mRNA_L-elsbetiae_contig13129.2458.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13129.2458.1
Unique NamemRNA_L-elsbetiae_contig13129.2458.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13129.2458.1 vs. uniprot
Match: D7FTC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC4_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.840e-13
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 LDQDPVFRVRKATALNLDKIIKVVGEAGISRLLPAYVRLT 120
            L +DPVFRVRKATALNLDKI KVVGEAGI+RLLPAY+RLT
Sbjct:  191 LSEDPVFRVRKATALNLDKICKVVGEAGIARLLPAYLRLT 230
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BLAST of mRNA_L-elsbetiae_contig13129.2458.1 vs. uniprot
Match: A0A6H5JCV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.870e-13
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 LDQDPVFRVRKATALNLDKIIKVVGEAGISRLLPAYVRL 117
            L +DPVFRVRKATALNLDKI KVVGEAGI+RLLPAYVRL
Sbjct:  191 LSEDPVFRVRKATALNLDKICKVVGEAGIARLLPAYVRL 229
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BLAST of mRNA_L-elsbetiae_contig13129.2458.1 vs. uniprot
Match: A0A2R5GM29_9STRA (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM29_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.730e-7
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 LDQDPVFRVRKATALNLDKIIKVVGEAGISRLLPAYVRLTKDDVYRVRR 147
            L QDP F+VRKA AL++DKI++V     + RLLPAY RL+KD ++ VR+
Sbjct:  219 LSQDPSFKVRKAVALSMDKIMRVAHTCSV-RLLPAYERLSKDSIWGVRK 266
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BLAST of mRNA_L-elsbetiae_contig13129.2458.1 vs. uniprot
Match: A0A836CCL0_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL0_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 9.130e-5
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 LDQDPVFRVRKATALNLDKIIKVVGEAGI-SRLLPAY 108
            L +DPVFRVRKATALNL  + +VVG A    RLLPAY
Sbjct:   23 LGEDPVFRVRKATALNLHNVCRVVGAADSRDRLLPAY 59
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13129.2458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTC4_ECTSI1.840e-1387.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCV5_9PHAE2.870e-1389.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GM29_9STRA1.730e-755.10Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A836CCL0_9STRA9.130e-567.57Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13129contigL-elsbetiae_contig13129:4732..4902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue5.9e-11
Seed eggNOG ortholog2880.D7FTC4
Preferred namePPP4R1
KEGG koko:K15424,ko:K15426
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.3626597-CDS-L-elsbetiae_contig13129:4731..49021622815493.3626597-CDS-L-elsbetiae_contig13129:4731..4902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13129 4732..4902 -
1691682925.4633887-CDS-L-elsbetiae_contig13129:4731..49021691682925.4633887-CDS-L-elsbetiae_contig13129:4731..4902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13129 4732..4902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13129.2458.1prot_L-elsbetiae_contig13129.2458.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13129 4732..4902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13129.2458.1

>prot_L-elsbetiae_contig13129.2458.1 ID=prot_L-elsbetiae_contig13129.2458.1|Name=mRNA_L-elsbetiae_contig13129.2458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
LDQDPVFRVRKATALNLDKIIKVVGEAGISRLLPAYVRLTKDDVYRVRRG
EESRGR*
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mRNA from alignment at L-elsbetiae_contig13129:4732..4902-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13129.2458.1 ID=mRNA_L-elsbetiae_contig13129.2458.1|Name=mRNA_L-elsbetiae_contig13129.2458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=171bp|location=Sequence derived from alignment at L-elsbetiae_contig13129:4732..4902- (Laminarionema elsbetiae ELsaHSoW15)
CTTGATCAGGATCCTGTGTTTCGCGTGCGGAAGGCGACGGCGCTTAACTT
GGACAAGATCATCAAGGTGGTAGGGGAGGCGGGGATATCGCGCCTGTTGC
CCGCCTACGTCCGTCTCACCAAGGATGACGTATACAGGGTGAGGAGAGGA
GAAGAGAGTCGAGGACGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13129:4732..4902-

>mRNA_L-elsbetiae_contig13129.2458.1 ID=mRNA_L-elsbetiae_contig13129.2458.1|Name=mRNA_L-elsbetiae_contig13129.2458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig13129:4732..4902- (Laminarionema elsbetiae ELsaHSoW15)
CTTGATCAGGATCCTGTGTTTCGCGTGCGGAAGGCGACGGCGCTTAACTT
GGACAAGATCATCAAGGTGGTAGGGGAGGCGGGGATATCGCGCCTGTTGC
CCGCCTACGTCCGTCTCACCAAGGATGACGTATACAGGGTGAGGAGAGGA
GAAGAGAGTCGAGGACGCTAGCTTGATCAGGATCCTGTGTTTCGCGTGCG
GAAGGCGACGGCGCTTAACTTGGACAAGATCATCAAGGTGGTAGGGGAGG
CGGGGATATCGCGCCTGTTGCCCGCCTACGTCCGTCTCACCAAGGATGAC
GTATACAGGGTGAGGAGAGGAGAAGAGAGTCGAGGACGCTAG
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