mRNA_L-elsbetiae_contig13108.2447.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13108.2447.1
Unique NamemRNA_L-elsbetiae_contig13108.2447.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 5.140e-100
Identity = 170/205 (82.93%), Postives = 179/205 (87.32%), Query Frame = 1 
Query:  142 AGSVDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPKLEDGLRLVVRNEHIQAAXXXXXXXXXXXX----VVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRDGVSSV 744
            AGSVDEVTV KRRAKVG+LKQQL SVLEG RQLEAGV ACEGRMHEAN+A YASVRGELR+LFGA+C NKSADLVMAGPKLEDG+RLVVRN + QA                 VVER+PQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFR+GQALCVSHHA+FHRQSGHCVAVEMRDGVS V
Sbjct:  479 AGSVDEVTVSKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCHNKSADLVMAGPKLEDGIRLVVRNGNTQAVAAATITTTTPSSAVPAVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRV 683
[Close]
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 2.690e-95
Identity = 183/214 (85.51%), Postives = 191/214 (89.25%), Query Frame = 1 
Query:  136 VAAGSVDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPKLEDGLRLVVRNEHIQAAXXXXXXXXXXXX-----------VVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRDGVSSV 744
            V AGSVDEVTV KRRAKVG+LKQQL SVLEG RQLEAGV ACEGRMHEAN+A YASVRGELR+LFGA+C NKSADLVMAGPKLEDGLRLVVRN + QA XXXXXXXXXXXX           VVER+PQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFR+GQALCVSHHA+FHRQSGHCV VEMRDGVS V
Sbjct:  951 VVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLEDGLRLVVRNGNTQAXXXXXXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVPVEMRDGVSRV 1164
[Close]
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.060e-27
Identity = 87/226 (38.50%), Postives = 104/226 (46.02%), Query Frame = 1 
Query:  151 VDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPKLEDGLRLVVRNEHIQAAXXXXXXXXXXXXVVE--------------------------RSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRDGVSSVRP 750
            VD   VR RR+ V  LKQQL  V E    LE G    +G M  AN A YA+VRGE R L  A+   K+ADL+    +      +        A             + +                          +S +ELSGGQQ+LLGLA V ALS+Y A PL LLDEVDAALD  NQ   A L+   FR  Q LCVSHHA     +   V V M  G S + P
Sbjct: 1076 VDATQVRLRRSTVETLKQQLNMVREAMSHLEGGAILIQGHMEAANAACYAAVRGEFRRLLSALMPTKAADLLRDAARHALAFTVTNLTSSSSAQRDAPAAVHDAMDISDDEXXXXXXXXXXXXXXXXXXXXXXXXKSARELSGGQQSLLGLAFVFALSAYHAAPLYLLDEVDAALDAANQRRVAALLPRAFRGAQVLCVSHHAATQALATRRVRVAMEKGSSRIVP 1301
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BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: F0WC70_9STRA (Chromosome segregation protein Smc putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WC70_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.770e-20
Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 1 
Query:  151 VDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPKLEDGLRLVVRNEHIQAAXXXXXXXXXXXXVVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHH 678
            V   ++ +++  +   + Q A +L   R LE GV++ + +    N+ A+ S+    + +F     +K A + + G K+E G+   V+++                  + +S +E+SGGQ ALLG++ + AL+S  A PLC+LDE+DAALDE NQA  A L A  F   Q +CVSHH
Sbjct:  307 VSNGSLMQKQQALSEFESQAAKILIAVRNLEEGVRSTDEKTTRVNQLAFESIARRFQQIFEQAIPSKRAIMALRGEKVELGIEFRVQDQSSN---------------LTKSTKEMSGGQLALLGMSYIFALASCSASPLCILDEIDAALDEQNQAIIASLAASNFSSIQVICVSHH 467
[Close]
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: A0A024GMI1_9STRA (SMC_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMI1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.460e-16
Identity = 59/186 (31.72%), Postives = 90/186 (48.39%), Query Frame = 1 
Query:  205 QLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPKLEDGLRLVVRNEH---IQAAXXXXXXXXXXXXVVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRDGVSSVRPQ 753
            Q A V      LE G++  + +    N+ A+ S+    + +F     +K A L ++  K+E  +   +       I                + ++   LSGGQ ALLG++ + AL+S  A PLC+LDE+DAALDE NQ   A L A  FR  Q +CVSHH   H ++   + V  +D  S++  Q
Sbjct: 1126 QAAKVAIAVTNLEDGIRTTDEQTTWVNQLAFKSIANRFQHIFEQAIPSKRAFLELSDEKVEVSVEDWMDTHETLRILFKFGVEFKVQDRSHSLIKATNTLSGGQLALLGMSYIFALASCSAIPLCILDEIDAALDEQNQENVAALAASNFRSIQVICVSHHKAMHNKAQQLIQVRKKDTTSAITRQ 1311
[Close]
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: A0A6H9Y306_9PROT (Chromosome partition protein Smc n=1 Tax=Betaproteobacteria bacterium SCN2 TaxID=2651628 RepID=A0A6H9Y306_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 1.650e-11
Identity = 62/201 (30.85%), Postives = 93/201 (46.27%), Query Frame = 1 
Query:  148 SVDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPKLED-GLRLVVRNEHIQAAXXXXXXXXXXXXVVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRD-GVSSV 744
            ++DE+T  + R     L  Q A +LE    LEA +K  +    E  KA + +V   L  LF        A+LV+ G +L D G++++ +    + A                S   LSGG++AL  L+LV AL      P CLLDEVDA LD+ N    + +V     + Q L ++H+      + H   V M + GVS +
Sbjct:  970 ALDELTEAQERGTY--LANQHADLLEATNTLEAAIKKIDQETRELLKATFDTVNANLGELFPQFFGGGRAELVLTGEELLDAGVQIIAQPPGKKNA----------------SIHLLSGGEKALTALSLVFALFKLNPAPFCLLDEVDAPLDDANTVRYSEMVKRMSSETQFLFITHNRITMEMAQHLAGVTMNEPGVSRI 1152
[Close]
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: A0A2M7FVM8_9BURK (Chromosome partition protein Smc n=2 Tax=unclassified Comamonadaceae TaxID=83494 RepID=A0A2M7FVM8_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 9.960e-11
Identity = 57/201 (28.36%), Postives = 95/201 (47.26%), Query Frame = 1 
Query:  148 SVDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPK-LEDGLRLVVRNEHIQAAXXXXXXXXXXXXVVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRD-GVSSV 744
            ++DE+   + R   G L  Q A ++E    LE  +K  +G   E     + +V G    +F  +    +A LV+ G + L+ G++++ +    +                 +S   LSGG++AL  +ALV A+      P CLLDEVDA LD+ N    A+LV+    + Q L +SH+      +   + V M++ GVS +
Sbjct:  974 ALDELAAARERK--GFLDAQSADLVEAMTTLEDAIKKIDGETRELLSGTFNTVNGHFGKMFPELFGGGNARLVITGEEILDSGVQVIAQPPGKK----------------NQSIALLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVSRMSHETQFLFISHNKIAMEMAQQLIGVTMQEQGVSRI 1156
[Close]
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: A0A4V0X8L4_9BURK (Chromosome partition protein Smc n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4V0X8L4_9BURK)

HSP 1 Score: 71.6 bits (174), Expect = 1.810e-10
Identity = 63/215 (29.30%), Postives = 98/215 (45.58%), Query Frame = 1 
Query:  121 ASQAVVAAGSVDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPK-LEDGLRLVV-----RNEHIQAAXXXXXXXXXXXXVVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRD-GVSSV 744
            AS   V   ++DE+T  + R +   L  Q A + E    LE  ++  +G   E     + SV       F  +    +A L + G + L+ G++++      +N+ IQ                      LSGG++AL  +ALV A+      P CLLDEVDA LD++N    ARLVA   R+ Q L +SH+      +   + V M++ GVS +
Sbjct:  965 ASLGAVNLAALDELTAARERKQF--LDSQSADLNEAMSTLEDAIRKIDGETRELLSGTFNSVNEHFGKTFPELFGGGNARLAITGDEILDSGVQVIAQPPGKKNQTIQL---------------------LSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDSNTERYARLVARMSRETQFLFISHNKIAMEMAEQLIGVTMQEQGVSRI 1156
[Close]
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: A0A1P8JW63_9BURK (Chromosome partition protein Smc n=1 Tax=Rhodoferax koreense TaxID=1842727 RepID=A0A1P8JW63_9BURK)

HSP 1 Score: 71.6 bits (174), Expect = 1.810e-10
Identity = 59/206 (28.64%), Postives = 96/206 (46.60%), Query Frame = 1 
Query:  148 SVDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPK-LEDGLRLVV-----RNEHIQAAXXXXXXXXXXXXVVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRD-GVSSV 744
            ++DE+TV + R +   L  Q A ++E    LE  ++  +G   E     + +V      +F  +    +A LV+ G + L+ G+++V      +N+ I                       LSGG++AL  +ALV A+      P CLLDEVDA LD+ N    A+LVA   +  Q L +SH+      +   + V M++ GVS +
Sbjct:  978 ALDELTVARERKQF--LDAQTADLVEAMTTLEDAIRKIDGETRELLSGTFNTVNAHFGKMFPELFGGGNARLVITGDEILDSGVQVVAQPPGKKNQTIHL---------------------LSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVASMSKQTQFLFISHNKIAMEMAEQLIGVTMQEQGVSRI 1160
[Close]
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Match: A0A6P1IU75_9BURK (Chromosome partition protein Smc n=10 Tax=Betaproteobacteria TaxID=28216 RepID=A0A6P1IU75_9BURK)

HSP 1 Score: 71.2 bits (173), Expect = 2.440e-10
Identity = 58/206 (28.16%), Postives = 95/206 (46.12%), Query Frame = 1 
Query:  148 SVDEVTVRKRRAKVGVLKQQLASVLEGARQLEAGVKACEGRMHEANKAAYASVRGELRTLFGAICANKSADLVMAGPKLED-GLRLVV-----RNEHIQAAXXXXXXXXXXXXVVERSPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVEMRD-GVSSV 744
            ++DE+T  + R     L  Q A ++E    LE  +K  +    E   + + +V G    +F  +    +A L+M G ++ D G++++      +N+ I                       LSGG++AL  +ALV A+      P CLLDEVDA LD+ N    A+LV    +D Q L +SH+      +   + V M++ GVS +
Sbjct:  975 ALDELTAARERKTF--LDAQTADLVEAMNTLEDAIKKIDNETRELLGSTFETVNGHFGRMFPELFGGGNAKLMMTGEEILDAGVQVMAQPPGKKNQTIHL---------------------LSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVTAMSKDTQFLFISHNKIAMEMAKQLIGVTMQEQGVSRI 1157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13108.2447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDH3_9PHAE5.140e-10082.93SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQC9_ECTSI2.690e-9585.51SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CK59_9STRA1.060e-2738.50P-loop containing nucleoside triphosphate hydrolas... [more]
F0WC70_9STRA3.770e-2033.52Chromosome segregation protein Smc putative n=1 Ta... [more]
A0A024GMI1_9STRA2.460e-1631.72SMC_N domain-containing protein n=1 Tax=Albugo can... [more]
A0A6H9Y306_9PROT1.650e-1130.85Chromosome partition protein Smc n=1 Tax=Betaprote... [more]
A0A2M7FVM8_9BURK9.960e-1128.36Chromosome partition protein Smc n=2 Tax=unclassif... [more]
A0A4V0X8L4_9BURK1.810e-1029.30Chromosome partition protein Smc n=1 Tax=Comamonad... [more]
A0A1P8JW63_9BURK1.810e-1028.64Chromosome partition protein Smc n=1 Tax=Rhodofera... [more]
A0A6P1IU75_9BURK2.440e-1028.16Chromosome partition protein Smc n=10 Tax=Betaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13108contigL-elsbetiae_contig13108:655..5136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.9e-62
Seed eggNOG ortholog2880.D7FQC9
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0008278,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030892,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1903047,GO:1990837
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0933@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons5
Model size783
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.9961681-UTR-L-elsbetiae_contig13108:654..6781622815491.9961681-UTR-L-elsbetiae_contig13108:654..678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13108 655..678 -
1691682924.7984588-UTR-L-elsbetiae_contig13108:654..6781691682924.7984588-UTR-L-elsbetiae_contig13108:654..678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13108 655..678 -
1622815492.052899-UTR-L-elsbetiae_contig13108:3265..32701622815492.052899-UTR-L-elsbetiae_contig13108:3265..3270Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13108 3266..3270 -
1691682924.8410044-UTR-L-elsbetiae_contig13108:3265..32701691682924.8410044-UTR-L-elsbetiae_contig13108:3265..3270Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13108 3266..3270 -
1622815492.0646589-UTR-L-elsbetiae_contig13108:4403..44821622815492.0646589-UTR-L-elsbetiae_contig13108:4403..4482Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13108 4404..4482 -
1691682924.848657-UTR-L-elsbetiae_contig13108:4403..44821691682924.848657-UTR-L-elsbetiae_contig13108:4403..4482Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13108 4404..4482 -
1622815492.0757356-UTR-L-elsbetiae_contig13108:4950..51361622815492.0757356-UTR-L-elsbetiae_contig13108:4950..5136Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13108 4951..5136 -
1691682924.8572173-UTR-L-elsbetiae_contig13108:4950..51361691682924.8572173-UTR-L-elsbetiae_contig13108:4950..5136Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13108 4951..5136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.0146298-CDS-L-elsbetiae_contig13108:678..8251622815492.0146298-CDS-L-elsbetiae_contig13108:678..825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13108 679..825 -
1691682924.8108318-CDS-L-elsbetiae_contig13108:678..8251691682924.8108318-CDS-L-elsbetiae_contig13108:678..825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13108 679..825 -
1622815492.0273309-CDS-L-elsbetiae_contig13108:2450..26811622815492.0273309-CDS-L-elsbetiae_contig13108:2450..2681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13108 2451..2681 -
1691682924.8183298-CDS-L-elsbetiae_contig13108:2450..26811691682924.8183298-CDS-L-elsbetiae_contig13108:2450..2681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13108 2451..2681 -
1622815492.0394256-CDS-L-elsbetiae_contig13108:3154..32651622815492.0394256-CDS-L-elsbetiae_contig13108:3154..3265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13108 3155..3265 -
1691682924.8303964-CDS-L-elsbetiae_contig13108:3154..32651691682924.8303964-CDS-L-elsbetiae_contig13108:3154..3265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13108 3155..3265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13108.2447.1prot_L-elsbetiae_contig13108.2447.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13108 679..3265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13108.2447.1

>prot_L-elsbetiae_contig13108.2447.1 ID=prot_L-elsbetiae_contig13108.2447.1|Name=mRNA_L-elsbetiae_contig13108.2447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MHEANKAAYASVRGELRTLFGAICANKSADLVMAGPKLEDGLRLVVRNEH
IQAAAAAAATAVPPAAVVERSPQELSGGQQALLGLALVLALSSYQAPPLC
LLDEVDAALDETNQAAAARLVALTFRDGQALCVSHHAEFHRQSGHCVAVE
MRDGVSSVRPQT*
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mRNA from alignment at L-elsbetiae_contig13108:655..5136-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13108.2447.1 ID=mRNA_L-elsbetiae_contig13108.2447.1|Name=mRNA_L-elsbetiae_contig13108.2447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4482bp|location=Sequence derived from alignment at L-elsbetiae_contig13108:655..5136- (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGCTTGCATCCGAGCTGCGCGGTCTCCGTCGGCGTTCGGAGGACGA
ACAGCGAACAAAGACCGCACGCGGAAGCGGAAGCGGAAGGAAGGGAAGGC
CCGGAGGGCGGGGGGCAGATGCTTCTCAGGCGGTCGTCGCCGCCGGCAGC
GTGGACGAGGTCACCGTGCGGAAGCGGAGGGCCAAGGTGGGGGGGGGGGG
GAGGAGGGCAGGAAGGGAGGAGGGCCGCGTTTGATTTGTTGTTGTCGGCA
TTAAGTGATCCATTTATGTACGTGTCTATCTCCTGTGAACTAACTGCCTG
GGCGCGAAGACGCAACCCGTGGTCCAAGAGTCTTCGGTCGTGCCTGTTTT
GGAATTCCTCCGCAGGTGGTTTACCAATCGCGTAACTGCGTGACACAAGT
CCTTCACAGGGGATATAGATAGGTAGAGGGAGTTCCGCCGCGGGTTCTTT
GATTGAGCATAGATATAGAGAACCCTTTCCCTTGGAGAGACGTACAGGTA
CCGAACCCTTCCAGAAAATTAAATCGAGCTTTGCGTGCGCGGATGGGTGC
GCGGGACTGGCGCAGATCCGACATACCTATTGGCCCGCAACCAAGCTCCA
TGCCTCCCTCCCTCCCCACCTGTTCTGCTTATCTCTCGGCACATTGATCA
CAAGGTGGGCGTGTTGAAGCAGCAGCTGGCAAGCGTCCTAGAAGGCGCGC
GCCAGCTGGAGGCCGGAGTCAAGGCCTGCGAAGGTATACATACATACGAA
CTACTGCTGCTGTGTGTTGCAAGAAGAGCAGCTGTACTACCAACACACTT
CTACAATTAATAGGCTTGCTGGTTCTGCGGGCGAGAGAGTGGAGAGACTG
GTGCGGTCGGTAGAAAGAAGATTATTATGTGTTCGGCTCGCCTCATTTGG
CGCAGCTTTCACGAAGATTTTGTGATCGCACGGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGT
TCCGATCTCTATCCAGTACACCTCCATGAGTCCGTGTACTAATCCAACAC
TGACGCGGTCAATTCCCGTGGTCACAGGATAACTAACCCTCAAAGGGTAC
AGACTACTGAAAAACAAAAATAAATAAAATGGACCCGAGGGGCCCACAAC
ACGCACCAATAACCCTCGCCAGAGACCGAAACGACACTACTCGTATGTAC
GTAAGCACGCGGCGCATTTCTCGTCGTGTTGCCTGTGTACACTATGTGTG
TCTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCCAAGTGGA
GACGTGTACTACACCTTGCGGTTTACTTAGAGGTACTACACTTTGCAGTG
CACTATAATGCTGTTTAATGGTTTAGCTCAACCCCGTGATCATGCCACCG
CCAAGAAGTATGTAACCAACACTACAAGATCATATAGAGATCATATAGAT
AGAAGTATGTATGCAAAAAACAGGGACTAAAACCTTGCAGGTTGACTTAG
ATGTATGCACGTACTTCGGAGATAAAATTTCCTCAGATTGCCTACTTGCT
AACCGTCGACCGACCTACAACTACTTTTGTATGGTTTCGAAAAAAAGAAA
AAAAACGAAACGAACGAACGCCTCCGACAGATACCGGGCGTGCCTGACGC
ACACAACGTTTAGTAGCGCAGCTTATTTTTGCAGTTCTCCGGTGCCGTCA
GTGAGAAACTTGTCGTCCTTACCGCACACCATACCCTCACCCCAAGCCTG
GCCCTACCCCTTTTCCAACCGTGAAATACCCGTTCATCGTCCGTGCGCGC
ACTCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGT
GTGTGGTGTGGCGCAGGCCGCATGCACGAGGCAAACAAGGCTGCGTACGC
TTCTGTTCGGGGCGAGCTGCGGACGCTGTTCGGCGCGATTTGCGCCAACA
AGAGCGCCGATCTCGTCATGGCCGGCCCAAAGGTGCGTGCGTGCGTGCGT
GCGTGCGTGCGTGCGTTTTGTATTCTTCCTCTTCCCATTATTGGCTTATT
CGTCGTCTGCCCCACTGGCTCCCTCCCTTCCTCCACTACGACTCGCTAGA
CGACCCACAACCGGGGTCACACAGGAGGAGGGGGGGGGCACTACGACTGG
CTAGATGACCCACAACTGGGGTCACACAGGAGGAGGGGGGGGGGGACCCC
CTCCTGCGGTGCCTGCCTGTGATGTGTGCGCCTGTGCGGTGTGTCTGTGC
GCTGTGTTTGTTTGTGCGCTGTCTGTGCGTGTCGAATCTTTCCCCGCCTG
CCGACGCGGAAGGGACGGTAGGAATGTCACCCCCAGGGGGGGGGGAGGGG
CCCGGTAAAAACGAGCGAATGGGTGGTAATTAACAGATGCATCCACACAT
CCGTACAACCTCACCAACTACCTTTTTCGCTTGCGTCGCTGTTCTTGAAA
CAAAGCTCGAGGATGGTCTGCGCCTCGTTGTTCGGAATGAGCACATCCAA
GCCGCCGCTGCCGCCGCCGCCACCGCTGTACCACCGGCGGCCGTGGTGGA
GCGCTCCCCGCAAGAGCTGAGCGGGGGGCAGCAGGCCCTTCTCGGGCTGG
CGCTGGTGCTGGCTTTGTCCTCGTACCAAGCGCCGCCACTGTGCCTTCTC
GACGAGGTGGATGCTGCTCTGGACGAGACGAACCAGGTACTTACGTACTT
AGTATGTGATAACGTAAACAAATGGCACGTAACCCCCCCCCCCCCCCCCC
CCCCCCACGAACCCAAAAAACAAAACAGCACAGGCAATAATAATCAATAG
AGAGACCGGGGGGAGGGAGANNNNNNNNNNAAACGAACCAGGTTCATACG
CAATTTTGAAGAAAAAAAAAAAAAAAACGGCCCACCCCCCCCCCCCCCCC
CCCCCGGAGTTCAGAAATAAGCCAAAGGAGTGCCGTAATATCCCTTGAGA
ACGCCCCGGGGGGAGGCGATCAAAAGTTTTAGGCGAAAAAGAACGCCCCG
GGGCGTTCTCACACGAAGGGGAGCGGATATTTTCACAAAAAATAAAAATT
CCCCGGGGCGAAAAGGCCCCCGGGAGCGTGGTGTTATCTTTATTCCCTGG
GGCGTTTTTGAGTCAGGGCCGATTTTTTTGGGAGGCGAGTATCGAAGGGA
AAGCCCGGGGAGACTTCGTCGAGAATGGATGCTGGTGTAGCCCTTGTTAC
TAGAGGACGATTTACTTTCGTTGTTATTTTGTTTTTGTTCCATCTCTTCG
TCTGGGCATGCCTTGCTTGAAAACGTGGTGCAATCGCTCGTAGCTGCTGC
TCTCGCTATTTAGTTCAAGAAGCGAATACCGGAAGTCCATGGGCGTGTGC
AAGAGTAATTAGAGCTTGATGTGTGGTGCGTGTGTTGCGGTTCTGTTCGC
CGTCGGCGAGTGGGTGTGCAAGCAGGCTTGTGGAAGCTTCACGTGGCAAG
TTTAATAATCAATATTGTAGCAGCTGTGCTGTCAGCACTCTTCTTATATA
ATAGCAGCATCGCCTCAAACAACAACAGGAAACAAACAACAGCTGTTGGA
ACTAAAAATACACTTTTTTTGTGACCTCCCCCCGGGGGGCGTGGGAAAAC
ATGAGCCTAAAAGGAACGCCCCGGGGCGTTCTCGAAGATAGAAGGGCGGT
TAAAAATAAATAAAATAAAAAGTTATTAGTAGAATAAGTGTGGTATGTAC
AATATGGTAAAATGAGAACCGTAAATGAAGTGGGTGAGTTCGCACAGGGG
TGCGACAGATCGTTTTTCACGGGCGGGCCCGATGTATGGATCGACAACAC
GGGGAGAGGGTGCGCGCGCCAAGTGTCGGAGAGGAGGGTGTTTTTGGGGA
CATTTTGCCCGCGAGGCCTTCCCAACAATCGGGTTTTCGAGATCGGTACA
TACCACCCACCCTCTCCTTTTATCGAGATACACACTCCTTATATATCAAG
CCGCCGAACTCTACCGCACGCACTCGACCGTACCACTCATTATTTTTCGT
GACTGGAAGATAGCATAGTCTAGACCGGCTTGGTGTGCCGCCATATGACG
TGGTGGGTAGTCGTGAACGTGCTGCGCGAGCCACATAATATTATGTACAA
GCAGGTTGTTGTATGGTACACGACAAACTTTGTACATTTGTTTGTATTTA
CTCGAAGTAGTCTACGTACTGACCCCCGCATATCTTGCAACCTATCTCTT
CTCGCGATTGGTTCCCCGCCTCCCTTAATTAAAAGCCCTCTCTCTGTGTG
CTTGCCCATATATATCTATTATCTTCTTCTGCCTCGCTCGCTCGTTGTTG
CACGAATACAGGCGGCCGCGGCGCGCCTAGTGGCGCTGACCTTCCGAGAC
GGCCAGGCCCTTTGCGTCTCTCACCACGCCGAATTCCACCGCCAGAGTGG
ACACTGCGTGGCCGTCGAGATGCGCGACGGAGTTTCCAGCGTGCGCCCCC
AGACGTGATTGAGTCGACTGCGATCTCGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13108:655..5136-

>mRNA_L-elsbetiae_contig13108.2447.1 ID=mRNA_L-elsbetiae_contig13108.2447.1|Name=mRNA_L-elsbetiae_contig13108.2447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig13108:655..5136- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGAGGCAAACAAGGCTGCGTACGCTTCTGTTCGGGGCGAGCTGCG
GACGCTGTTCGGCGCGATTTGCGCCAACAAGAGCGCCGATCTCGTCATGG
CCGGCCCAAAGATGCACGAGGCAAACAAGGCTGCGTACGCTTCTGTTCGG
GGCGAGCTGCGGACGCTGTTCGGCGCGATTTGCGCCAACAAGAGCGCCGA
TCTCGTCATGGCCGGCCCAAAGCTCGAGGATGGTCTGCGCCTCGTTGTTC
GGAATGAGCACATCCAAGCCGCCGCTGCCGCCGCCGCCACCGCTGTACCA
CCGGCGGCCGTGGTGGAGCGCTCCCCGCAAGAGCTGAGCGGGGGGCAGCA
GGCCCTTCTCGGGCTGGCGCTGGTGCTGGCTTTGTCCTCGTACCAAGCGC
CGCCACTGTGCCTTCTCGACGAGGTGGATGCTGCTCTGGACGAGACGAAC
CAGCTCGAGGATGGTCTGCGCCTCGTTGTTCGGAATGAGCACATCCAAGC
CGCCGCTGCCGCCGCCGCCACCGCTGTACCACCGGCGGCCGTGGTGGAGC
GCTCCCCGCAAGAGCTGAGCGGGGGGCAGCAGGCCCTTCTCGGGCTGGCG
CTGGTGCTGGCTTTGTCCTCGTACCAAGCGCCGCCACTGTGCCTTCTCGA
CGAGGTGGATGCTGCTCTGGACGAGACGAACCAGGCGGCCGCGGCGCGCC
TAGTGGCGCTGACCTTCCGAGACGGCCAGGCCCTTTGCGTCTCTCACCAC
GCCGAATTCCACCGCCAGAGTGGACACTGCGTGGCCGTCGAGATGCGCGA
CGGAGTTTCCAGCGTGCGCCCCCAGACGTGAGCGGCCGCGGCGCGCCTAG
TGGCGCTGACCTTCCGAGACGGCCAGGCCCTTTGCGTCTCTCACCACGCC
GAATTCCACCGCCAGAGTGGACACTGCGTGGCCGTCGAGATGCGCGACGG
AGTTTCCAGCGTGCGCCCCCAGACGTGA
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