCTACAAGAGGGTTATACAAGATAACCAG
AGGGTGTATCCAGGGAGTGTGTCTCCCCGGTTGGTGATGTCGGCTTGACC
GGTTATATACTAGAGGGCTCCCACACTATTTATCTTTGACTTTTATCGCT
CCGCTGATCCTTTGGGTCCATTCTACTTTGGTGTATTGTACTTTTCTTAA
GTACTTTGCAAGTTAGCCTCTGACCATGAGAATCGACCGCATCAAGTGTA
CGGACATTAACAGTCATATAAGGAAGTACTGGGTGGAGAGATCGGAGCGG
TTTAAATGTGAAGACAACAACAACAACTCCACCGCTACGTTGCTTTCTAT
GAGGTGCGGCATGCACATACCTCGCCGCTTTTCAGCTTCTCTTGTTCCTG
TTCGAAATAACCCCACCACCTCCGTACGCCGCGCATTCTGTACTTCTCAG
GCTCGCCTCAGGCAGCGGGTGGCTGCCCCTGCGGGTGAGTGGAAATCCGT
TCGGCGTTTTTTTTCCCGTGAACCCACTCCGCGCGGGCGGGGTGGCAGGT
TGCGTACCACACGCTGTGCATTGGGGCTAGTTCCAAATGATCAAAACATA
TCTACCCATGTACAATGTACGGAGTGTGACACAGGCATCGTTTTTGCTAT
ATATTTTAGTTTTTTTTTGTCTTGTAACATCTTTGGGTGTATGTATCTAC
ACTGGATATACTTCTACATATTAACTCAGCCTCGGGTGGTCGGTAGGAGG
GGGGCTAAAAGCCCGTTGCCACCTCGCGCCGTCTGGGTGTTAAATCACTG
CTCGCTTGCGGGATATATATGGTTTCTCTGGACATGCGTACGATTTTCTT
GATTCATGGGAAGGGGTGGGGGGTGGTCGGGAGGAATCACTTGTGCCGTG
AGACCTTCCCTCCCGTCTTGACGTGCAGATTTTGGCCCCCAAGAGAGGTG
TTCCTCTCGCGCACAGGGCATGCCAACTAAAACTTTCTCTGCACTTCAGC
CACCGCGGAAGTCATGTCCGTCCGTGCTCGATCTATGTAGTGCTGTCCCC
GCGCTAAAATCTGCAACCGGCGTGTCTGTGATTGACATGATTTTTACACT
ACTACTACCGCTGCCCTTGTTTTGGCCGCGTTGCATGACGTGCTTTCGAA
ATCGGCAGCGACAAGTGCAAGTGCGGGGGAGGAGGCTCGTGCACGTGCAC
CGCCAGCGGCTGCTGCGGATGCGGCAAGAAGTAAAGAGCGCCACCCCGCT
CGCATCAACGTAGGGCCCAGGATCAAACGACGAACGACGGCACTATGCAC
AATGGCCCAGCGGCGTGTTCCTCTACTCTTATTGCTGTAGCTGGTTGAGG
CTAGTCGGCGTTGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13150:1313..4977+

>mRNA_L-elsbetiae_contig13150.2466.1 ID=mRNA_L-elsbetiae_contig13150.2466.1|Name=mRNA_L-elsbetiae_contig13150.2466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig13150:1313..4977+ (Laminarionema elsbetiae ELsaHSoW15)
TCACCATGTCGAACGGACTCAAGATCAACGACGCCGTCACCATGTCGAAC
GGACTCAAGATCAACGACGCCGGCTCGCCTCAGGCAGCGGGTGGCTGCCC
CTGCGGGCTCGCCTCAGGCAGCGGGTGGCTGCCCCTGCGGCGACAAGTGC
AAGTGCGGGGGAGGAGGCTCGTGCACGTGCACCGCCAGCGGCTGCTGCGG
ATGCGGCAAGAAGTAAAGAGCGCCACCCCGCTCGCATCAACGTAGGGCCC
AGGATCAAACGACGAACGACGGCACTATGCACAATGGCCCAGCGGCGTGT
TCCTCTACTCTTATTGCTGTAGCGACAAGTGCAAGTGCGGGGGAGGAGGC
TCGTGCACGTGCACCGCCAGCGGCTGCTGCGGATGCGGCAAGAAGTAAAG
AGCGCCACCCCGCTCGCATCAACGTAGGGCCCAGGATCAAACGACGAACG
ACGGCACTATGCACAATGGCCCAGCGGCGTGTTCCTCTACTCTTATTGCT
GTAG
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